TCONS_00015158 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015158
Unique NameTCONS_00015158
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length776

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015158 ID=TCONS_00015158|Name=TCONS_00015158|organism=Clytia hemisphaerica|type=transcript|length=776bp
aataataatgatatatttctggcatttccaaaatttacatttggctcttc
acctgaaaattctgtatataatatatgtgcaatgtctagaaaaaaaattg
aaaaataacctGGTAGTATACTGAAGAAAAATTGGGGCCGTATGGGACAA
GCAGATAGTGATGAAGCGGTGGGCTAGTATGATGAATAAAATGATTAGGA
TTAAGAAGTATGAGGGGTAAATGTGAATAGTGATAGAGCTAGACTAAAAC
CTAAACAAATCCGAGTATCTGAGTATGCTAGCTGAGGCCATCGCAATGTG
tgctattataaaaaattaacgAATATATTAAAAAAAAAAATACTAACATA
ATGTTATAAGTTAGGACTAGGCTAAGGTTCAAGTACTATTGGTGGCTAGA
GGTAAAATAAGCGACAAAATAGATCTAAGAACTCAGTGAGATAAAATCAC
GACAGAGCGTAAGATAGAATGAGCAAAACTTGCATAGATTGCAACACCGA
AGGCTGTGTAAAAGTGTACTGGACCTTGCAAGACACGACCAGTATTTTGA
CATAAATAAGTGAGCTATCAACTatctaaattaaattaattgaaaataat
taaacatcaaatagaagaaaaaaaacttcataGAACTAGAAATATAATAA
AGTCATAtgcactgaagaaaatacaaactaaGTAAACCTAAGAACAGATG
GGCTAAATCTAAAGATCAGAATGGAGACTAGGGAACCAAGGCTACGAGTA
GCGATATTGGAAGAATTGAagtcaaa
Run BLAST on NCBI

transcript from alignment at sc0000204:226452..227227

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015158 ID=TCONS_00015158|Name=TCONS_00015158|organism=Clytia hemisphaerica|type=transcript|length=776bp|location=Sequence derived from alignment at sc0000204:226452..227227 (Clytia hemisphaerica)
tttgactTCAATTCTTCCAATATCGCTACTCGTAGCCTTGGTTCCCTAGT
CTCCATTCTGATCTTTAGATTTAGCCCATCTGTTCTTAGGTTTACttagt
ttgtattttcttcagtgcaTATGACTTTATTATATTTCTAGTTCtatgaa
gttttttttcttctatttgatgtttaattattttcaattaatttaattta
gatAGTTGATAGCTCACTTATTTATGTCAAAATACTGGTCGTGTCTTGCA
AGGTCCAGTACACTTTTACACAGCCTTCGGTGTTGCAATCTATGCAAGTT
TTGCTCATTCTATCTTACGCTCTGTCGTGATTTTATCTCACTGAGTTCTT
AGATCTATTTTGTCGCTTATTTTACCTCTAGCCACCAATAGTACTTGAAC
CTTAGCCTAGTCCTAACTTATAACATTATGTTAGTATTTTTTTTTTTAAT
ATATTcgttaattttttataatagcaCACATTGCGATGGCCTCAGCTAGC
ATACTCAGATACTCGGATTTGTTTAGGTTTTAGTCTAGCTCTATCACTAT
TCACATTTACCCCTCATACTTCTTAATCCTAATCATTTTATTCATCATAC
TAGCCCACCGCTTCATCACTATCTGCTTGTCCCATACGGCCCCAATTTTT
CTTCAGTATACTACCaggttatttttcaattttttttctagacattgcac
atatattatatacagaattttcaggtgaagagccaaatgtaaattttgga
aatgccagaaatatatcattattatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008486XLOC_008486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015158-exon-sc0000204-1491911889:226452..227227TCONS_00015158-exon-sc0000204-1491911889:226452..227227Clytia hemisphaericaexon
TCONS_00015158-exon-sc0000204-1510915933:226452..227227TCONS_00015158-exon-sc0000204-1510915933:226452..227227Clytia hemisphaericaexon
TCONS_00015158-exon-sc0000204-1575043694:226452..227227TCONS_00015158-exon-sc0000204-1575043694:226452..227227Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000204supercontigsc0000204:226452..227227 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.894922	1.50632	0.759003	1.01744	9.04356	6.22525	7.38246	7.3713	5.03532	4.29358	3.71131	3.775	3.8038	2.58432	1.91684	1.8051	2.39268	2.43432	2.45453	4.61082	7.33121	6.97011	3.09471	3.70257	2.98325	3.68079	5.54648	6.10301	3.07758	3.52945
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015158 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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