TCONS_00015658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015658
Unique NameTCONS_00015658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015658 ID=TCONS_00015658|Name=TCONS_00015658|organism=Clytia hemisphaerica|type=transcript|length=3639bp
TTTAGAGAATTAATAGAAAAAGTTATGAGTATAAAGACATTTGACCTTGT
CCCGGTTGTGGACAGGGTCAACCCCGGTGGAGAGAAAGTAAAAAGCTCAA
TCCAATGCATTgaacagatttttgaaaatttgtatttgGGAACATCAGAC
TGTTTCATTGTTCATTACTGTATTGAGAAAGGCACAAATAACATTGGTAA
AACTATTTTCATGAATCGTCTTCAAAGGAATAAGAACCTTGCATTACGTA
AACCTATCGTACAGTTGCTAGGGCTACCGACCATCGGGCAGATTCTTGTT
TTGATTGATGGCTGTGTATCCGTTGTTTCAATGTATGGCCTTGAGTTTTT
ACGTGGAACTCCCAGTAGAGATTTACTTCGAAACATAACAGTAATGGCAA
GGAATACTAAGCCACTTACCTCAACCCATGGTACTTGTCAAATTTGTGTT
GGAACAAGGCGCAAAACTATTCAGATCATCACAATCTCTGCTGATGAATG
TACAGTTTTGAAAGAAATCAATTTGCAAGGTGTACCCAGCACTTTATCTA
TGTATCAACAATTTATATGCTCCAATGTGGGGAATCAATACTACATGATT
GATTTCACAAAATCAAACCTCCAGGAATTGTTCATGTATGAAGCTCACGT
TAAACCAGTTGTAAAGCAACTTTCTTCAGATGAATTTCTTCTCAGTGGAC
CGACTGATATGATGGGTATGATTGTAACATCAAAGGGACTTTCAATGCAT
CAACCATTAAGTTTCTTAGATGGCTGTCAATCTGTGGCTTTCTCTTACCC
CTATATTTTAGTTCTTGGTGAATCAAGCATTACTGTTCATAGTATCCTTg
atcaacaacaaaaacaaggAATATCATTCACTGGAGGTGTTTTGATCACA
GATTTCGATGGGCAAGTATTCATTGCAATGCAAAGATCGGTCATGGCTTT
TTTACCTGTTCCTTTTAACAAACAGATTCAAATGTTGTTGATTGATAAAC
GTATTGATGAAGCATTTGATCTTCTTATAGTAAGCAGTAAGCTTAACCCG
AAACAATATGATCAAACATATGTTAAACAAGTAAAAGCACAAGCCGCGTT
CGTTCATTTTGCAGATGGACAGTTTTCAAAAGCACTACCCTTGTTTGTGG
AAAGTTGTGTTGACCCAAGGGAAGTTATTGTTTTATACCCAATGATGATG
CCCAGTAATAAGAATTTCACACCCTCACGACCGTTACTTCACAATATTAA
AGATTTGACTGAGATTGTGAAAGGTAGTAAGTCTGTGTTTGCAGATTCCA
AGAAAATGTTATTAAACTATTTGGAAGGAATTCGAAATAATTTTGAGAAC
TGTAAAGAAGAGATTGATACTACCCTACTGAAACTTTATGCTGAGTGTAA
TCATGCAAACTTATCAGATCTGATCACAAATCAGAATTCGATTTTTCCTG
CAGAAGCCTTGACCTGGTTGACTCAGTGTAAAAGGCACCATGCTTTAGCA
TTATTTCATAGCTATTTACAGCAACATAAAAAATCCCTTGATATTTGGCA
CAAGTTGATGAAAGGTGAACTTACTGATGATAAATTCCCTGGCATATCAT
TTGTTGCACAATTTCTTACTGATTTGAAAGATATCAGCTTAGTATGGACA
AGTTCATCATGGGTCATGAAAGAAGACCAGAAATTAGGTGCTAGTATTTT
CATCAAGCGCGAAGATTCAAGCCTCAATTCTGATCAAGTTTCTGATTTCC
TTCAGAAATATCCAATTGCTTTACAATCTTATTTGGAGCATTTAGTGTAT
GAGAAAGAATCGAGATCCGAGCAGCATCATACGCACCTGGCGAATATTTA
TGTCGATCGCGTGGTTAGTTTATTGAATAATACCCTGAAGGAGAAATCAG
AGGTTGAAGAAGCTAGATCTAAGTTACAAAGTTTGCTCGAGTCCTCGTCA
CTATATCGTGTCTCAACTGTTTTACAAAAAATCTCACATTTCCCACTTTA
CAAAGAGTTGGCAACTTTATATGGCAAAATTGACCAACACCAGAAAGcat
tgaaaatcttgatttatCAATTGAAAGACTTCGATGCAGCAGAACACTAT
TGTGATACTATCGTTGATGGCAAGGAATCGTTTAAGAAACAACGTATCTT
CTTAGATCTTCTTCAAATCTATCTCTACCCAGATCCAAATGAGAGTAACC
TAGGACCTGAACATTACGTTGTGGCTGCTAAGACTCTACTTAACAAGCGT
CAAAAAGAGTTTAACATTGTCAGTGTTTTAAATATTATCCCTGAGGAATG
GACTGTGAACATGGTACAAGGATTTCTAAGAGGTTCAATGCGAGAACGTT
TCTCTGCTACCCGAGAATCGAAAATTGAATCCAATCTTCAAAAACAGTTT
TATTTGCAAACCAAAGAGCATCATATTACTCGCCACAAAGATGTTGTGAA
AATGACTGACGAACGCTTGTGCGACTTCTGCAGAAAGCCCTTCACTGAAT
CGACCGCTGCTCGCTACCCTAATGGGAAAGTGGTGCATATCAGGTGCTCT
GGGAATAAAAGTATGTGCCCTGTCACAGGGAAAAAGTTCAAATGACGCTC
ATTACTTCAATGAATTTTGATTCTCAGacttaatattttttaactCATAG
GTATACTTTAataggattaattttcgcggggacttaagtTCGCTGATGGC
ACTATTTGGTGACAATATTTTAACGATTTTTTGCCCTTTACcatcaaatc
atgcatgttgcttattgaaatacgcattatttgcgcctctttgatgccag
taaacatttcaaaaagtatttttatgacatttttttagttttatttagaa
atatttcgcggataaggCCTTGCCAAATTTctattgggacttaatttcgc
ggatgacactcAAATGCGAAATGCgaaatttgatcccgcgaaaatttatc
ctatATTAAAGTAATGTATTATAGATTCTTCCTGGtgattttggtgattt
tggtctgaataatttcaaaacttcctACAGTGGCAACTAGTTCGGCTACT
AAATGTTAGggattaaaatattttgagacgTTTTATTATTTTGCTCTTTA
GCTTTGAGTAAAAAAAGCCTAAAGTAAATCTCTTGTTTTCTAATTGAATC
TTTTAGCTTGGGGCAGGGCTTtggtcttcatttttttatcgctttttaat
gaattctTCGGGGTACGTGATCTGATtagaaattttaaagaattataatt
tttttatgaaataatttatTATGAAATGTTGACAAGGATTTATTAAATTA
AAGCCTTCCAAGTTCCCAGCTGAACTGAATGTAACATACATTTTCTGGAG
GAAGACTCCCTTAATTGGAAACCCTTTCCTACTTGGAGGGGGTAAACTAT
GTTTAATTCCTTGTTTAGTTGCGCCCTCTCGGCAATTTGAGAGCAATTAT
GTTTAAATCATGTACATTTACAAATTAGGTTTCGTTAAtaacttttgtaa
aaatttttatatttttcgacTTCtaagttttcttctttttagtaATTTAA
CTTCATTAGATACACAATTTCCACCTGATTATTTCACGTTAATTATACAA
ATCTTCAATAATGAATAAATGATACCTCTCACATCAATC
Run BLAST on NCBI

protein sequence of TCONS_00015658-protein

>TCONS_00015658-protein ID=TCONS_00015658-protein|Name=TCONS_00015658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=864bp
FRELIEKVMSIKTFDLVPVVDRVNPGGEKVKSSIQCIEQIFENLYLGTSD
CFIVHYCIEKGTNNIGKTIFMNRLQRNKNLALRKPIVQLLGLPTIGQILV
LIDGCVSVVSMYGLEFLRGTPSRDLLRNITVMARNTKPLTSTHGTCQICV
GTRRKTIQIITISADECTVLKEINLQGVPSTLSMYQQFICSNVGNQYYMI
DFTKSNLQELFMYEAHVKPVVKQLSSDEFLLSGPTDMMGMIVTSKGLSMH
QPLSFLDGCQSVAFSYPYILVLGESSITVHSILDQQQKQGISFTGGVLIT
DFDGQVFIAMQRSVMAFLPVPFNKQIQMLLIDKRIDEAFDLLIVSSKLNP
KQYDQTYVKQVKAQAAFVHFADGQFSKALPLFVESCVDPREVIVLYPMMM
PSNKNFTPSRPLLHNIKDLTEIVKGSKSVFADSKKMLLNYLEGIRNNFEN
CKEEIDTTLLKLYAECNHANLSDLITNQNSIFPAEALTWLTQCKRHHALA
LFHSYLQQHKKSLDIWHKLMKGELTDDKFPGISFVAQFLTDLKDISLVWT
SSSWVMKEDQKLGASIFIKREDSSLNSDQVSDFLQKYPIALQSYLEHLVY
EKESRSEQHHTHLANIYVDRVVSLLNNTLKEKSEVEEARSKLQSLLESSS
LYRVSTVLQKISHFPLYKELATLYGKIDQHQKALKILIYQLKDFDAAEHY
CDTIVDGKESFKKQRIFLDLLQIYLYPDPNESNLGPEHYVVAAKTLLNKR
QKEFNIVSVLNIIPEEWTVNMVQGFLRGSMRERFSATRESKIESNLQKQF
YLQTKEHHITRHKDVVKMTDERLCDFCRKPFTESTAARYPNGKVVHIRCS
GNKSMCPVTGKKFK
Run BLAST on NCBI

transcript from alignment at sc0000215:177268..180972+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015658 ID=TCONS_00015658|Name=TCONS_00015658|organism=Clytia hemisphaerica|type=transcript|length=3705bp|location=Sequence derived from alignment at sc0000215:177268..180972+ (Clytia hemisphaerica)
TTTAGAGAATTAATAGAAAAAGTTATGAGTATAAAGACATTTGACCTTGT
CCCGGTTGTGGACAGGGTCAACCCCGGTGGAGAGAAAGTAAAAAGCTCAA
TCCAATGCATTgaacagatttttgaaaatttgtatttgGGAACATCAGAC
TGTTTCATTGTTCATTACTGTATTGAGAAAGGCACAAATAACATTGGTAA
AACTATTTTCATGAATCGTCTTCAAAGGAATAAGAACCTTGCATTACGTA
AACCTATCGTACAGTTGCTAGGGCTACCGACCATCGGGCAGATTCTTGTT
TTGATTGATGGCTGTGTATCCGTTGTTTCAATGTATGGCCTTGAGTTTTT
ACGTGGAACTCCCAGTAGAGATTTACTTCGAAACATAACAGTAATGGCAA
GGAATACTAAGCCACTTACCTCAACCCATGGTACTTGTCAAATTTGTGTT
GGAACAAGGCGCAAAACTATTCAGATCATCACAATCTCTGCTGATGAATG
TACAGTTTTGAAAGAAATCAATTTGCAAGGTGTACCCAGCACTTTATCTA
TGTATCAACAATTTATATGCTCCAATGTGGGGAATCAATACTACATGATT
GATTTCACAAAATCAAACCTCCAGGAATTGTTCATGTATGAAGCTCACGT
TAAACCAGTTGTAAAGCAACTTTCTTCAGATGAATTTCTTCTCAGTGGAC
CGACTGATATGATGGGTATGATTGTAACATCAAAGGGACTTTCAATGCAT
CAACCATTAAGTTTCTTAGATGGCTGTCAATCTGTGGCTTTCTCTTACCC
CTATATTTTAGTTCTTGGTGAATCAAGCATTACTGTTCATAGTATCCTTg
atcaacaacaaaaacaaggAATATCATTCACTGGAGGTGTTTTGATCACA
GATTTCGATGGGCAAGTTTTCATTGCAATGCAAAGATNATCATTCACTGG
AGGTGTTTTGATCACAGATTTCGATGGGCAAGTATTCATTGCAATGCAAA
GATCGGTCATGGCTTTTTTACCTGTTCCTTTTAACAAACAGATTCAAATG
TTGTTGATTGATAAACGTATTGATGAAGCATTTGATCTTCTTATAGTAAG
CAGTAAGCTTAACCCGAAACAATATGATCAAACATATGTTAAACAAGTAA
AAGCACAAGCCGCGTTCGTTCATTTTGCAGATGGACAGTTTTCAAAAGCA
CTACCCTTGTTTGTGGAAAGTTGTGTTGACCCAAGGGAAGTTATTGTTTT
ATACCCAATGATGATGCCCAGTAATAAGAATTTCACACCCTCACGACCGT
TACTTCACAATATTAAAGATTTGACTGAGATTGTGAAAGGTAGTAAGTCT
GTGTTTGCAGATTCCAAGAAAATGTTATTAAACTATTTGGAAGGAATTCG
AAATAATTTTGAGAACTGTAAAGAAGAGATTGATACTACCCTACTGAAAC
TTTATGCTGAGTGTAATCATGCAAACTTATCAGATCTGATCACAAATCAG
AATTCGATTTTTCCTGCAGAAGCCTTGACCTGGTTGACTCAGTGTAAAAG
GCACCATGCTTTAGCATTATTTCATAGCTATTTACAGCAACATAAAAAAT
CCCTTGATATTTGGCACAAGTTGATGAAAGGTGAACTTACTGATGATAAA
TTCCCTGGCATATCATTTGTTGCACAATTTCTTACTGATTTGAAAGATAT
CAGCTTAGTATGGACAAGTTCATCATGGGTCATGAAAGAAGACCAGAAAT
TAGGTGCTAGTATTTTCATCAAGCGCGAAGATTCAAGCCTCAATTCTGAT
CAAGTTTCTGATTTCCTTCAGAAATATCCAATTGCTTTACAATCTTATTT
GGAGCATTTAGTGTATGAGAAAGAATCGAGATCCGAGCAGCATCATACGC
ACCTGGCGAATATTTATGTCGATCGCGTGGTTAGTTTATTGAATAATACC
CTGAAGGAGAAATCAGAGGTTGAAGAAGCTAGATCTAAGTTACAAAGTTT
GCTCGAGTCCTCGTCACTATATCGTGTCTCAACTGTTTTACAAAAAATCT
CACATTTCCCACTTTACAAAGAGTTGGCAACTTTATATGGCAAAATTGAC
CAACACCAGAAAGcattgaaaatcttgatttatCAATTGAAAGACTTCGA
TGCAGCAGAACACTATTGTGATACTATCGTTGATGGCAAGGAATCGTTTA
AGAAACAACGTATCTTCTTAGATCTTCTTCAAATCTATCTCTACCCAGAT
CCAAATGAGAGTAACCTAGGACCTGAACATTACGTTGTGGCTGCTAAGAC
TCTACTTAACAAGCGTCAAAAAGAGTTTAACATTGTCAGTGTTTTAAATA
TTATCCCTGAGGAATGGACTGTGAACATGGTACAAGGATTTCTAAGAGGT
TCAATGCGAGAACGTTTCTCTGCTACCCGAGAATCGAAAATTGAATCCAA
TCTTCAAAAACAGTTTTATTTGCAAACCAAAGAGCATCATATTACTCGCC
ACAAAGATGTTGTGAAAATGACTGACGAACGCTTGTGCGACTTCTGCAGA
AAGCCCTTCACTGAATCGACCGCTGCTCGCTACCCTAATGGGAAAGTGGT
GCATATCAGGTGCTCTGGGAATAAAAGTATGTGCCCTGTCACAGGGAAAA
AGTTCAAATGACGCTCATTACTTCAATGAATTTTGATTCTCAGacttaat
attttttaactCATAGGTATACTTTAataggattaattttcgcggggact
taagtTCGCTGATGGCACTATTTGGTGACAATATTTTAACGATTTTTTGC
CCTTTACcatcaaatcatgcatgttgcttattgaaatacgcattatttgc
gcctctttgatgccagtaaacatttcaaaaagtatttttatgacattttt
ttagttttatttagaaatatttcgcggataaggCCTTGCCAAATTTctat
tgggacttaatttcgcggatgacactcAAATGCGAAATGCgaaatttgat
cccgcgaaaatttatcctatATTAAAGTAATGTATTATAGATTCTTCCTG
GtgattttggtgattttggtctgaataatttcaaaacttcctACAGTGGC
AACTAGTTCGGCTACTAAATGTTAGggattaaaatattttgagacgTTTT
ATTATTTTGCTCTTTAGCTTTGAGTAAAAAAAGCCTAAAGTAAATCTCTT
GTTTTCTAATTGAATCTTTTAGCTTGGGGCAGGGCTTtggtcttcatttt
tttatcgctttttaatgaattctTCGGGGTACGTGATCTGATtagaaatt
ttaaagaattataatttttttatgaaataatttatTATGAAATGTTGACA
AGGATTTATTAAATTAAAGCCTTCCAAGTTCCCAGCTGAACTGAATGTAA
CATACATTTTCTGGAGGAAGACTCCCTTAATTGGAAACCCTTTCCTACTT
GGAGGGGGTAAACTATGTTTAATTCCTTGTTTAGTTGCGCCCTCTCGGCA
ATTTGAGAGCAATTATGTTTAAATCATGTACATTTACAAATTAGGTTTCG
TTAAtaacttttgtaaaaatttttatatttttcgacTTCtaagttttctt
ctttttagtaATTTAACTTCATTAGATACACAATTTCCACCTGATTATTT
CACGTTAATTATACAAATCTTCAATAATGAATAAATGATACCTCTCACAT
CAATC

Coding sequence (CDS) from alignment at sc0000215:177268..180972+

>TCONS_00015658 ID=TCONS_00015658|Name=TCONS_00015658|organism=Clytia hemisphaerica|type=CDS|length=5190bp|location=Sequence derived from alignment at sc0000215:177268..180972+ (Clytia hemisphaerica)
TTTAGAGAATTAATAGAAAAAGTTATGAGTATAAAGACATTTGACCTTGT
CCCGGTTGTGGACAGGGTCAACCCCGGTGGAGAGAAAGTAAAAAGCTCAA
TCCAATGCATTgaacagatttttgaaaatttgtatttgGGAACATCAGAC
TGTTTCATTGTTCATTACTGTATTGAGAAAGGCACAAATAACATTGGTAA
AACTATTTTCATGAATCGTCTTCAAAGGAATAAGAACCTTGCATTACGTA
AACCTATCGTACAGTTGCTAGGGCTACCGACCATCGGGCAGATTCTTGTT
TTGATTGATGGCTGTGTATCCGTTGTTTCAATGTATGGCCTTGAGTTTTT
ACGTGGAACTCCCAGTAGAGATTTACTTCGAAACATAACAGTAATGGCAA
GGAATACTAAGCCACTTACCTCAACCCATGGTACTTGTCAAATTTGTGTT
GGAACAAGGCGCAAAACTATTCAGATCATCACAATCTCTGCTGATGAATG
TACAGTTTTGAAAGAAATCAATTTGCAAGGTGTACCCAGCACTTTATCTA
TGTATCAACAATTTATATGCTCCAATGTGGGGAATCAATACTACATGATT
GATTTCACAAAATCAAACCTCCAGGAATTGTTCATGTATGAAGCTCACGT
TAAACCAGTTGTAAAGCAACTTTCTTCAGATGAATTTCTTCTCAGTGGAC
CGACTGATATGATGGGTATGATTGTAACATCAAAGGGACTTTCAATGCAT
CAACCATTAAGTTTCTTAGATGGCTGTCAATCTGTGGCTTTCTCTTACCC
CTATATTTTAGTTCTTGGTGAATCAAGCATTACTGTTCATAGTATCCTTg
atcaacaacaaaaacaaggAATATCATTCACTGGAGGTGTTTTGATCACA
GATTTCGATGGGCAAGTATTCATTGCAATGCAAAGATCGGTCATGGCTTT
TTTACCTGTTCCTTTTAACAAACAGATTCAAATGTTGTTGATTGATAAAC
GTATTGATGAAGCATTTGATCTTCTTATAGTAAGCAGTAAGCTTAACCCG
AAACAATATGATCAAACATATGTTAAACAAGTAAAAGCACAAGCCGCGTT
CGTTCATTTTGCAGATGGACAGTTTTCAAAAGCACTACCCTTGTTTGTGG
AAAGTTGTGTTGACCCAAGGGAAGTTATTGTTTTATACCCAATGATGATG
CCCAGTAATAAGAATTTCACACCCTCACGACCGTTACTTCACAATATTAA
AGATTTGACTGAGATTGTGAAAGGTAGTAAGTCTGTGTTTGCAGATTCCA
AGAAAATGTTATTAAACTATTTGGAAGGAATTCGAAATAATTTTGAGAAC
TGTAAAGAAGAGATTGATACTACCCTACTGAAACTTTATGCTGAGTGTAA
TCATGCAAACTTATCAGATCTGATCACAAATCAGAATTCGATTTTTCCTG
CAGAAGCCTTGACCTGGTTGACTCAGTGTAAAAGGCACCATGCTTTAGCA
TTATTTCATAGCTATTTACAGCAACATAAAAAATCCCTTGATATTTGGCA
CAAGTTGATGAAAGGTGAACTTACTGATGATAAATTCCCTGGCATATCAT
TTGTTGCACAATTTCTTACTGATTTGAAAGATATCAGCTTAGTATGGACA
AGTTCATCATGGGTCATGAAAGAAGACCAGAAATTAGGTGCTAGTATTTT
CATCAAGCGCGAAGATTCAAGCCTCAATTCTGATCAAGTTTCTGATTTCC
TTCAGAAATATCCAATTGCTTTACAATCTTATTTGGAGCATTTAGTGTAT
GAGAAAGAATCGAGATCCGAGCAGCATCATACGCACCTGGCGAATATTTA
TGTCGATCGCGTGGTTAGTTTATTGAATAATACCCTGAAGGAGAAATCAG
AGGTTGAAGAAGCTAGATCTAAGTTACAAAGTTTGCTCGAGTCCTCGTCA
CTATATCGTGTCTCAACTGTTTTACAAAAAATCTCACATTTCCCACTTTA
CAAAGAGTTGGCAACTTTATATGGCAAAATTGACCAACACCAGAAAGcat
tgaaaatcttgatttatCAATTGAAAGACTTCGATGCAGCAGAACACTAT
TGTGATACTATCGTTGATGGCAAGGAATCGTTTAAGAAACAACGTATCTT
CTTAGATCTTCTTCAAATCTATCTCTACCCAGATCCAAATGAGAGTAACC
TAGGACCTGAACATTACGTTGTGGCTGCTAAGACTCTACTTAACAAGCGT
CAAAAAGAGTTTAACATTGTCAGTGTTTTAAATATTATCCCTGAGGAATG
GACTGTGAACATGGTACAAGGATTTCTAAGAGGTTCAATGCGAGAACGTT
TCTCTGCTACCCGAGAATCGAAAATTGAATCCAATCTTCAAAAACAGTTT
TATTTGCAAACCAAAGAGCATCATATTACTCGCCACAAAGATGTTGTGAA
AATGACTGACGAACGCTTGTGCGACTTCTGCAGAAAGCCCTTCACTGAAT
CGACCGCTGCTCGCTACCCTAATGGGAAAGTGGTGCATATCAGGTGCTCT
GGGAATAAAAGTATGTGCCCTGTCACAGGGAAAAAGTTCAAATGATTTAG
AGAATTAATAGAAAAAGTTATGAGTATAAAGACATTTGACCTTGTCCCGG
TTGTGGACAGGGTCAACCCCGGTGGAGAGAAAGTAAAAAGCTCAATCCAA
TGCATTgaacagatttttgaaaatttgtatttgGGAACATCAGACTGTTT
CATTGTTCATTACTGTATTGAGAAAGGCACAAATAACATTGGTAAAACTA
TTTTCATGAATCGTCTTCAAAGGAATAAGAACCTTGCATTACGTAAACCT
ATCGTACAGTTGCTAGGGCTACCGACCATCGGGCAGATTCTTGTTTTGAT
TGATGGCTGTGTATCCGTTGTTTCAATGTATGGCCTTGAGTTTTTACGTG
GAACTCCCAGTAGAGATTTACTTCGAAACATAACAGTAATGGCAAGGAAT
ACTAAGCCACTTACCTCAACCCATGGTACTTGTCAAATTTGTGTTGGAAC
AAGGCGCAAAACTATTCAGATCATCACAATCTCTGCTGATGAATGTACAG
TTTTGAAAGAAATCAATTTGCAAGGTGTACCCAGCACTTTATCTATGTAT
CAACAATTTATATGCTCCAATGTGGGGAATCAATACTACATGATTGATTT
CACAAAATCAAACCTCCAGGAATTGTTCATGTATGAAGCTCACGTTAAAC
CAGTTGTAAAGCAACTTTCTTCAGATGAATTTCTTCTCAGTGGACCGACT
GATATGATGGGTATGATTGTAACATCAAAGGGACTTTCAATGCATCAACC
ATTAAGTTTCTTAGATGGCTGTCAATCTGTGGCTTTCTCTTACCCCTATA
TTTTAGTTCTTGGTGAATCAAGCATTACTGTTCATAGTATCCTTgatcaa
caacaaaaacaaggAATATCATTCACTGGAGGTGTTTTGATCACAGATTT
CGATGGGCAAGTATTCATTGCAATGCAAAGATCGGTCATGGCTTTTTTAC
CTGTTCCTTTTAACAAACAGATTCAAATGTTGTTGATTGATAAACGTATT
GATGAAGCATTTGATCTTCTTATAGTAAGCAGTAAGCTTAACCCGAAACA
ATATGATCAAACATATGTTAAACAAGTAAAAGCACAAGCCGCGTTCGTTC
ATTTTGCAGATGGACAGTTTTCAAAAGCACTACCCTTGTTTGTGGAAAGT
TGTGTTGACCCAAGGGAAGTTATTGTTTTATACCCAATGATGATGCCCAG
TAATAAGAATTTCACACCCTCACGACCGTTACTTCACAATATTAAAGATT
TGACTGAGATTGTGAAAGGTAGTAAGTCTGTGTTTGCAGATTCCAAGAAA
ATGTTATTAAACTATTTGGAAGGAATTCGAAATAATTTTGAGAACTGTAA
AGAAGAGATTGATACTACCCTACTGAAACTTTATGCTGAGTGTAATCATG
CAAACTTATCAGATCTGATCACAAATCAGAATTCGATTTTTCCTGCAGAA
GCCTTGACCTGGTTGACTCAGTGTAAAAGGCACCATGCTTTAGCATTATT
TCATAGCTATTTACAGCAACATAAAAAATCCCTTGATATTTGGCACAAGT
TGATGAAAGGTGAACTTACTGATGATAAATTCCCTGGCATATCATTTGTT
GCACAATTTCTTACTGATTTGAAAGATATCAGCTTAGTATGGACAAGTTC
ATCATGGGTCATGAAAGAAGACCAGAAATTAGGTGCTAGTATTTTCATCA
AGCGCGAAGATTCAAGCCTCAATTCTGATCAAGTTTCTGATTTCCTTCAG
AAATATCCAATTGCTTTACAATCTTATTTGGAGCATTTAGTGTATGAGAA
AGAATCGAGATCCGAGCAGCATCATACGCACCTGGCGAATATTTATGTCG
ATCGCGTGGTTAGTTTATTGAATAATACCCTGAAGGAGAAATCAGAGGTT
GAAGAAGCTAGATCTAAGTTACAAAGTTTGCTCGAGTCCTCGTCACTATA
TCGTGTCTCAACTGTTTTACAAAAAATCTCACATTTCCCACTTTACAAAG
AGTTGGCAACTTTATATGGCAAAATTGACCAACACCAGAAAGcattgaaa
atcttgatttatCAATTGAAAGACTTCGATGCAGCAGAACACTATTGTGA
TACTATCGTTGATGGCAAGGAATCGTTTAAGAAACAACGTATCTTCTTAG
ATCTTCTTCAAATCTATCTCTACCCAGATCCAAATGAGAGTAACCTAGGA
CCTGAACATTACGTTGTGGCTGCTAAGACTCTACTTAACAAGCGTCAAAA
AGAGTTTAACATTGTCAGTGTTTTAAATATTATCCCTGAGGAATGGACTG
TGAACATGGTACAAGGATTTCTAAGAGGTTCAATGCGAGAACGTTTCTCT
GCTACCCGAGAATCGAAAATTGAATCCAATCTTCAAAAACAGTTTTATTT
GCAAACCAAAGAGCATCATATTACTCGCCACAAAGATGTTGTGAAAATGA
CTGACGAACGCTTGTGCGACTTCTGCAGAAAGCCCTTCACTGAATCGACC
GCTGCTCGCTACCCTAATGGGAAAGTGGTGCATATCAGGTGCTCTGGGAA
TAAAAGTATGTGCCCTGTCACAGGGAAAAAGTTCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008737XLOC_008737Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015658-proteinTCONS_00015658-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015658-exon-sc0000215-1491911889:177268..178153TCONS_00015658-exon-sc0000215-1491911889:177268..178153Clytia hemisphaericaexon
TCONS_00015658-exon-sc0000215-1510915933:177268..178153TCONS_00015658-exon-sc0000215-1510915933:177268..178153Clytia hemisphaericaexon
TCONS_00015658-exon-sc0000215-1575043694:177268..178153TCONS_00015658-exon-sc0000215-1575043694:177268..178153Clytia hemisphaericaexon
TCONS_00015658-exon-sc0000215-1491911889:178220..180972TCONS_00015658-exon-sc0000215-1491911889:178220..180972Clytia hemisphaericaexon
TCONS_00015658-exon-sc0000215-1510915933:178220..180972TCONS_00015658-exon-sc0000215-1510915933:178220..180972Clytia hemisphaericaexon
TCONS_00015658-exon-sc0000215-1575043694:178220..180972TCONS_00015658-exon-sc0000215-1575043694:178220..180972Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:177268..180972 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.1125	8.04896	3.23232	2.87587	10.1685	7.01023	7.95222	8.76441	3.32086	4.71801	5.35488	2.83122	3.43952	2.93617	3.14222	4.27971	4.29389	3.98726	2.44094	2.2206	3.25018	3.36576	14.5635	13.5961	5.08619	6.85851	4.09883	3.05753	10.4356	10.1644
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019453VPS39/TGF_beta_rcpt-assoc_2
IPR000547Clathrin_H-chain/VPS_repeat
IPR011990TPR-like_helical_dom
IPR019452VPS39/TGF_beta_rcpt-assoc_1
IPR001180CNH_dom
IPR015943WD40/YVTN_repeat-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00015658 vs. Swiss-Prot (Human)
Match: TGFA1 (Transforming growth factor-beta receptor-associated protein 1 OS=Homo sapiens GN=TGFBRAP1 PE=1 SV=1)

HSP 1 Score: 538.495 bits (1386), Expect = 2.173e-173
Identity = 294/860 (34.19%), Postives = 489/860 (56.86%), Query Frame = 1 
Query:   22 VMSIKTFDLVPVVDRVNPGGEKVKSSIQCIEQIFENLYLGTSDCFIVHYCIEKGTNNIGKTIFMNRLQRNKNLALRKPIVQLLGLPTIGQILVLIDGCVSVVSMYGLEFLRGTPSRDLLRNITVMARNTKPLTSTHGTCQICV-GTRRKTIQIITISADECTVLKEINLQGVPSTLSMYQQFICSNVGNQYYMIDFTKSNLQELFMYEAHVKP-VVKQLSSDEFLLSGPTDMMGMIVTSKGLSMHQPLSFLDGCQSVAFSYPYILVLGESSITVHSILDQQQKQGISFTGGVLITDFDGQVFIAMQRSVMAFLPVPFNKQIQMLLIDKRIDEAFDLLIVSSKLNPKQYDQTYVKQVKAQAAFVHFADGQFSKALPLFVESCVDPREVIVLYPMMMPSNKNFTPSRPLLHNIKDLTEIVKGSKSVFADSKKMLLNYLEGIRNN--FENCKEEIDTTLLKLYAECNHANLSDLITNQNSIFPAEALTWLTQCKRHHALALFHSYLQQHKKSLDIWHKLMKGELTDDKFPGI-SFVAQFLTDLKDISLVWTSSSWVMKEDQKLGASIFIKR-----EDSSLNSDQVSDFLQKYPIALQSYLEHLVYEKESRSEQHHTHLANIYVDRVVSLLNNTLKEKSEVEEARXXXXXXXXXXXXYRVSTVLQKISHFPLYKELATLYGKIDQHQKALKILIYQLKDFDAAEHYCDTIVDGKESFKKQRIFLDLLQIYLYPDPNESNLGPEHYVVAAKTLLNKRQKEFNIVSVLNIIPEEWTVNMVQGFLRGSMRERFSATRESKIESNLQKQFYLQTKEHHITRHKDVVKMTDERLCDFCRKPFTESTAARYPNGKVVHIRCSGNKSMCP 2571
            +MSIK F LV  V+R    G+K + +I+C+E    +LY+GT+DCF+ H+ +E+     G   F    Q  ++L  +KP+ +L     + ++LVL D  +S+V+M  LE     PS   ++     A N  P++      ++C+   +R+TIQ+  +  D   ++KE++    P  +++   F+C  +  QY + +++    Q+LF Y +  +P +VK++   EFLL+GP  + GM  T  G+S   P+ + +     A S+PY++ L +  ITVHS+LDQQQKQ + F  G ++ DF+G+V +A  + V   +P+P  KQIQ LL  +R++EA  L   + +  PK+  Q   +++  QA F+ FA  QF +A  LF    +D RE+I LYP ++P++ +FT S P LH   DL ++ +G +   A  K+ L++YL  +R+       KE+IDT LLKLYAE +H +L DL+  +N     ++  WL + K++ AL L + Y  Q   ++ +W  ++ G++ D     +  ++  FLT   D  LVW  + WV+++ +++G  +F KR     + +S N D + + L+KYP AL  YLEHLV +K  + E++HTHLA +Y++ V+    +   + +E  E ++KL+ LL+ S LYRV  +L+++    L  E A L+GK+ +H+KAL IL+++L+DF AAE YC    +G++   +Q++F  LL IYL+  P    L      VAA  LLN+   EF+   VL ++P+ W+V ++  FL G+MR+   A R  ++   L +   L      +      ++++D++LC  C+ PF E    RYPNG +VH  C+ ++   P
Sbjct:    1 MMSIKAFTLVSAVERELLMGDKERVNIECVECCGRDLYVGTNDCFVYHFLLEERPVPAGPATFTATKQLQRHLGFKKPVNELRAASALNRLLVLCDNSISLVNMLNLE---PVPSGARIKGAATFALNENPVSGDPFCVEVCIISVKRRTIQMFLVYEDRVQIVKEVSTAEQPLAVAVDGHFLCLALTTQYIIHNYSTGVSQDLFPYCSEERPPIVKRIGRQEFLLAGPGGL-GMFATVAGISQRAPVHWSENVIGAAVSFPYVIALDDEFITVHSMLDQQQKQTLPFKEGHILQDFEGRVIVATSKGVYILVPLPLEKQIQDLLASRRVEEALVLAKGARRNIPKEKFQVMYRRILQQAGFIQFAQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFTRSHPPLHEYADLNQLTQGDQEKMAKCKRFLMSYLNEVRSTEVANGYKEDIDTALLKLYAEADHDSLLDLLVTENFCLLTDSAAWLEKHKKYFALGLLYHYNNQDAAAVQLWVNIVNGDVQDSTRSDLYEYIVDFLTYCLDEELVWAYADWVLQKSEEVGVQVFTKRPLDEQQKNSFNPDDIINCLKKYPKALVKYLEHLVIDKRLQKEEYHTHLAVLYLEEVLLQRASASGKGAEATETQAKLRRLLQKSDLYRVHFLLERLQGAGLPMESAILHGKLGEHEKALHILVHELQDFAAAEDYCLWCSEGRDPPHRQQLFHTLLAIYLHAGPTAHELA-----VAAVDLLNRHATEFDAAQVLQMLPDTWSVQLLCPFLMGAMRDSIHARRTMQVALGLARSENLIYTYDKMKLKGSSIQLSDKKLCQICQNPFCEPVFVRYPNGGLVHTHCAASRHTNP 851
The following BLAST results are available for this feature:
BLAST of TCONS_00015658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TGFA12.173e-17334.19Transforming growth factor-beta receptor-associate... [more]
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