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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015562 ID=TCONS_00015562|Name=TCONS_00015562|organism=Clytia hemisphaerica|type=transcript|length=1173bp
GGCAAAACAGTTGTAAAATTtgcattttatttaaaaataatccATAGGaa
tacaaaatttcttttgaattgattttgatattttaaatattgGCTCAGCC
TGGCTCAGCTCTAAAGTCCTTTATTTTCTATGTGGTTATTTTAACTCAAA
TTATGTACCAAAATAGCAAGAATGTATAAATTTCGAGCTCAAGAACAAGA
ATATAAACAGAATGCATCCACCAAAAACACTCTACAAGATCGTTCACCAA
AACACTCTTTTTTTACACAATATCTTATAAGTAGTTCCTGTACCAACCTT
AGCGCAATAAAGACAAAAGAGGGCTAGAAGGATGCTAACATTCTCATTTT
CTCTCCAATGCAAAGGAGATATTTATTCCTCTTCCTTGTGATCAGCCTTC
TAACTCAGGACAAGCTTTTATAATTTTCATCACTTTATCTAAAACTACTG
TATTGGTGCTTCGGCAACAATCCACAGTGTATGGTGGTTCAATAGTAGCT
ATTCCATTAACAACCGATAGTGATTCAGTGTCTGTCAATTCTACTGGTAG
TTGATTCTTCTTCAGCCAATCAAAtaagatttcttttcttttagttGTTT
CCTGAGAGCCACCACAGCCAGAACTTCTGAATAACTTATCATCAAGCCTC
TTTTTAAAGTCATTCAGATTTTGCGAGTTTTCACATTCATTTTCTTGTAA
TTTGAATGATTTGATAGCATACTTCATGATAACTTGGGTGCAAAACTCTT
CATTTTCATtgcaaataatcaaaataacaCACCCACTAACAGGATCTACT
GTGTAACATTCTCCTTCAAATATAGTTCCATTAACTAgttcaatttgaat
atatttatcaATAAACTTGTTTGGTTCCATTCCAAAGATCTGGGCACAAT
ATAGTATAAGGTCTTGTCTTATTgcatcaaatgttacagcctgGTAGTAG
CTCGTTGGGGTCAAAAATCCTCTTTTTGACTATCTTTTCACTTCAAAGAT
TGATTTTTTGCCACAATGTGTTGATTTGGGGACTTTGGGGACTTTTTAAA
TATGTTATGTTGAGTAATTCTGAGTAATTCTGAGTAACTAAATATTTTAG
AATACAAATAAAGataaaaggaaatatttattataAACTTTTACTACATT
ACTATCAACAAAAgcacaaaaaa Run BLAST on NCBI protein sequence of TCONS_00015562-protein >TCONS_00015562-protein ID=TCONS_00015562-protein|Name=TCONS_00015562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MEPNKFIDKYIQIELVNGTIFEGECYTVDPVSGCVILIICNENEEFCTQV
IMKYAIKSFKLQENECENSQNLNDFKKRLDDKLFRSSGCGGSQETTKRKE
ILFDWLKKNQLPVELTDTESLSVVNGIATIEPPYTVDCCRSTNTVVLDKV
MKIIKACPELEG Run BLAST on NCBI transcript from alignment at sc0000212:122965..124137 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015562 ID=TCONS_00015562|Name=TCONS_00015562|organism=Clytia hemisphaerica|type=transcript|length=1173bp|location=Sequence derived from alignment at sc0000212:122965..124137 (Clytia hemisphaerica)
ttttttgtgcTTTTGTTGATAGTAATGTAGTAAAAGTTtataataaatat
ttccttttatCTTTATTTGTATTCTAAAATATTTAGTTACTCAGAATTAC
TCAGAATTACTCAACATAACATATTTAAAAAGTCCCCAAAGTCCCCAAAT
CAACACATTGTGGCAAAAAATCAATCTTTGAAGTGAAAAGATAGTCAAAA
AGAGGATTTTTGACCCCAACGAGCTACTACcaggctgtaacatttgatgc
AATAAGACAAGACCTTATACTATATTGTGCCCAGATCTTTGGAATGGAAC
CAAACAAGTTTATtgataaatatattcaaattgaacTAGTTAATGGAACT
ATATTTGAAGGAGAATGTTACACAGTAGATCCTGTTAGTGGGTGtgttat
tttgattatttgcaATGAAAATGAAGAGTTTTGCACCCAAGTTATCATGA
AGTATGCTATCAAATCATTCAAATTACAAGAAAATGAATGTGAAAACTCG
CAAAATCTGAATGACTTTAAAAAGAGGCTTGATGATAAGTTATTCAGAAG
TTCTGGCTGTGGTGGCTCTCAGGAAACaactaaaagaaaagaaatcttaT
TTGATTGGCTGAAGAAGAATCAACTACCAGTAGAATTGACAGACACTGAA
TCACTATCGGTTGTTAATGGAATAGCTACTATTGAACCACCATACACTGT
GGATTGTTGCCGAAGCACCAATACAGTAGTTTTAGATAAAGTGATGAAAA
TTATAAAAGCTTGTCCTGAGTTAGAAGGCTGATCACAAGGAAGAGGAATA
AATATCTCCTTTGCATTGGAGAGAAAATGAGAATGTTAGCATCCTTCTAG
CCCTCTTTTGTCTTTATTGCGCTAAGGTTGGTACAGGAACTACTTATAAG
ATATTGTGTAAAAAAAGAGTGTTTTGGTGAACGATCTTGTAGAGTGTTTT
TGGTGGATGCATTCTGTTTATATTCTTGTTCTTGAGCTCGAAATTTATAC
ATTCTTGCTATTTTGGTACATAATTTGAGTTAAAATAACCACATAGAAAA
TAAAGGACTTTAGAGCTGAGCCAGGCTGAGCcaatatttaaaatatcaaa
atcaattcaaaagaaattttgtattCCTATggattatttttaaataaaat
gcaAATTTTACAACTGTTTTGCC Coding sequence (CDS) from alignment at sc0000212:122965..124137 >TCONS_00015562 ID=TCONS_00015562|Name=TCONS_00015562|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0000212:122965..124137 (Clytia hemisphaerica)
ATGGAACCAAACAAGTTTATtgataaatatattcaaattgaacTAGTTAA
TGGAACTATATTTGAAGGAGAATGTTACACAGTAGATCCTGTTAGTGGGT
GtgttattttgattatttgcaATGAAAATGAAGAGTTTTGCACCCAAGTT
ATCATGAAGTATGCTATCAAATCATTCAAATTACAAGAAAATGAATGTGA
AAACTCGCAAAATCTGAATGACTTTAAAAAGAGGCTTGATGATAAGTTAT
TCAGAAGTTCTGGCTGTGGTGGCTCTCAGGAAACaactaaaagaaaagaa
atcttaTTTGATTGGCTGAAGAAGAATCAACTACCAGTAGAATTGACAGA
CACTGAATCACTATCGGTTGTTAATGGAATAGCTACTATTGAACCACCAT
ACACTGTGGATTGTTGCCGAAGCACCAATACAGTAGTTTTAGATAAAGTG
ATGAAAATTATAAAAGCTTGTCCTGAGTTAGAAGGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015562-exon-sc0000212-1491911889:122965..124137 | TCONS_00015562-exon-sc0000212-1491911889:122965..124137 | Clytia hemisphaerica | exon |
| TCONS_00015562-exon-sc0000212-1510915933:122965..124137 | TCONS_00015562-exon-sc0000212-1510915933:122965..124137 | Clytia hemisphaerica | exon |
| TCONS_00015562-exon-sc0000212-1575043694:122965..124137 | TCONS_00015562-exon-sc0000212-1575043694:122965..124137 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000212 | supercontig | sc0000212:122965..124137 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009422 | Gemin6 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000245 | spliceosomal complex assembly |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0000245 |
spliceosomal complex assembly |
| cellular_component |
GO:0005634 |
nucleus |
Blast
The following BLAST results are available for this feature:
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