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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015319 ID=TCONS_00015319|Name=TCONS_00015319|organism=Clytia hemisphaerica|type=transcript|length=1963bp
TGAAAGTTACCCCTTGATTGACAGTTATCTGTTGTTGATTAGTAAATGGG
TTAATGCAACGCTTATTAGAGGGCTTCTGACTTCATCGTGACATAACAGT
TAAATTGGGTGGATAATTTGTAAAGTGATTGAAAAATacaattgaaatga
aaaatggctTCAAGAAGCTCAAAATGGAGGGACAAAAACAGAACATTCTT
GCAATATATTGAAATCCAAAATAGCAGTAATTTAGGGATTACAGATCACC
CTCAAGTCTCAACAGATCACCCTCAAGTCTCAACAGATCTCAATAATCCT
TCTGAAAATGTACCCTTGCCCATGGATATCTCAACTTCATCTGACTGTTC
AAACAATTTGTCTGTGGGAGAGCTTAGTCCTTACGTTGAATCAACATCAT
CTTCTGATTCCTCTGACCCATCTGGCTCTTCCGATTCAAACAATGAAGTA
GAAGTCAATACACGGAATCTATTACCTGACCTTGCGAAGTGGGCATTGAC
AAACAATCTATCTCACTCTGCACTGAATGGCTTGATGGAAGTTCTACGAG
AAAATGTTGATCAAGAACTTCCTAAAGATGCGAGAACTGTTTTGAATACT
CCCAGACAGGTATCATTTTGCAAGAAATGTGGAGGTGAATACATATATCT
TGGTATCAAGGAAGGAATTTTAAGACAaccaaaaataaagtattttgtTG
GAGAAAAAATTTCTCTAAAGATTAATATTGATGGATTGCCTCTTTTCAAA
AGTGCGGGAACAGAAGTCTGGCCAATTTTGGGAATGGTTGAAAAACAATC
CCCTTTTGTTATTGCTCTTTTTTGTGGGGAGGGTAAACCAAAATGTGTTG
CTGACTtcatgaaagattttttggaGGAATACTCTCATCTTGTACAAAAT
GGGATTCAAATTGATGAGCATATTGTTAAAGCCTTTGAAATTAAATGCTT
CATTTGTGATGCTCCCGCCCGAGCTTATTTGAAATCTATTAAAGGTCATA
CTGGATATAATGCTTGTGAACGATGCACCACAACGGGCGAAATGGATGGC
AGTACAATGACGTACAAAGATTTGAATTCATCGTTAAGAACAGATGAAAA
GTTTGCTGATTTCGACTACCCGGAACATCAACATGAATTAAGTATTCTTT
GCCAATATGGCATACCTTGTGTTAAGTTTTTTGTTTTGGATTCCATGCAT
CTGATCTTTCTTGGTGTCACCAAAAGGATGTTGTACCGTTTAAAAAGTGG
ACCAAGATTATGTAAACTGTCTCAAAGACAAATAGAGTCATTGTCAAATA
GCTTATCTGTTCTTCGCAACACCCTTCCCTCTGAATTTGCTCGACAGCCA
AGATCTTTGAAGTGGTTGAAGCGTTGGAAGGCTACTGAATTTAAGCAGTT
TCTTCTTTACACTGgaatgtttgttttgaaaggagTGGTGAACGCTGATG
TTTATCGACACTTTTTGGCTTTAAGTGTCTCTGTCTCAGTGTTGATGTAT
TTTAAACCTGAGGAGGAAAACTATCTGAACCTGTTTAATTTTACCAAACA
GCTTTTGAAATGGTTTGTTGAAAAATCATCAGATTTATATGGAGGAAGTT
TTGTCTCGTACAATGTCCATTCCACAATACACTTACACGAAGATGTTGAG
AATTTTAACTGTGGCTTGGCAGATCTTTCAGCTTTCCCATTTGAGAATTT
TCTGCATCGAATCAAAAAGATGGTTAGGAAAAGCTATCAACCTCTGCCAC
AGATTGCCAAAAGAATCCAAGAGATGGAAAAAACTGGTGTTGACTTTGTA
AGTAAAGTTATACACACAAAAGTGAGGTCTGTGTTAAAAGGTAACCGTGA
TGCATTGTTTCTTACCAGTAACAATAAAAATGTGAAGTTCTTGATGTAAA
AGGCAAAGAAATATCAGCACGTCTGTATTCTTTCAAGAAAACAAGATCAT
ACTTTGATGAGCC Run BLAST on NCBI protein sequence of TCONS_00015319-protein >TCONS_00015319-protein ID=TCONS_00015319-protein|Name=TCONS_00015319-protein|organism=Clytia hemisphaerica|type=polypeptide|length=581bp
MASRSSKWRDKNRTFLQYIEIQNSSNLGITDHPQVSTDHPQVSTDLNNPS
ENVPLPMDISTSSDCSNNLSVGELSPYVESTSSSDSSDPSGSSDSNNEVE
VNTRNLLPDLAKWALTNNLSHSALNGLMEVLRENVDQELPKDARTVLNTP
RQVSFCKKCGGEYIYLGIKEGILRQPKIKYFVGEKISLKINIDGLPLFKS
AGTEVWPILGMVEKQSPFVIALFCGEGKPKCVADFMKDFLEEYSHLVQNG
IQIDEHIVKAFEIKCFICDAPARAYLKSIKGHTGYNACERCTTTGEMDGS
TMTYKDLNSSLRTDEKFADFDYPEHQHELSILCQYGIPCVKFFVLDSMHL
IFLGVTKRMLYRLKSGPRLCKLSQRQIESLSNSLSVLRNTLPSEFARQPR
SLKWLKRWKATEFKQFLLYTGMFVLKGVVNADVYRHFLALSVSVSVLMYF
KPEEENYLNLFNFTKQLLKWFVEKSSDLYGGSFVSYNVHSTIHLHEDVEN
FNCGLADLSAFPFENFLHRIKKMVRKSYQPLPQIAKRIQEMEKTGVDFVS
KVIHTKVRSVLKGNRDALFLTSNNKNVKFLM Run BLAST on NCBI transcript from alignment at sc0000208:418033..419995 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015319 ID=TCONS_00015319|Name=TCONS_00015319|organism=Clytia hemisphaerica|type=transcript|length=1963bp|location=Sequence derived from alignment at sc0000208:418033..419995 (Clytia hemisphaerica)
GGCTCATCAAAGTATGATCTTGTTTTCTTGAAAGAATACAGACGTGCTGA
TATTTCTTTGCCTTTTACATCAAGAACTTCACATTTTTATTGTTACTGGT
AAGAAACAATGCATCACGGTTACCTTTTAACACAGACCTCACTTTTGTGT
GTATAACTTTACTTACAAAGTCAACACCAGTTTTTTCCATCTCTTGGATT
CTTTTGGCAATCTGTGGCAGAGGTTGATAGCTTTTCCTAACCATCTTTTT
GATTCGATGCAGAAAATTCTCAAATGGGAAAGCTGAAAGATCTGCCAAGC
CACAGTTAAAATTCTCAACATCTTCGTGTAAGTGTATTGTGGAATGGACA
TTGTACGAGACAAAACTTCCTCCATATAAATCTGATGATTTTTCAACAAA
CCATTTCAAAAGCTGTTTGGTAAAATTAAACAGGTTCAGATAGTTTTCCT
CCTCAGGTTTAAAATACATCAACACTGAGACAGAGACACTTAAAGCCAAA
AAGTGTCGATAAACATCAGCGTTCACCActcctttcaaaacaaacattcC
AGTGTAAAGAAGAAACTGCTTAAATTCAGTAGCCTTCCAACGCTTCAACC
ACTTCAAAGATCTTGGCTGTCGAGCAAATTCAGAGGGAAGGGTGTTGCGA
AGAACAGATAAGCTATTTGACAATGACTCTATTTGTCTTTGAGACAGTTT
ACATAATCTTGGTCCACTTTTTAAACGGTACAACATCCTTTTGGTGACAC
CAAGAAAGATCAGATGCATGGAATCCAAAACAAAAAACTTAACACAAGGT
ATGCCATATTGGCAAAGAATACTTAATTCATGTTGATGTTCCGGGTAGTC
GAAATCAGCAAACTTTTCATCTGTTCTTAACGATGAATTCAAATCTTTGT
ACGTCATTGTACTGCCATCCATTTCGCCCGTTGTGGTGCATCGTTCACAA
GCATTATATCCAGTATGACCTTTAATAGATTTCAAATAAGCTCGGGCGGG
AGCATCACAAATGAAGCATTTAATTTCAAAGGCTTTAACAATATGCTCAT
CAATTTGAATCCCATTTTGTACAAGATGAGAGTATTCCtccaaaaaatct
ttcatgaAGTCAGCAACACATTTTGGTTTACCCTCCCCACAAAAAAGAGC
AATAACAAAAGGGGATTGTTTTTCAACCATTCCCAAAATTGGCCAGACTT
CTGTTCCCGCACTTTTGAAAAGAGGCAATCCATCAATATTAATCTTTAGA
GAAATTTTTTCTCCAacaaaatactttatttttggtTGTCTTAAAATTCC
TTCCTTGATACCAAGATATATGTATTCACCTCCACATTTCTTGCAAAATG
ATACCTGTCTGGGAGTATTCAAAACAGTTCTCGCATCTTTAGGAAGTTCT
TGATCAACATTTTCTCGTAGAACTTCCATCAAGCCATTCAGTGCAGAGTG
AGATAGATTGTTTGTCAATGCCCACTTCGCAAGGTCAGGTAATAGATTCC
GTGTATTGACTTCTACTTCATTGTTTGAATCGGAAGAGCCAGATGGGTCA
GAGGAATCAGAAGATGATGTTGATTCAACGTAAGGACTAAGCTCTCCCAC
AGACAAATTGTTTGAACAGTCAGATGAAGTTGAGATATCCATGGGCAAGG
GTACATTTTCAGAAGGATTATTGAGATCTGTTGAGACTTGAGGGTGATCT
GTTGAGACTTGAGGGTGATCTGTAATCCCTAAATTACTGCTATTTTGGAT
TTCAATATATTGCAAGAATGTTCTGTTTTTGTCCCTCCATTTTGAGCTTC
TTGAagccatttttcatttcaattgtATTTTTCAATCACTTTACAAATTA
TCCACCCAATTTAACTGTTATGTCACGATGAAGTCAGAAGCCCTCTAATA
AGCGTTGCATTAACCCATTTACTAATCAACAACAGATAACTGTCAATCAA
GGGGTAACTTTCA Coding sequence (CDS) from alignment at sc0000208:418033..419995 >TCONS_00015319 ID=TCONS_00015319|Name=TCONS_00015319|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at sc0000208:418033..419995 (Clytia hemisphaerica)
TTACATCAAGAACTTCACATTTTTATTGTTACTGGTAAGAAACAATGCAT
CACGGTTACCTTTTAACACAGACCTCACTTTTGTGTGTATAACTTTACTT
ACAAAGTCAACACCAGTTTTTTCCATCTCTTGGATTCTTTTGGCAATCTG
TGGCAGAGGTTGATAGCTTTTCCTAACCATCTTTTTGATTCGATGCAGAA
AATTCTCAAATGGGAAAGCTGAAAGATCTGCCAAGCCACAGTTAAAATTC
TCAACATCTTCGTGTAAGTGTATTGTGGAATGGACATTGTACGAGACAAA
ACTTCCTCCATATAAATCTGATGATTTTTCAACAAACCATTTCAAAAGCT
GTTTGGTAAAATTAAACAGGTTCAGATAGTTTTCCTCCTCAGGTTTAAAA
TACATCAACACTGAGACAGAGACACTTAAAGCCAAAAAGTGTCGATAAAC
ATCAGCGTTCACCActcctttcaaaacaaacattcCAGTGTAAAGAAGAA
ACTGCTTAAATTCAGTAGCCTTCCAACGCTTCAACCACTTCAAAGATCTT
GGCTGTCGAGCAAATTCAGAGGGAAGGGTGTTGCGAAGAACAGATAAGCT
ATTTGACAATGACTCTATTTGTCTTTGAGACAGTTTACATAATCTTGGTC
CACTTTTTAAACGGTACAACATCCTTTTGGTGACACCAAGAAAGATCAGA
TGCATGGAATCCAAAACAAAAAACTTAACACAAGGTATGCCATATTGGCA
AAGAATACTTAATTCATGTTGATGTTCCGGGTAGTCGAAATCAGCAAACT
TTTCATCTGTTCTTAACGATGAATTCAAATCTTTGTACGTCATTGTACTG
CCATCCATTTCGCCCGTTGTGGTGCATCGTTCACAAGCATTATATCCAGT
ATGACCTTTAATAGATTTCAAATAAGCTCGGGCGGGAGCATCACAAATGA
AGCATTTAATTTCAAAGGCTTTAACAATATGCTCATCAATTTGAATCCCA
TTTTGTACAAGATGAGAGTATTCCtccaaaaaatctttcatgaAGTCAGC
AACACATTTTGGTTTACCCTCCCCACAAAAAAGAGCAATAACAAAAGGGG
ATTGTTTTTCAACCATTCCCAAAATTGGCCAGACTTCTGTTCCCGCACTT
TTGAAAAGAGGCAATCCATCAATATTAATCTTTAGAGAAATTTTTTCTCC
AacaaaatactttatttttggtTGTCTTAAAATTCCTTCCTTGATACCAA
GATATATGTATTCACCTCCACATTTCTTGCAAAATGATACCTGTCTGGGA
GTATTCAAAACAGTTCTCGCATCTTTAGGAAGTTCTTGATCAACATTTTC
TCGTAGAACTTCCATCAAGCCATTCAGTGCAGAGTGAGATAGATTGTTTG
TCAATGCCCACTTCGCAAGGTCAGGTAATAGATTCCGTGTATTGACTTCT
ACTTCATTGTTTGAATCGGAAGAGCCAGATGGGTCAGAGGAATCAGAAGA
TGATGTTGATTCAACGTAAGGACTAAGCTCTCCCACAGACAAATTGTTTG
AACAGTCAGATGAAGTTGAGATATCCATGGGCAAGGGTACATTTTCAGAA
GGATTATTGAGATCTGTTGAGACTTGAGGGTGATCTGTTGAGACTTGAGG
GTGATCTGTAATCCCTAAATTACTGCTATTTTGGATTTCAATATATTGCA
AGAATGTTCTGTTTTTGTCCCTCCATTTTGAGCTTCTTGAagccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015319-exon-sc0000208-1491911889:418033..419995 | TCONS_00015319-exon-sc0000208-1491911889:418033..419995 | Clytia hemisphaerica | exon |
| TCONS_00015319-exon-sc0000208-1510915933:418033..419995 | TCONS_00015319-exon-sc0000208-1510915933:418033..419995 | Clytia hemisphaerica | exon |
| TCONS_00015319-exon-sc0000208-1575043694:418033..419995 | TCONS_00015319-exon-sc0000208-1575043694:418033..419995 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000208 | supercontig | sc0000208:418033..419995 . |
Blast
The following BLAST results are available for this feature:
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