TCONS_00015124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015124
Unique NameTCONS_00015124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015124 ID=TCONS_00015124|Name=TCONS_00015124|organism=Clytia hemisphaerica|type=transcript|length=304bp
ATTAAACTAACAAATTAACACAACAAATTAAAATGAAGGCTGTTGCATAT
TTGGCGGggttcattttgaattttgttggATTGAATGGCAAAGGTTACCA
TCCTGTACCAACTTTTTTCAATCGAAAATACCCAAATGGGTCGATGGTGG
ATGCAAATCGCCCTGATTTTAAAATGGAAGGaccttttgaaaataatatg
gATCtcaataatatgaaagctttgCTAAAAGTTTGGCCAGAAGAAGTCGA
AAATGCAGGACAAGTGACAGTTCTATGGGAGGGAATTCCCAATCCAACCA
AAAC
Run BLAST on NCBI

transcript from alignment at sc0000204:27150..27901-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015124 ID=TCONS_00015124|Name=TCONS_00015124|organism=Clytia hemisphaerica|type=transcript|length=752bp|location=Sequence derived from alignment at sc0000204:27150..27901- (Clytia hemisphaerica)
ATTAAACTAACAAATTAACACAACAAATTAAAATGAAGGCTGTTGCATAT
TTGGCGGGGTTCATTTTGAATTTTGTTGGATTGAATGGCAAAGGTTACCA
TCCTGTACCAACTTTTTTCAAGTAGGTGGAATTATTTTCTCTTGACAAAG
CGAAACCTCTGCTCAGTCATCATGTATATCGCATAACTTCAAATGAGAAC
CAACTTTTCGACACCTTCGTTCAGGAGTTTGTTCAATGATGGTCACTACG
ATTAATTTAGGGTTCCCTATATGGTTCTTATGCTTTCTGCTTTTCGTTTT
GCACTGTGTACACTTATTTGCAAGTCGTTTTTAACCCAAAATATTTTGAA
CACTTTTTTTTATATATATAAGAACATAAGGCTTCGATGGCCGAAATATT
AAGAACAATTTAAGAACATTAGATTACAAGAACATTAGGAACATTTTTAG
ACTTAAAACTCAAAAAGTTAAGAACATCCCAAGGCTTCAAAAATTTTGGA
TGTTCTTATGAAAAACACGTGTAGTAACGGGATTTTTACGTCAGAAATTC
TGTATTATTCATCTTTCAGTCGAAAATACCCAAATGGGTCGATGGTGGAT
GCAAATCGCCCTGATTTTAAAATGGAAGGACCTTTTGAAAATAATATGGA
TCTCAATAATATGAAAGCTTTGCTAAAAGTTTGGCCAGAAGAAGTCGAAA
ATGCAGGACAAGTGACAGTTCTATGGGAGGGAATTCCCAATCCAACCAAA
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008471XLOC_008471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015124-exon-sc0000204-1575043694:27781..27901TCONS_00015124-exon-sc0000204-1575043694:27781..27901Clytia hemisphaericaexon
TCONS_00015124-exon-sc0000204-1575043694:27150..27332TCONS_00015124-exon-sc0000204-1575043694:27150..27332Clytia hemisphaericaexon
TCONS_00015124-exon-sc0000204-1510915933:27781..27901TCONS_00015124-exon-sc0000204-1510915933:27781..27901Clytia hemisphaericaexon
TCONS_00015124-exon-sc0000204-1510915933:27150..27332TCONS_00015124-exon-sc0000204-1510915933:27150..27332Clytia hemisphaericaexon
TCONS_00015124-exon-sc0000204-1491911889:27781..27901TCONS_00015124-exon-sc0000204-1491911889:27781..27901Clytia hemisphaericaexon
TCONS_00015124-exon-sc0000204-1491911889:27150..27332TCONS_00015124-exon-sc0000204-1491911889:27150..27332Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:27150..27901 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.1084	57.7429	49.0568	43.0416	214.942	180.746	75.0625	79.829	54.4474	48.6991	47.5453	47.0666	20.3318	28.9357	16.5943	18.0225	18.5328	28.8694	37.0354	50.5388	13.826	19.7736	26.5573	26.2512	105.016	114.962	47.8858	51.5977	11.8425	9.52394
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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