TCONS_00015564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015564
Unique NameTCONS_00015564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015564 ID=TCONS_00015564|Name=TCONS_00015564|organism=Clytia hemisphaerica|type=transcript|length=608bp
gcTGATGGTCCCCAATCGAAAGAATGATAGATAATGGTATTTTATATATT
ACTTGTCATTTCAGTTTGGGAAGTCATTTTGCTCCCCTACACgagtaaaa
aaagacaaatccTTCAAATTCATAATTCTTGTCTTTTCCAAATCGTACTC
AAAATATACCAATTCTTTTCAGTaaaaaattctgtaaaaatgcacaaata
caaaattttcaaagataaaaaaatcagCATAAAAAGGTACAACTATATCC
GATAGAAGAAATGCTACAAAAAATTGTAATTGGATTTCCTATCATCATgc
gaaaaataatttcaaagaaaataatatcaaaaatttgaaatataatagaa
tgtaatattttctcttttaaaataaaagtttatcATGTCTGTTAAATACG
TTCGAATATTTTGACTGTTACGTCtccttttaaagtttttatcaaaatac
agaaagttttcttatttgaaaaacaaattggAAACAGTAGGCTTACTTTA
TACTCTCCcaataaaaatttcgaaattctctgttaattaaaaaatcattt
attaaTTCATGTTTGGAATGTGAATTAAAGAGTTCTTCAAAAAGCAGAAA
TCACCCGT
Run BLAST on NCBI

transcript from alignment at sc0000212:219290..219897

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015564 ID=TCONS_00015564|Name=TCONS_00015564|organism=Clytia hemisphaerica|type=transcript|length=608bp|location=Sequence derived from alignment at sc0000212:219290..219897 (Clytia hemisphaerica)
ACGGGTGATTTCTGCTTTTTGAAGAACTCTTTAATTCACATTCCAAACAT
GAAttaataaatgattttttaattaacagagaatttcgaaatttttattg
GGAGAGTATAAAGTAAGCCTACTGTTTccaatttgtttttcaaataagaa
aactttctgtattttgataaaaactttaaaaggaGACGTAACAGTCAAAA
TATTCGAACGTATTTAACAGACATgataaacttttattttaaaagagaaa
atattacattctattatatttcaaatttttgatattattttctttgaaat
tatttttcgcATGATGATAGGAAATCCAATTACAATTTTTTGTAGCATTT
CTTCTATCGGATATAGTTGTACCTTTTTATGctgatttttttatctttga
aaattttgtatttgtgcatttttacagaattttttACTGAAAAGAATTGG
TATATTTTGAGTACGATTTGGAAAAGACAAGAATTATGAATTTGAAggat
ttgtctttttttactcGTGTAGGGGAGCAAAATGACTTCCCAAACTGAAA
TGACAAGTAATATATAAAATACCATTATCTATCATTCTTTCGATTGGGGA
CCATCAgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008691XLOC_008691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015564-exon-sc0000212-1491911889:219290..219897TCONS_00015564-exon-sc0000212-1491911889:219290..219897Clytia hemisphaericaexon
TCONS_00015564-exon-sc0000212-1510915933:219290..219897TCONS_00015564-exon-sc0000212-1510915933:219290..219897Clytia hemisphaericaexon
TCONS_00015564-exon-sc0000212-1575043694:219290..219897TCONS_00015564-exon-sc0000212-1575043694:219290..219897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000212supercontigsc0000212:219290..219897 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0984957	0	0	0	0	0.082481	0	0	0.184059	0.185799	0.584509	1.07461	0.633328	0.695544	0.917613	0.286184	0.101496	0.177966	0	0.109384	0.0974958	0.954659	0.0875474	0.511561	0.135473	2.60108	1.58532
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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