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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015527 ID=TCONS_00015527|Name=TCONS_00015527|organism=Clytia hemisphaerica|type=transcript|length=2311bp
attttttttctgcaaaattttgaagagcATACTGAGAATCAGCTGATTAT
CTTTTCTATCTGGATCTGTTGgtagattttgattttatcttGAATTTCGA
AGGTAGAGAGTTGCtgaaacaagaaaaatcaaacatgTCAAAGATTTTGC
ATGGGTTGAAAGATTTCTTTAACGAAGAAAAGTTAAGTGATCGTCGAATA
CGAATTATCGAGATTGAAGAAACGTTTGATGTGACTGGAAAGAAGAGATC
TGCACCTACCAATGAACAACCCCATTTGGAAGATTCACCCTCAAAGAAGA
TTAGAATAGATGGAGAAGAACAACAACAAGATGAACGTCCTCAAAACAAA
TTGGTGACCCCAGAAGAAGAATTGCCAATATGTAGCAAAAAAGACAACAG
TTGTTCTTTAAAAAGCCCTGTAAAGCAGAATACATCTGGGAATAATGTAG
AATCTCAACTCCATCCCCTCCCCAAGGGAAAAATGTATGTTGATTTGCCA
GTTCACTCGCTTGTCCTCTGTTTAAACAGCTTGTATTTCCAGAAACTATT
TGTTGATTCTGGAATGAAAGAAAATAGCATGTCATCCATCGATATCAAGG
TCAACCAAGGTGAAGGGAAGTATCTGGAAATGCTAGTTAAGGCTTTCTAT
GACCAAGATACGCTAGTGGATATTTCGTTGCCAGCTTTATTGTCTGTGAT
GGATATTGCAGCTAGATTTTCGTGTTCAAGTTTTGTTGATTTCGGACTTG
AGTTATTGGATAAGAAAACGGTCAAGACACTAGAGGAGTGCAATACCATC
TTACAATGTGTCTCCAGAGTGTTTCAATCTTATGATAGTAACGAGAAGTA
CAAGAAAACCTGGGATTCTTGTATTAAGTTTCTATGTGAAGCTCTTTTCC
CTTTGGAATTCAAGTTTGCTCAACAAGAGAAATTCAAGAATCTAGATCAC
CGAACGGTGCTATCGCTCTTACGCTCCAAACACGCTTTTGTTTTACACGA
GAATCATTTACTGGTCTTTGCTTACCAATGGTTGGAAGGGAATCCTGATT
ACCAGACGCCTCAAATTATTGAAAGCTTCCTTAAGTCGATTCGATCTGGA
TCGCTCTCAGTCACCTTCCTAACAGACGAACTTACAATATGTGACCGCAT
ATTGAACAAATGGCCTGGGTATTCACAATGGTTTGCTAATACCTTGAAAT
ATCACACTTTATCGCACGGTAGCAGGGAGCTGCGTGGTCTTAAATCGCCA
TCCATATCTCCTTCAAGGGGATTTGTACGACCTATGAATAACTCGTTATA
TGCTTGTAAACATTATACATACATCGCGAAAGATAAACAACTCGTCAGCG
CAACTGAGAATCGTTTCTTATGGAATGGAGTTGTGTTGGATCCGGTCATC
GCCATCAAGGATATTGATGAAAGGTCAGCTTACATTCGAATGCGAATCGT
CAAATACAATGGATTCCAACCAGTTGAACCAGTACAGCAATTCCACCAAA
AAATCGATTTCTACTTCTGTCTTCTACCTGGATTCATTCAATTTAAAACA
TCTTtgttgaaacataaaaaattcaTTGCTAAATTTGTACGAAAAGCTGA
AATCGAGTTCCGCTCAGCAAACGTCTCTAGTATGCACGCGGTGGCAAAAG
TTGATCAAGGTTTCCAGAAAATGCTTGCTGATCATGGGTTGAATCTAACG
CTCTTCTTTAAGAAGACCTCATTCTCTTGGNGCTGATCATGGGTTGAATC
TAACGCTTTTCTTTAAGAAGACCTCATTCTCTTGGATGAAAATTGATACT
AATTATGTAAAACCAAGCAAAAAGTTGATCTTATTGACCGAAAGTAAGAA
CTATCAACAATATGTTATTTGAAAATCAATCTGTTACACTTGTTACACTT
GTTACACTTTGAAGGTTTGCATTGACCATTTCACCATTTCATTCATCTCG
GATACATTCTCACGTTGGCATAAGGAAAAAAATTGGTAAGAGATTGATAT
CTATTCCCTAGGCTATTGTTTGTCCCAAAAGAAAGTGGACAAATTGTTat
aataattgaaataagatcTTTGGTCTCTCTGTTCAATTAATATGTATTAA
aattcccaagatgattgaataggttttggAGATTGAAATATTACGTATTC
ATACAAGNATATTAAAATTCCCAAGATTCCAAAACCTATTCAATCCGGTT
TTGGAGATTGAAATATTACATATTCATACAAGTCATGAAATTTCGCATAA
ATTATAAGGATTttaatttataagaaaattttccactttcttcgggacac
actgtatttGG Run BLAST on NCBI transcript from alignment at sc0000212:432904..438567+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015527 ID=TCONS_00015527|Name=TCONS_00015527|organism=Clytia hemisphaerica|type=transcript|length=5664bp|location=Sequence derived from alignment at sc0000212:432904..438567+ (Clytia hemisphaerica)
attttttttctgcaaaattttgaagagcATACTGAGAATCAGCTGATTAT
CTTTTCTATCTGGATCTGTTGgtagattttgattttatcttGAATTTCGA
AGGTAGGCTGTTTGACCTTTCAGTATATTTCTTCCGTTCAtccccggggg
agggggtatttGGCCTATTTGGTTTGCAAGATTAGATTACGGGTATGTCG
TCGgagccaaagtttgaaaatcgaccctttatTTAGATTTAGAGAGACTG
AACTTCGAAATTTATGActaatttcagccaaaatttagccaaaattttag
tccaaatttcaagaattgaTAATCCtagaaacaagttaagaacattttaa
ggctttttgtgGGCTTTTAAATACctgatttttaaaggaaaattgacaaa
aatactcaaaaaatgaggaaagaacatatttagaataaaaattttaaaag
ttaagtatatccccattaggatttcgATAGTCATTTTTatcccactgagg
aaaaatgTTCCACTGgggctatgagacaggggtatttaACTTGAAACACG
TTCATTTGCCATTTGgcaatttttggcaattttttacGAGTTTTGGCGTT
TATAGGCCTTATTTTGGCCGTAAGCTCAAGATGCGGTgctaagtaagtct
gcgaccgcagtcggaggcgacccgaaggctcctctttcgatagctatcta
cggTAAGTAAAGGCCCGgcggtactagggttgcgatcTGACGGGGgaggg
gggtgccgcccgactttcgacccttggacccttactgggaccgggactaa
aaaggagaaaaataaggaaaatcttttgaattttacgacccttattgagA
CAAAttcgaccaattttgaccaattttcgataGAATTTGAAAAGGATACT
TTACTTCGAGCCGTTGTTAAAAGGTTTGATAATAAAGGAAGTGTTGTAGA
ACGAGTTTCTCGTTTTTTTATACAGTATAACTAGGGTAGGGGgtcaacag
tcatttttggggcaaagtcaaaaaattcaagatgtagtgtttttttatga
aaatttaacctattgtgaggcattgtgcgcaatttttaaggtcagaagtc
caaaattgaaatatgcagtgatagtattctggagatactccagggaaatc
aaaatcatttgggtctgggatgcgtctatgtccgccattatggaaataaa
atccctgctaagagccatttttcaggcaaaaacccaaatttgaactgaaa
aattctctaaaataacaatagacatgggcccgaattttcttgcagtgata
gtattctggaaatactgcaggaaaatcaaaatcatctgggttttggattt
gggtatatccaccattttgggattgaaattcctgctaaaacgcaatattt
caagcaaaaatcccatttttgactggtaaaatcttgaaaatggcaataaa
catgaacctaaaatctttttgcagtgatagccttctggaaatactccagg
gaaatcaaaattctttgggtttaggataagggtatgtccgccattatgga
attgaaatatgtgctaaaactggctaaaaNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctggctaaaatgcaaca
tttcaagcaaaaactccatttttgactaaaaactgctctgaaatggcaat
agacatggacccaaatttctttgaagtgtTAATATTCTGTGAATtgggaa
aacaaaatcatttgagtCATTTgggatttgtttacatccaccattatgac
atttgacgccccaccctagTATAACAAAGAGATCATTGTATATTTCTGTA
TAATAAGGTCAACCGTAACATCCTTTACTAATATGAAATATGACATCTTT
TGATTTCTTGctgatgtcaaaaaaaaaaacattgttttttcCGAGTCACC
ATTGGGGCTAATAAGACAGATTATCATTTTGGTCTACCTTTCGACTATAG
ACACTCATCTTACGTTACTTGGAGAAAGTTAGTCCTGGCTCTGTAGAAAT
CAAACGAGACGAAAACGTTTTATAAAACTCCGTGTATATGTAATATTAAA
ATTTTGTTGCTACGAGTTTACCATGGGGTTTGTTTTAAAGTTTGTGGAGT
CGGTAttctctttttcaattttttatcgtTAAAGGAAACAGAAGTCTTga
ctttaaaaacttttaacgCAAAGATAAAATAGAAAACTTTCTGATACGac
gttttttcatttttatcgtgcATCACAGTTACAGAaaagattatttaaaa
aatatatcaatcACGCTGGCCCAGCTAGCTTTGGGTgtactattttgaaa
aatctcattGAAAACAAAGCTTTTTTTCTTGATCTATTTTCTTGAACAGT
AtgtggtgtttctttttaaaccATGAACCGACTCTccgtttgttttgtat
tttgagTTAAAGCTTCTTTATACATTCATTCGTATTTTCATATGGTTTCC
TTACGGGGTAAATGGAATTTGATGAAAACCGTCAGAAAATGATTTCTatt
ttcatatatattttttgtaaaaataaatattatattgcTATCAGATTGGC
TTTGGCAAAGTGGCCAAGAAACTTTTACGTACCATCCCgcgactttcaaa
aaatataatctttaTTACAGGTAGAGAGTTGCtgaaacaagaaaaatcaa
acatgTCAAAGATTTTGCATGGGTTGAAAGATTTCTTTAACGAAGAAAAG
TTAAGTGATCGTCGAATACGAATTATCGAGATTGAAGAAACGTTTGATGT
GACTGGAAAGAAGAGATCTGCACCTAGTAAGATATTGCTGGATATTGAAT
TGTAACTTTTGTATGGAAATTCAATGTTAACGTTGGCGAGTTTTCTTTAT
TGGTGTATTAGCCAAGCCGCTACTAGATGGGTAGTTCCTTTTTTTAGAAT
GTCTTTATGTTCCTTATTTCATTATTCTTCTTCTACCTACAAAACACCCC
CGTCTCGGTACCTAGTAGACTTTTGAAGCTCTTCGATGGAGTTGATTAAT
TTTCACTCTGTAGGAATAAAACATAGCAGGATACTAGCAATGTCTGTTGT
ATTTGGACGGGACGTGGGAGGAAAATTTCACAAGGTTTAAAAAATACCTT
CTTTCTGATGCTTGAACGACTTGATACTCGTGAATTGAGACTATTTTGGG
GAATTCTTTCACCGAGTTGTTATTCAATGGGTTAATCTAATCCTTATtta
gacaggggtgttaaaaaatttaatataaaaTTACATCATCATGACTTGTC
GCactcttttgtctttttatatttgaatttACATAAATATTCTTTACATT
TAGCCAATGAACAACCCCATTTGGAAGATTCACCCTCAAAGAAGATTAGA
ATAGGTATATAATTTCGCAGAAATCATCGTGTTTTTGCAATATATCATGC
CATGAATAATTTTGATTGATCCAGTTTTGGAAAACTTGAGATAAAAGCTC
TATAACGATTGAATAATTTTCAAAGGAGACTTGATACTAAGTAATCCATA
CAATATTTGAGCATTCTTGAAACAATAAAAGTTTATTATTGTCCTTTTCA
TTACTATGATAGATGGAGAAGAACAACAACAAGATGAACGTCCTCAAAAC
AAATTGGTGACCCCAGAAGAAGAATTGCCAATATGTAGCAAAAAAGACAA
CAGTTGTTCTTTAAAAAGCCCTGTAAAGCAGAATACATCTGGGAATAATG
TAGAATCTCAACTCCATCCCCTCCCCAAGGGAAAAATGTATGTTGATTTG
CCAGTTCACTCGCTTGTCCTCTGTTTAAACAGCTTGTATTTCCAGAAACT
ATTTGTTGATTCTGGAATGAAAGAAAATAGCATGTCATCCATCGATATCA
AGGTCAACCAAGGTGAAGGGAAGTATCTGGAAATGCTAGTTAAGGCTTTC
TATGACCAAGATACGCTAGTGGATATTTCGTTGCCAGCTTTATTGTCTGT
GATGGATATTGCAGCTAGATTTTCGTGTTCAAGTTTTGTTGATTTCGGAC
TTGAGTTATTGGATAAGAAAACGGTCAAGACACTAGAGGAGTGCAATACC
ATCTTACAATGTGTCTCCAGAGTGTTTCAATCTTATGATAGTAACGAGAA
GTACAAGAAAACCTGGGATTCTTGTATTAAGTTTCTATGTGAAGCTCTTT
TCCCTTTGGAATTCAAGTTTGCTCAACAAGAGAAATTCAAGAATCTAGAT
CACCGAACGGTGCTATCGCTCTTACGCTCCAAACACGCTTTTGTTTTACA
CGAGAATCATTTACTGGTCTTTGCTTACCAATGGTTGGAAGGGAATCCTG
ATTACCAGACGCCTCAAATTATTGAAAGCTTCCTTAAGTCGATTCGATCT
GGATCGCTCTCAGTCACCTTCCTAACAGACGAACTTACAATATGTGACCG
CATATTGAACAAATGGCCTGGGTATTCACAATGGTTTGCTAATACCTTGA
AATATCACACTTTATCGCACGGTAGCAGGGAGCTGCGTGGTCTTAAATCG
CCATCCATATCTCCTTCAAGGGGATTTGTACGACCTATGAATAACTCGTT
ATATGCTTGTAAACATTATACATACATCGCGAAAGATAAACAACTCGTCA
GCGCAACTGAGAATCGTTTCTTATGGAATGGAGTTGTGTTGGATCCGGTC
ATCGCCATCAAGGATATTGATGAAAGGTCAGCTTACATTCGAATGCGAAT
CGTCAAATACAATGGATTCCAACCAGTTGAACCAGTACAGCAATTCCACC
AAAAAATCGATTTCTACTTCTGTCTTCTACCTGGATTCATTCAATTTAAA
ACATCTTtgttgaaacataaaaaattcaTTGCTAAATTTGTACGAAAAGC
TGAAATCGAGTTCCGCTCAGCAAACGTCTCTAGTATGCACGCGGTGGCAA
AAGTTGATCAAGGTTTCCAGAAAATGCTTGCTGATCATGGGTTGAATCTA
ACGCTCTTCTTTAAGAAGACCTCATTCTCTTGGNGCTGATCATGGGTTGA
ATCTAACGCTTTTCTTTAAGAAGACCTCATTCTCTTGGATGAAAATTGAT
ACTAATTATGTAAAACCAAGCAAAAAGTTGATCTTATTGACCGAAAGTAA
GAACTATCAACAATATGTTATTTGAAAATCAATCTGTTACACTTGTTACA
CTTGTTACACTTTGAAGGTTTGCATTGACCATTTCACCATTTCATTCATC
TCGGATACATTCTCACGTTGGCATAAGGAAAAAAATTGGTAAGAGATTGA
TATCTATTCCCTAGGCTATTGTTTGTCCCAAAAGAAAGTGGACAAATTGT
TataataattgaaataagatcTTTGGTCTCTCTGTTCAATTAATATGTAT
TAAaattcccaagatgattgaataggttttggAGATTGAAATATTACGTA
TTCATACAAGNATATTAAAATTCCCAAGATTCCAAAACCTATTCAATCCG
GTTTTGGAGATTGAAATATTACATATTCATACAAGTCATGAAATTTCGCA
TAAATTATAAGGATTttaatttataagaaaattttccactttcttcggga
cacactgtatttGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015527-exon-sc0000212-1491911889:432904..433005 | TCONS_00015527-exon-sc0000212-1491911889:432904..433005 | Clytia hemisphaerica | exon |
| TCONS_00015527-exon-sc0000212-1510915933:432904..433005 | TCONS_00015527-exon-sc0000212-1510915933:432904..433005 | Clytia hemisphaerica | exon |
| TCONS_00015527-exon-sc0000212-1575043694:432904..433005 | TCONS_00015527-exon-sc0000212-1575043694:432904..433005 | Clytia hemisphaerica | exon |
| TCONS_00015527-exon-sc0000212-1491911889:435624..435779 | TCONS_00015527-exon-sc0000212-1491911889:435624..435779 | Clytia hemisphaerica | exon |
| TCONS_00015527-exon-sc0000212-1510915933:435624..435779 | TCONS_00015527-exon-sc0000212-1510915933:435624..435779 | Clytia hemisphaerica | exon |
| TCONS_00015527-exon-sc0000212-1575043694:435624..435779 | TCONS_00015527-exon-sc0000212-1575043694:435624..435779 | Clytia hemisphaerica | exon |
| TCONS_00015527-exon-sc0000212-1491911889:436307..436357 | TCONS_00015527-exon-sc0000212-1491911889:436307..436357 | Clytia hemisphaerica | exon |
| TCONS_00015527-exon-sc0000212-1510915933:436307..436357 | TCONS_00015527-exon-sc0000212-1510915933:436307..436357 | Clytia hemisphaerica | exon |
| TCONS_00015527-exon-sc0000212-1575043694:436307..436357 | TCONS_00015527-exon-sc0000212-1575043694:436307..436357 | Clytia hemisphaerica | exon |
| TCONS_00015527-exon-sc0000212-1491911889:436566..438567 | TCONS_00015527-exon-sc0000212-1491911889:436566..438567 | Clytia hemisphaerica | exon |
| TCONS_00015527-exon-sc0000212-1510915933:436566..438567 | TCONS_00015527-exon-sc0000212-1510915933:436566..438567 | Clytia hemisphaerica | exon |
| TCONS_00015527-exon-sc0000212-1575043694:436566..438567 | TCONS_00015527-exon-sc0000212-1575043694:436566..438567 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:432904..438567 + |
Blast
The following BLAST results are available for this feature:
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