TCONS_00015672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015672
Unique NameTCONS_00015672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015672 ID=TCONS_00015672|Name=TCONS_00015672|organism=Clytia hemisphaerica|type=transcript|length=2454bp
GTCAGTAATCAGTAAAATTACACTGCCAACAGGAGAACTAGTTGAACGAA
TTAGTTGGATGAACAAAAAACAGATAATTCAGGATAAATGATACCTGATC
AGCTGCACATGGAAAATTATTCACTGTCATGTGCAGCTGCTCCTCAGGAT
TTGGCTGAATGTCTGGGTGACCAGCCACAGGACCCTTGTATTGAGACGTG
ATAATGAATGAAACGTTGGATGGAAAGAAGCAGAAAGTAAAGTAATACCT
CAATAGTCCAGGGCTAACCTGGTGTGTTTAAGCTATGTGGTCTTTGGTCT
TTGTCCAGGTTGATGCTTGATAGCCAGCACAAGCCAAACAAGTTCCGCTT
GATCGGCCACTTCTGAGTATAAAACAACTCAGGTGGGTTGGGCTACCTTT
GGCCTAGGCCCCGAGATCAGCAGCCTCTACCCGGTATTCGTTTTCTTCTT
gacttttgtttatgttttttctgTTACTCTTAGacttagactcaaatttg
gactaatttgtgtttcttattcactaattcttaatggagtgaattttttt
atctgtctgtctgtctgtctctCTGTCTGTCTTTGTTTTCTTTGCTCATC
TTGTCATTCAGAGGGGGGGGGTTATTACTCATAACTCGTTCCTTATGTTT
TTGATCAAAGAAATTAACTTTCAATGGTCGGTTCTTGTCACTGCTTTTCT
TCCAGATACTTTCATGcgctgttttaaaatttttgaagatatGTTTTTCA
TCGGCTCCAAAGATGTTCGTAAACAGTATATACAGTTTGATAACTTCTTT
GGTATCGCACACACTCACTTCTTCGTCAGTTTTGTCCTTGCATTCAAAGA
CTCCATATAAAATGATATTGTTTCCCCTGGATTCGATGTCCATTTAGAAC
ATTTAAaggggaaaaattttcttcattgcCCAATCATGGTAAACAATCTA
TTATATACCACTATAATAATGAAACTCAATTTTTTAGAGTAAAAAGTGGT
AAGGAAAAGTGTTTAGAAAATACCCTTACTGTACTTGAATCTTAAAAGaa
gccaaaaaaaaacattgtatTATTTAGAATGGCTCCAGATCCAAATAAtg
tccatgaaaaaaatattgaaaatgaaatgaaaagtgaagaaaGTGTTGGC
AATGTTATGATTataaatgaagaagaatttgaagaaaatacaaGTAGCGG
GGATGATGATCAAAATGCTCAACACAATGCTGGTAGTGGTATTGAATATG
AAGGATATAAACTTTTACAACCTGATGATGGTACTAATGGAAACACAGCT
TTAGATACTTCAGATAGCAGTGATGATGAGGACGAGGATGAAGCTGTGTG
TAAACCAGATGATTATATCAATGGTTTTGCTTCTTTTGACGGACCTGTAG
TTAGTGGTGATGTCAATATTGACTACCAGCATTTGACATGTGGCGGTATT
GGTGATGAGTTGCCATCAACTGGTCTGGGTTTTCCAGAATTTATCCcaga
agatgaagatgaaaaagagcTACCAAGAGATGACAATATTGAAATGAACA
AAGATAAAGTAGAATTGGTAATGAATGCTATGGCCAACTTTACACTTCCC
CTAAACAACATACCAGAATGGGCAAAGAATATGTCTGATGGCAAATGGAC
AGAATCTTTAGCAAAATCTGTTCAGGGTAGCTCTAAACCCAATGcagatt
gaaaaataaaatggcTAGTCACAAAATGATACATGGTGCATGTTTTATTC
ATAAGAGGTAGCTAACAATTCTACAGGAGGAGATGGTGGTGTGACGTAGG
AAAGAGTTTGAAGTTTCATTTCCATGGTGTGTAATCAAATTTCCTGTTTA
ATTCAACTTAGAACATGCATTATACCATGTGTCCAATAAGTAATATTCAG
TAAATGAAAGAATAAAGGAAAAAGGATAGCAAGAAGGTGCTCTATCCTGA
TTATTTCCTGCTTCCGGGGCATAGATTCTTCAAGCCCATGCTGCTACGCT
CATGATGAAGTTTTATATTAAAGTAAAATCTGAAACTGTTGTATTGATTG
AGATGCatgaaacatatttttataGCAATTTAGATCgtttttgaaatact
ttttatattttagttttgtctatgaaaatttaatttatttggtAGTTCAC
TACCACTGTAAATATACAATTTGACCCAGTTTGACCATATCATAACTTGA
AACCATGTTATGTTTTGGAGAGGAAAAGAAACTGATACTACtcttttgga
attttcaaataatttggtctaaatttgaaaatataaaaaatatatatgaa
aGTAATTTACATCTCGGTTATTTTTTAAAAACGGAGTACTTTTTTCTAAT
GTGTGAAAAGTCTTGAGCTCGGAGGTTGCTTAAGAATGTTTATTTTGCAA
CTCTGCCTCATTTTCTGTCTCTTAGCAATTTTTCGTTAAAGGTTTTCTAc
ggga
Run BLAST on NCBI

protein sequence of TCONS_00015672-protein

>TCONS_00015672-protein ID=TCONS_00015672-protein|Name=TCONS_00015672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MAPDPNNVHEKNIENEMKSEESVGNVMIINEEEFEENTSSGDDDQNAQHN
AGSGIEYEGYKLLQPDDGTNGNTALDTSDSSDDEDEDEAVCKPDDYINGF
ASFDGPVVSGDVNIDYQHLTCGGIGDELPSTGLGFPEFIPEDEDEKELPR
DDNIEMNKDKVELVMNAMANFTLPLNNIPEWAKNMSDGKWTESLAKSVQG
SSKPNAD
Run BLAST on NCBI

transcript from alignment at sc0000215:97324..100440-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015672 ID=TCONS_00015672|Name=TCONS_00015672|organism=Clytia hemisphaerica|type=transcript|length=3117bp|location=Sequence derived from alignment at sc0000215:97324..100440- (Clytia hemisphaerica)
GTCAGTAATCAGTAAAATTACACTGCCAACAGGAGAACTAGTTGAACGAA
TTAGTTGGATGAACAAAAAACAGATAATTCAGGATAAATGATACCTGATC
AGCTGCACATGGAAAATTATTCACTGTCATGTGCAGCTGCTCCTCAGGAT
TTGGCTGAATGTCTGGGTGACCAGCCACAGGACCCTTGTATTGAGACGTG
ATAATGAATGAAACGTTGGATGGAAAGAAGCAGAAAGTAAAGTAATACCT
CAATAGTCCAGGGCTAACCTGGTGTGTTTAAGCTATGTGGTCTTTGGTCT
TTGTCCAGGTTGATGCTTGATAGCCAGCACAAGCCAAACAAGTTCCGCTT
GATCGGCCACTTCTGAGTATAAAACAACTCAGGTGGGTTGGGCTACCTTT
GGCCTAGGCCCCGAGATCAGCAGCCTCTACCCGGTATTCGTTTTCTTCTT
GACTTTTGTTTATGTTTTTTCTGTTACTCTTAGACTTAGACTCAAATTTG
GACTAATTTGTGTTTCTTATTCACTAATTCTTAATGGAGTGAATTTTTTT
ATCTGTCTGTCTGTCTGTCTCTCTGTCTGTCTTTGTTTTCTTTGCTCATC
TTGTCATTCAGAGGGGGGGGGTTATTACTCATAACTCGTTCCTTATGTTT
TTGATCAAAGAAATTAACTTTCAATGGTCGGTTCTTGTCACTGCTTTTCT
TCCAGATACTTTCATGCGCTGTTTTAAAATTTTTGAAGATATGTTTTTCA
TCGGCTCCAAAGATGTTCGTAAACAGTATATACAGTTTGATAACTTCTTT
GGTATCGCACACACTCACTTCTTCGTCAGTTTTGTCCTTGCATTCAAAGA
CTCCATATAAAATGATATTGTTTCCCCTGGATTCGATGTCCATTTAGAAC
ATTTAAAGGGGAAAAATTTTCTTCATTGCCCAATCATGGTAAACAATCTA
TTATATACCACTATAATAATGAAACTCAATTTTTTAGAGTAAAAAGTGGT
AAGGAAAAGTGTTTAGAAAATACCCTTACTGTACTTGAATCTTAAAAGAA
GCCAAAAAAAAACATTGTATTATTTAGAATGGCTCCAGATCCAAATAATG
TCCATGAAAAAAATATTGAAAATGAAATGAAAAGTGAAGAAAGTGTTGGC
AATGTTATGATTATAAATGAAGAAGAATTTGAAGAAAATACAAGTAGCGG
GGATGATGATCAAAATGCTCAACACAATGCTGGTAGTGGTATTGAATATG
AAGGATATAAACTTTTACAACCTGATGATGGTACTAATGGAAACACAGCT
TTAGATACTTCAGATAGCAGTGATGATGAGGACGAGGATGAAGCTGTGTG
TAAACCAGATGATTATATCAATGGTTTTGCTTCTTTTGACGGACCTGTAG
TTAGTGGTGATGTCAATATTGACTACCAGGTACTTTCATATTATAAAGAC
CTGCCTAAAGAAATTGTAATAAAAAGCTGTAAAAAAATTGTAATAAGGTA
TGATGATCCTAAGGTCACCTCTTTTTGTGTCAAAACAATGTATAGATATT
TTGTTGCTTGAATTACAGTCTCTCAACTTTTCAGTTAATCAATAATATCC
CAAAAATGTGCTTTATTTCACCAAGATTGATAATTCATTGCTTCCCTATT
TAGCATTTGACATGTGGCGGTATTGGTGATGAGTTGCCATCAACTGGTCT
GGGTTTTCCAGAATTTATCCCAGAAGATGAAGATGAAAAAGAGCTACCAA
GAGATGACAATATTGAAATGAACAAAGGTGAATAGGGCATTTCACAGTCG
CAAAGCGTAATGGGTAATCAGGACCACTGTGCACTATTGAAGACTTACTA
TTGCTCCAAAGTTTTGAAATTTTTTGAAGATTTTTGCGTCTAGCCAACCG
GAAGTTGTTACTAGAGCACAACCAGTCTTGATTACCCATGATCCATTTCG
ATCATGAAATGGCCTATAAGAATTGGAAATACTTTCAGCTGTAGATTCAT
GGGTTTGCCAAACCCCTTTAATTAATTTCTTAGCCTGAGCTAGTAGCCCT
GTCTAGCTTCAATACTATTCACGATAGTGAATACTATTCAAGGAATAGTA
AAACAAGGGACAAAAAAGACATAACTTGCTGTGCTCTAAACATACAGCCT
TTTATGTAAATAATAATTAGCTTTAGGGAAACTATTGATGAAGTAAACTT
TTTTTCTAAATTACAGATAAAGTAGAATTGGTAATGAATGCTATGGCCAA
CTTTACACTTCCCCTAAACAACATACCAGAATGGGCAAAGAATATGTCTG
ATGGCAAATGGACAGAATCTTTAGCAAAATCTGTTCAGGGTAGCTCTAAA
CCCAATGCAGATTGAAAAATAAAATGGCTAGTCACAAAATGATACATGGT
GCATGTTTTATTCATAAGAGGTAGCTAACAATTCTACAGGAGGAGATGGT
GGTGTGACGTAGGAAAGAGTTTGAAGTTTCATTTCCATGGTGTGTAATCA
AATTTCCTGTTTAATTCAACTTAGAACATGCATTATACCATGTGTCCAAT
AAGTAATATTCAGTAAATGAAAGAATAAAGGAAAAAGGATAGCAAGAAGG
TGCTCTATCCTGATTATTTCCTGCTTCCGGGGCATAGATTCTTCAAGCCC
ATGCTGCTACGCTCATGATGAAGTTTTATATTAAAGTAAAATCTGAAACT
GTTGTATTGATTGAGATGCATGAAACATATTTTTATAGCAATTTAGATCG
TTTTTGAAATACTTTTTATATTTTAGTTTTGTCTATGAAAATTTAATTTA
TTTGGTAGTTCACTACCACTGTAAATATACAATTTGACCCAGTTTGACCA
TATCATAACTTGAAACCATGTTATGTTTTGGAGAGGAAAAGAAACTGATA
CTACTCTTTTGGAATTTTCAAATAATTTGGTCTAAATTTGAAAATATAAA
AAATATATATGAAAGTAATTTACATCTCGGTTATTTTTTAAAAACGGAGT
ACTTTTTTCTAATGTGTGAAAAGTCTTGAGCTCGGAGGTTGCTTAAGAAT
GTTTATTTTGCAACTCTGCCTCATTTTCTGTCTCTTAGCAATTTTTCGTT
AAAGGTTTTCTACGGGA

Coding sequence (CDS) from alignment at sc0000215:97324..100440-

>TCONS_00015672 ID=TCONS_00015672|Name=TCONS_00015672|organism=Clytia hemisphaerica|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000215:97324..100440- (Clytia hemisphaerica)
ATAAAGTAGAATTGGTAATGAATGCTATGGCCAACTTTACACTTCCCCTA
AACAACATACCAGAATGGGCAAAGAATATGTCTGATGGCAAATGGACAGA
ATCTTTAGCAAAATCTGTTCAGGGTAGCTCTAAACCCAATGCAGATTGAC
ATTTGACATGTGGCGGTATTGGTGATGAGTTGCCATCAACTGGTCTGGGT
TTTCCAGAATTTATCCCAGAAGATGAAGATGAAAAAGAGCTACCAAGAGA
TGACAATATTGAAATGAACAAAGATGGCTCCAGATCCAAATAATGTCCAT
GAAAAAAATATTGAAAATGAAATGAAAAGTGAAGAAAGTGTTGGCAATGT
TATGATTATAAATGAAGAAGAATTTGAAGAAAATACAAGTAGCGGGGATG
ATGATCAAAATGCTCAACACAATGCTGGTAGTGGTATTGAATATGAAGGA
TATAAACTTTTACAACCTGATGATGGTACTAATGGAAACACAGCTTTAGA
TACTTCAGATAGCAGTGATGATGAGGACGAGGATGAAGCTGTGTGTAAAC
CAGATGATTATATCAATGGTTTTGCTTCTTTTGACGGACCTGTAGTTAGT
GGTGATGTCAATATTGACTACCAGATAAAGTAGAATTGGTAATGAATGCT
ATGGCCAACTTTACACTTCCCCTAAACAACATACCAGAATGGGCAAAGAA
TATGTCTGATGGCAAATGGACAGAATCTTTAGCAAAATCTGTTCAGGGTA
GCTCTAAACCCAATGCAGATTGACATTTGACATGTGGCGGTATTGGTGAT
GAGTTGCCATCAACTGGTCTGGGTTTTCCAGAATTTATCCCAGAAGATGA
AGATGAAAAAGAGCTACCAAGAGATGACAATATTGAAATGAACAAAGATG
GCTCCAGATCCAAATAATGTCCATGAAAAAAATATTGAAAATGAAATGAA
AAGTGAAGAAAGTGTTGGCAATGTTATGATTATAAATGAAGAAGAATTTG
AAGAAAATACAAGTAGCGGGGATGATGATCAAAATGCTCAACACAATGCT
GGTAGTGGTATTGAATATGAAGGATATAAACTTTTACAACCTGATGATGG
TACTAATGGAAACACAGCTTTAGATACTTCAGATAGCAGTGATGATGAGG
ACGAGGATGAAGCTGTGTGTAAACCAGATGATTATATCAATGGTTTTGCT
TCTTTTGACGGACCTGTAGTTAGTGGTGATGTCAATATTGACTACCAGAT
AAAGTAGAATTGGTAATGAATGCTATGGCCAACTTTACACTTCCCCTAAA
CAACATACCAGAATGGGCAAAGAATATGTCTGATGGCAAATGGACAGAAT
CTTTAGCAAAATCTGTTCAGGGTAGCTCTAAACCCAATGCAGATTGACAT
TTGACATGTGGCGGTATTGGTGATGAGTTGCCATCAACTGGTCTGGGTTT
TCCAGAATTTATCCCAGAAGATGAAGATGAAAAAGAGCTACCAAGAGATG
ACAATATTGAAATGAACAAAGATGGCTCCAGATCCAAATAATGTCCATGA
AAAAAATATTGAAAATGAAATGAAAAGTGAAGAAAGTGTTGGCAATGTTA
TGATTATAAATGAAGAAGAATTTGAAGAAAATACAAGTAGCGGGGATGAT
GATCAAAATGCTCAACACAATGCTGGTAGTGGTATTGAATATGAAGGATA
TAAACTTTTACAACCTGATGATGGTACTAATGGAAACACAGCTTTAGATA
CTTCAGATAGCAGTGATGATGAGGACGAGGATGAAGCTGTGTGTAAACCA
GATGATTATATCAATGGTTTTGCTTCTTTTGACGGACCTGTAGTTAGTGG
TGATGTCAATATTGACTACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008747XLOC_008747Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015672-proteinTCONS_00015672-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015672-exon-sc0000215-1575043694:99012..100440TCONS_00015672-exon-sc0000215-1575043694:99012..100440Clytia hemisphaericaexon
TCONS_00015672-exon-sc0000215-1575043694:98664..98787TCONS_00015672-exon-sc0000215-1575043694:98664..98787Clytia hemisphaericaexon
TCONS_00015672-exon-sc0000215-1575043694:97324..98224TCONS_00015672-exon-sc0000215-1575043694:97324..98224Clytia hemisphaericaexon
TCONS_00015672-exon-sc0000215-1510915933:99012..100440TCONS_00015672-exon-sc0000215-1510915933:99012..100440Clytia hemisphaericaexon
TCONS_00015672-exon-sc0000215-1510915933:98664..98787TCONS_00015672-exon-sc0000215-1510915933:98664..98787Clytia hemisphaericaexon
TCONS_00015672-exon-sc0000215-1510915933:97324..98224TCONS_00015672-exon-sc0000215-1510915933:97324..98224Clytia hemisphaericaexon
TCONS_00015672-exon-sc0000215-1491911889:99012..100440TCONS_00015672-exon-sc0000215-1491911889:99012..100440Clytia hemisphaericaexon
TCONS_00015672-exon-sc0000215-1491911889:98664..98787TCONS_00015672-exon-sc0000215-1491911889:98664..98787Clytia hemisphaericaexon
TCONS_00015672-exon-sc0000215-1491911889:97324..98224TCONS_00015672-exon-sc0000215-1491911889:97324..98224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:97324..100440 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
103.049	106.313	86.8374	81.8504	13.0478	9.20564	11.3417	12.0775	10.1385	11.6933	8.03705	7.32889	6.56512	6.66726	7.19759	7.03886	13.6481	12.149	5.72844	7.61166	12.1516	11.6102	77.7249	69.4164	10.3782	8.0416	10.9986	9.45432	51.0613	64.446
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009685MEA1
Vocabulary: Biological Process
TermDefinition
GO:0007283spermatogenesis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007283 spermatogenesis
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top