TCONS_00015544 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015544
Unique NameTCONS_00015544
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1139

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015544 ID=TCONS_00015544|Name=TCONS_00015544|organism=Clytia hemisphaerica|type=transcript|length=1139bp
GCAAAATCCAATGCCATCCAATTCATCGTTGACAACCAAATTTCCGATAT
TGTCGATTTGAAATGGCGATTCGTGAACCAACAACCAGAATCTCAATCAG
TGTCAACTGGCGAAATATCACCAGAAAGTAAAGATTTGGTTTTCGTTCAA
CCACGGAGCAAAAAGAACTTTAAATATAATTTCGATGATGAATTATTCAC
TCGCAGCTCTGGCGATTCACGAACTATTCAAGTTTTCGGTCAAGATTCTG
CCACTGAAGTTCAAGTCTTGTTAAACAAGAAACCACATTTAAATTTCGAT
TTGGATCAAGAGAACATCTCTCCAATTAAtattatcattacatcatacCA
AGACAAAGACAAAGATAGCAAAGCGATTGATTATCCAATCAAGATTCGTC
TTTCCAACAATGGAATCAATCAACCTTACATTCTCCGATGGAATTTCCAA
ATAGTCGATGATTCACTTTCTTCAAATTCACCAAAAGAATTCACCATTGA
TCCTTCTAAGCCAGATAGCCAAGAAGTAGATCTCATCATCAGAAGCACGA
GACCNTAGTACTGCAACCTTTTAGATATTTATCAAGCAATGAGGAATTGA
CAAACGAGGACATGAGAAAGCCTCCACAAACCATTGTCATCACTAACGCG
GCGAAATATTACTACGTGAATTTGAACATCGTCAACCAATTACAATCCNT
TTCGGTCATATCTGAACAAAATCCTGAATCACCAAAGACAGAATCGTTCA
TAATCCAACCATTAGATTTTACACTGTCTCAACCTAGAGaaTTCCGATAC
GTTCTCATTTTCAATGCTTTCAACAATGGACAAGAAGAAGCTACACTTTC
TTTGGAAATTACTGACCGATATATCGCCAACTACCTTAGACCCTCCGATC
CTTCGCCAAAAACCTACATAGCTTTACCCAACAGAAATGTTCAATACAAC
GTCGATTTCATTAGCTCAAAACCTTTTGATGCGGGCACCTTAAAGAAAGC
TATAAGAGTCGGTGCTAAAGATTCAAATGGTCAGGATTTATTGGTCAatg
gaaaatcaaatatttttttagtaCTGCAACCTTTTAGATATTTATCAAGC
AATGAGGAATTGACAAACGAGGACATGAGAAAGCCTCCA
Run BLAST on NCBI

transcript from alignment at sc0000212:325299..327969-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015544 ID=TCONS_00015544|Name=TCONS_00015544|organism=Clytia hemisphaerica|type=transcript|length=2671bp|location=Sequence derived from alignment at sc0000212:325299..327969- (Clytia hemisphaerica)
GCAAAATCCAATGCCATCCAATTCATCGTTGACAACCAAATTTCCGATAT
TGTCGATTTGAAATGGCGATTCGTGAACCAACAACCAGAATCTCAATCAG
TGTCAACTGGCGAAATATCACCAGAAAGTAAAGATTTGGTTTTCGTTCAA
CCACGGAGCAAAAAGAACTTTAAATATAATTTCGATGATGAATTATTCAC
TCGCAGCTCTGGCGATTCACGAACTATTCAAGTTTTCGGTCAAGATTCTG
CCACTGAAGTTCAAGTCTTGTTAAACAAGAAACCACATTTAAATTTCGAT
TTGGATCAAGAGAACATCTCTCCAATTAATATTATCATTACATCATACCA
AGACAAAGACAAAGATAGCAAAGGTACCTGTTGGTTTTTTTCTCTCTTAT
AACTATGAATTAAGTTGGAGGCAAATCTACTTAATGTATAGCTGAATCCC
AGTATCATTGCGTTAATTCAATGGAAAGTCGTGAATTATTCACCGTAGGG
AATAAAATCTATTAGTTAAACTTTCAGTATCAATATTTTTTAGCTATACG
CAGTACATTTTTGGATAGAAAGATGGAAGTTTTTGCAAAATCTTATTTTT
TTTTGAATTTTTGGCTAAAATATTCCGAACATTTTGAATAACTTTCTTTT
ACATGAGATTTTTTTTCCATTTGATTTTAGGTCATGGAAAATTTTGACCT
TAATTTTCTTATAAAAAGATAAAACCTACCAGCATTTTAGGGCTCATTTC
TGTACATTCATACGTTTCCTTAACTCTTTATTTTTTACCTTTATTGTTTT
TCAGCGATTGATTATCCAATCAAGATTCGTCTTTCCAACAATGGAATCAA
TCAACCTTACATTCTCCGATGGAATTTCCAAATAGTCGATGATTCACTTT
CTTCAAATTCACCAAAAGAATTCACCATTGATCCTTCTAAGCCAGATAGC
CAAGAAGTAGATCTCATCATCAGAAGCACGAGACCNTAGTACTGCAACCT
TTTAGATATTTATCAAGCAATGAGGAATTGACAAACGAGGACATGAGAAA
GCCTCCACAAACCATTGTCATCACTAACGCGGGTAATTTATTTAGAAAGG
CTTTATTTTGCTTGAAACAGTAGGTTCGTTTGATTTTCTTCGATGTGTTT
GCAACACGAAATGCAGTAGATCCATGTCGTCGAATTGCGAACAAACGTTA
TGTCGAATTACTTAATTTGAGTAGAACATACTACACGCTTTTTTTTTATA
AGAATACACTTTATGAGAATATCCATGATGAAAATGGCCCAAAAATTAAG
AATATGCTAAGAATATCACCATCATGGAATTTTGAGACGTATGTACTAAA
TGTTAAATCTAGTCTGAACTAGGATTCTAACCTAAGAATGCTGTAAGAAT
ATTTTAGGATGATTTTCCCAAGAAAGTTAAGAATATCCATGATGAAATGG
ATTTACACCATTCTTGTAAAAAAAAAGCGTGTATTTCTTCCTGGAAATAG
TAACTAGAAGTTAGAGAAAAAAGTACAGAAGATAGATCGACAGGTTCCAG
AATGTCTTGCCCTTTATACAAGTCATTTATATACAGCCTTTTTTGAAGTG
AACCTCCACGTGTGAGCTAAAAATTGAGATAAAGCGCAAAAAAATTGAGT
TGCACCTTTGTTTTTCTCCTTTCAGCGAAATATTACTACGTGAATTTGAA
CATCGTCAACCAATTACAATCCNTTTCGGTCATATCTGAACAAAATCCTG
AATCACCAAAGACAGAATCGTTCATAATCCAACCATTAGATTTTACACTG
TCTCAACCTAGAGGTATATTGTCTTAATACTTCATAATAATTTTAATACT
ACCTTTACTTATTTTTCTCTGGTGATAATCAACGAGGGACTTTTGATCAA
GGCAAAAAAAGTCTTAATACTTGCTAAAAGGTTTCTACAGAGCGTTCTAT
AAATGACATTATACAAATTATATAAATTATACAAATGACAGCTTGAGAGT
AAATTCATAATTTAAACTTTTAAGTAATGTAAAAAAGTAAGGCGGAGGCA
AACCAGAGTCTCCTCTTTCGATAGTTATCCATCCGAAAGAAGAATAGGGC
GCAAACTTTTCTCCCTGAATTACTCCACTTACCCTTGATCTTTCTCTTTA
ATTACTGAGAACAAAGCAGAGAAGTATCAACTCGAAATTCACACCAACGA
ACCGTAGTCGAACGTTCTACCTTCTCACATTATGGTCACTATATACTTTA
AATCGAAAGCTCCTTTTAGCACTGATTACATTGTTTAACCATTTACGATA
TTTGTATTTTCTTTCTTTCAGAATTCCGATACGTTCTCATTTTCAATGCT
TTCAACAATGGACAAGAAGAAGCTACACTTTCTTTGGAAATTACTGACCG
ATATATCGCCAACTACCTTAGACCCTCCGATCCTTCGCCAAAAACCTACA
TAGCTTTACCCAACAGAAATGTTCAATACAACGTCGATTTCATTAGCTCA
AAACCTTTTGATGCGGGCACCTTAAAGAAAGCTATAAGAGTCGGTGCTAA
AGATTCAAATGGTCAGGATTTATTGGTCAATGGAAAATCAAATATTTTTT
TAGTACTGCAACCTTTTAGATATTTATCAAGCAATGAGGAATTGACAAAC
GAGGACATGAGAAAGCCTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008671XLOC_008671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015544-exon-sc0000212-1575043694:327597..327969TCONS_00015544-exon-sc0000212-1575043694:327597..327969Clytia hemisphaericaexon
TCONS_00015544-exon-sc0000212-1575043694:326888..327165TCONS_00015544-exon-sc0000212-1575043694:326888..327165Clytia hemisphaericaexon
TCONS_00015544-exon-sc0000212-1575043694:326157..326294TCONS_00015544-exon-sc0000212-1575043694:326157..326294Clytia hemisphaericaexon
TCONS_00015544-exon-sc0000212-1575043694:325299..325648TCONS_00015544-exon-sc0000212-1575043694:325299..325648Clytia hemisphaericaexon
TCONS_00015544-exon-sc0000212-1510915933:327597..327969TCONS_00015544-exon-sc0000212-1510915933:327597..327969Clytia hemisphaericaexon
TCONS_00015544-exon-sc0000212-1510915933:326888..327165TCONS_00015544-exon-sc0000212-1510915933:326888..327165Clytia hemisphaericaexon
TCONS_00015544-exon-sc0000212-1510915933:326157..326294TCONS_00015544-exon-sc0000212-1510915933:326157..326294Clytia hemisphaericaexon
TCONS_00015544-exon-sc0000212-1510915933:325299..325648TCONS_00015544-exon-sc0000212-1510915933:325299..325648Clytia hemisphaericaexon
TCONS_00015544-exon-sc0000212-1491911889:327597..327969TCONS_00015544-exon-sc0000212-1491911889:327597..327969Clytia hemisphaericaexon
TCONS_00015544-exon-sc0000212-1491911889:326888..327165TCONS_00015544-exon-sc0000212-1491911889:326888..327165Clytia hemisphaericaexon
TCONS_00015544-exon-sc0000212-1491911889:326157..326294TCONS_00015544-exon-sc0000212-1491911889:326157..326294Clytia hemisphaericaexon
TCONS_00015544-exon-sc0000212-1491911889:325299..325648TCONS_00015544-exon-sc0000212-1491911889:325299..325648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:325299..327969 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.340767	0.230085	0.101391	0.141877	0.780401	0.654071	0.228937	0.780398	0.35293	0.292713	0.278903	0.321226	0.440105	0.156934	0.237485	0.28039	0.12431	0.450322	0.390603	0.3734	1.84949	0.667031	0.283575	0.381282	0.397544	0.751754	1.98861	1.03437	0.384754	0.593994
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015544 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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