TCONS_00015701 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015701
Unique NameTCONS_00015701
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2265

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015701 ID=TCONS_00015701|Name=TCONS_00015701|organism=Clytia hemisphaerica|type=transcript|length=2265bp
AAACAAGCAACGAAGGAGAGGCACGTTTTGTTTAACGAAGAAGATCTctg
ttcaaaatttcttttataaacaaACTTTGAAGAGCAGCCATAAATAAAGA
TATTTGAGCAGTCTGTCTGATAAAGTGGAAGAGAACTTTAATGTGCAAAA
ACGAACGAGACAAGATTTGTTGAAGAAAGCGattattttctgacatttta
gGGGAAGTTAGAAAATACAAGATGAGGATTCGGAAAGATTTTTTGACAAT
CAGTTTCTTTTTCATAATGGTGACTGGAGTTGCAGCTGAAGATGGTTGTA
ACGTCATCAACTGTAAATGTGACACTGCAGGTAAAAGAGTTTATGATTGC
GTCAACGTCAATGATACGATTCTAAGAATGATCGCTCAACAGATCAACAA
CGATACAATAGATTTGAGTATCACTGGACAGAATTTAACAACGTTTGATG
CACCCTTTTATCTTGAGAACTTGAACAATCTCGATTTAAGCGGGAACTCG
TTTAAAAGAATCCCTGAAAATTTAGCCAAGAAGTTTCCAAAACTTGGAGT
ATTGGAGCTGAAGGATAATTCAATTGATAAACTGGATCCAGAAGATTTTA
CAGGGTTGAGTAATTTGAATAAACTCAGAATGGATCGTAATCTTTTGACT
GAAATTAAAGGAGGAACCTTTATCGAGCTGAAGAATCTGAAACAACTATA
TGCCGATGAAAACCAAATTGAAACAGCTATATGCCGATGAAAACCAAATT
GAAACATTATCTGCCGATTCCTTCTCTGGTGCATCAAATCTTTTGAAcat
cgaaatgaaaaaaaacaaagtcaaGAGCCTCCCTGTTGGAATCTTCGACC
CATTGAAACCAAACAACCAATTGAAAATCGAACTTACAGAAAACTATCTG
ACTGAAATTCCAAATGGATTATTTACAAAATTAACAGAGTTCCAATTCAT
CCTTGCAGACAAGAATTTATTGACGAAGATTGGAGACACAGCGTTTCAAG
GAGTGCGTGCATATGCCATCAATATCAAGGATAACAAAATAACTGAACTC
TTGAAAAGCACTTTTGAAGGGGCACAACTTCAAATTCTTCAAGTAGATGA
TAATCCAATCAGATGCCAATGTTCCTTGAAAGATCTACACGGCCTTGTGG
ATCAAATGACTGGAACGTGCATCAATAAAACTTCAGCGGAAATAGACTCA
GCTGAATGGATTCGAGAAGAGTTGTGTAATGAATGCGAGGTTAATAACAC
TTGCCAGCATGGAGGTATCTGTGTACCAGTAGGCAAGATGGATATCAACT
GCAAATGTATTAATGACTACCACGGGAAGAATTGCCAGGATAAACCAATA
TGTGAATCTGTAACTTGCCAAAACAAGGGAACTTGTAAGAATCTCAGCCC
CTCTAACTACACTTGTGAATGCAAAGATAATTATTCTGGCAACCATTGTG
AGATTTTTAACGAGGACAACAGTTTAACGGTTGCAGAGATCGTTGGGATT
GTGCTtggtgttttgttgtttttcattctGCTTGTGGTGATTTATATGCT
CTGTAGAAAGAGATGTCAAAAGGGTGGAGACGGAAAAGCTAAAGCAGGAG
AAGGTGTACCTTTGAAAGGAGGCCCTGTCTCTGCTTGATACGAACGATGC
AGCGTTGCGTTCAATGGGTTGACTTGAAGGAAATAAATTTCTTCTTGGAG
GGTTTTATTACTCTAGAACTTTTGTTAAGGCTATATGGAAGTTGATCACA
AAGCTGGAGCTGacatttatttcatattttctttaAGCACGCCCAGAGAT
TTAAtggtgtttgtttttttgtacatttttgtgaCATTTAGGATTATTTG
ATACAAACTATTTGATAGATTGGTGTGTCAAACATTTCATCATAACAAAG
CGTTCAAAGTacttttgctttgttttgacaAAGGAGGAAACAAGAGCTGT
GGTTTGGTTGATAGTTTTACGTCTAATGTTTATTATTGAGTAATTTCATA
CAAGGTTTAAAATCGTCTTACATAAATATTGTAAATTATATTTAGTTTGT
GTTTATTTCATTAGGATTTTGTTTGTTATTTCTAGAAACTTGAAAATTCT
TATTATTACAAACAAATCATGAAAGAATTTACCTGCTACCGCTTGACCCA
GAAAAAGTATAAGGGTTTGATGGGTAACTGCGTTCGAAATAATGTGAGCT
TTGGTATCAAGgtgaattttgatttcaaaagcttataacttgagaaCCAC
TCCACTTAACTGTAC
Run BLAST on NCBI

protein sequence of TCONS_00015701-protein

>TCONS_00015701-protein ID=TCONS_00015701-protein|Name=TCONS_00015701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MPMKTKLKQLYADENQIETLSADSFSGASNLLNIEMKKNKVKSLPVGIFD
PLKPNNQLKIELTENYLTEIPNGLFTKLTEFQFILADKNLLTKIGDTAFQ
GVRAYAINIKDNKITELLKSTFEGAQLQILQVDDNPIRCQCSLKDLHGLV
DQMTGTCINKTSAEIDSAEWIREELCNECEVNNTCQHGGICVPVGKMDIN
CKCINDYHGKNCQDKPICESVTCQNKGTCKNLSPSNYTCECKDNYSGNHC
EIFNEDNSLTVAEIVGIVLGVLLFFILLVVIYMLCRKRCQKGGDGKAKAG
EGVPLKGGPVSA
Run BLAST on NCBI

transcript from alignment at sc0000215:380593..383563-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015701 ID=TCONS_00015701|Name=TCONS_00015701|organism=Clytia hemisphaerica|type=transcript|length=2971bp|location=Sequence derived from alignment at sc0000215:380593..383563- (Clytia hemisphaerica)
AAACAAGCAACGAAGGAGAGGCACGTTTTGTTTAACGAAGAAGATCTCTG
TTCAAAATTTCTTTTATAAACAAACTTTGAAGAGCAGCCATAAATAAAGA
TATTTGAGCAGTCTGTCTGATAAAGTGGAAGAGAACTTTAATGTGCAAAA
ACGAACGAGACAAGATTTGTTGAAGAAAGCGATTATTTTCTGACATTTTA
GGGGAAGTTAGAAAATACAAGATGAGGATTCGGAAAGATTTTTTGACAAT
CAGTTTCTTTTTCATAATGGTGACTGGAGTTGCAGCTGAAGATGGTTGTA
ACGTCATCAACTGTAAATGTGACACTGCAGGTAAAAGAGTTTATGATTGC
GTCAACGTCAATGATACGATTCTAAGAATGATCGCTCAACAGATCAACAA
CGATACAATAGATTTGAGTATCACTGGACAGAATTTAACAACGTTTGATG
CACCCTTTTATCTTGAGAACTTGAACAATCTCGATTTAAGCGGGAACTCG
TTTAAAAGAATCCCTGAAAATTTAGCCAAGAAGTTTCCAAAACTTGGAGT
ATTGGAGCTGAAGGATAATTCAATTGATAAACTGGATCCAGAAGATTTTA
CAGGGTTGAGTAATTTGAATAAACTCAGAATGGATCGTAATCTTTTGACT
GAAATTAAAGGAGGAACCTTTATCGAGCTGAAGAATCTGAAACAACTATA
TGCCGATGAAAACCAAATTGAAACATTATCTGCCGATTCCTTCTCTGGTG
CATCAAATCTTTTGAACATCGAAATGAAAAAAAACAATGTCAAGAGCCTC
CCTGTTGGAATCTTCGACCCATTGAAACCAAACAACCAATTGAAAATCGA
ACTTACAGAAAACTATCTGACTGAAATTCCAAATGGATTATTTACAAAAT
TAACAGAGTTCCAATTCATCCTTGCAGACAAGAATTTATTGACGAAGATT
GGAGCCACAGCGTTTCAAGGAGTGCGTGCATATGCCATCAATATCAAGGA
TAACAAAATAACTGAACTCTTGAAAAGCACTTTTGAAGGGGCACAACTTC
AAATTCTTCAAGTAGATGATAATCCAATCAGATGCCAATGTTCCTTGAAA
GATCTACACGGCCTTGTGGATCAAATGACTGGANTAACGATACAATAGAT
TTGAGTATCACTGGACAGAATTTAACAACGTTTGATGCACCCTTTTATCT
TGAGAACTTGAACAATCTCGATTTAAGCGGGAACTCGTTTAAAAGAATCC
CTGAAAATTTAGCCAAGAAGTTTCCAAAACTTGGAGTATTGGAGCTGAAG
GATAATTCAATTGATAAACTGGAACCAGAAGATTTTACAGGGTTGAGTAA
TTTGAATAAACTCAGAATGGATCGTAATCTTTTGACTGAAATTAAAGGAG
GAACCTTTATCGAGCTGAAGAATCTGAAACAGCTATATGCCGATGAAAAC
CAAATTGAAACATTATCTGCCGATTCCTTCTCTGGTGCATCAAATCTTTT
GAACATCGAAATGAAAAAAAACAAAGTCAAGAGCCTCCCTGTTGGAATCT
TCGACCCATTGAAACCAAACAACCAATTGAAAATCGAACTTACAGAAAAC
TATCTGACTGAAATTCCAAATGGATTATTTACAAAATTAACAGAGTTCCA
ATTCATCCTTGCAGACAAGAATTTATTGACGAAGATTGGAGACACAGCGT
TTCAAGGAGTGCGTGCATATGCCATCAATATCAAGGATAACAAAATAACT
GAACTCTTGAAAAGCACTTTTGAAGGGGCACAACTTCAAATTCTTCAAGT
AGATGATAATCCAATCAGATGCCAATGTTCCTTGAAAGATCTACACGGCC
TTGTGGATCAAATGACTGGAACGTGCATCAATAAAACTTCAGCGGAAATA
GACTCAGCTGAATGGATTCGAGAAGAGTTGTGTAATGAATGCGAGGTTAA
TAACACTTGCCAGCATGGAGGTATCTGTGTACCAGTAGGCAAGATGGATA
TCAACTGCAAATGTATTAATGACTACCACGGGAAGAATTGCCAGGATAAA
CCAATATGTGAATCTGTAACTTGCCAAAACAAGGGAACTTGTAAGAATCT
CAGCCCCTCTAACTACACTTGTGAATGCAAAGATAATTATTCTGGCAACC
ATTGTGAGATTTTTAACGAGGACAACAGTTTAACGGTTGCAGAGATCGTT
GGGATTGTGCTTGGTGTTTTGTTGTTTTTCATTCTGCTTGTGGTGATTTA
TATGCTCTGTAGAAAGAGATGTCAAAAGGGTGGAGACGGAAAAGCTAAAG
CAGGAGAAGGTGTACCTTTGAAAGGAGGCCCTGTCTCTGCTTGATACGAA
CGATGCAGCGTTGCGTTCAATGGGTTGACTTGAAGGAAATAAATTTCTTC
TTGGAGGGTTTTATTACTCTAGAACTTTTGTTAAGGCTATATGGAAGTTG
ATCACAAAGCTGGAGCTGACATTTATTTCATATTTTCTTTAAGCACGCCC
AGAGATTTAATGGTGTTTGTTTTTTTGTACATTTTTGTGACATTTAGGAT
TATTTGATACAAACTATTTGATAGATTGGTGTGTCAAACATTTCATCATA
ACAAAGCGTTCAAAGTACTTTTGCTTTGTTTTGACAAAGGAGGAAACAAG
AGCTGTGGTTTGGTTGATAGTTTTACGTCTAATGTTTATTATTGAGTAAT
TTCATACAAGGTTTAAAATCGTCTTACATAAATATTGTAAATTATATTTA
GTTTGTGTTTATTTCATTAGGATTTTGTTTGTTATTTCTAGAAACTTGAA
AATTCTTATTATTACAAACAAATCATGAAAGAATTTACCTGCTACCGCTT
GACCCAGAAAAAGTATAAGGGTTTGATGGGTAACTGCGTTCGAAATAATG
TGAGCTTTGGTATCAAGGTGAATTTTGATTTCAAAAGCTTATAACTTGAG
AACCACTCCACTTAACTGTAC

Coding sequence (CDS) from alignment at sc0000215:380593..383563-

>TCONS_00015701 ID=TCONS_00015701|Name=TCONS_00015701|organism=Clytia hemisphaerica|type=CDS|length=1878bp|location=Sequence derived from alignment at sc0000215:380593..383563- (Clytia hemisphaerica)
AGCTATATGCCGATGAAAACCAAATTGAAACATTATCTGCCGATTCCTTC
TCTGGTGCATCAAATCTTTTGAACATCGAAATGAAAAAAAACAAAGTCAA
GAGCCTCCCTGTTGGAATCTTCGACCCATTGAAACCAAACAACCAATTGA
AAATCGAACTTACAGAAAACTATCTGACTGAAATTCCAAATGGATTATTT
ACAAAATTAACAGAGTTCCAATTCATCCTTGCAGACAAGAATTTATTGAC
GAAGATTGGAGACACAGCGTTTCAAGGAGTGCGTGCATATGCCATCAATA
TCAAGGATAACAAAATAACTGAACTCTTGAAAAGCACTTTTGAAGGGGCA
CAACTTCAAATTCTTCAAGTAGATGATAATCCAATCAGATGCCAATGTTC
CTTGAAAGATCTACACGGCCTTGTGGATCAAATGACTGGAACGTGCATCA
ATAAAACTTCAGCGGAAATAGACTCAGCTGAATGGATTCGAGAAGAGTTG
TGTAATGAATGCGAGGTTAATAACACTTGCCAGCATGGAGGTATCTGTGT
ACCAGTAGGCAAGATGGATATCAACTGCAAATGTATTAATGACTACCACG
GGAAGAATTGCCAGGATAAACCAATATGTGAATCTGTAACTTGCCAAAAC
AAGGGAACTTGTAAGAATCTCAGCCCCTCTAACTACACTTGTGAATGCAA
AGATAATTATTCTGGCAACCATTGTGAGATTTTTAACGAGGACAACAGTT
TAACGGTTGCAGAGATCGTTGGGATTGTGCTTGGTGTTTTGTTGTTTTTC
ATTCTGCTTGTGGTGATTTATATGCTCTGTAGAAAGAGATGTCAAAAGGG
TGGAGACGGAAAAGCTAAAGCAGGAGAAGGTGTACCTTTGAAAGGAGGCC
CTGTCTCTGCTTGAATGCCGATGAAAACCAAATTGAAACAGCTATATGCC
GATGAAAACCAAATTGAAACATTATCTGCCGATTCCTTCTCTGGTGCATC
AAATCTTTTGAACATCGAAATGAAAAAAAACAAAGTCAAGAGCCTCCCTG
TTGGAATCTTCGACCCATTGAAACCAAACAACCAATTGAAAATCGAACTT
ACAGAAAACTATCTGACTGAAATTCCAAATGGATTATTTACAAAATTAAC
AGAGTTCCAATTCATCCTTGCAGACAAGAATTTATTGACGAAGATTGGAG
ACACAGCGTTTCAAGGAGTGCGTGCATATGCCATCAATATCAAGGATAAC
AAAATAACTGAACTCTTGAAAAGCACTTTTGAAGGGGCACAACTTCAAAT
TCTTCAAGTAGATGATAATCCAATCAGATGCCAATGTTCCTTGAAAGATC
TACACGGCCTTGTGGATCAAATGACTGGAACGTGCATCAATAAAACTTCA
GCGGAAATAGACTCAGCTGAATGGATTCGAGAAGAGTTGTGTAATGAATG
CGAGGTTAATAACACTTGCCAGCATGGAGGTATCTGTGTACCAGTAGGCA
AGATGGATATCAACTGCAAATGTATTAATGACTACCACGGGAAGAATTGC
CAGGATAAACCAATATGTGAATCTGTAACTTGCCAAAACAAGGGAACTTG
TAAGAATCTCAGCCCCTCTAACTACACTTGTGAATGCAAAGATAATTATT
CTGGCAACCATTGTGAGATTTTTAACGAGGACAACAGTTTAACGGTTGCA
GAGATCGTTGGGATTGTGCTTGGTGTTTTGTTGTTTTTCATTCTGCTTGT
GGTGATTTATATGCTCTGTAGAAAGAGATGTCAAAAGGGTGGAGACGGAA
AAGCTAAAGCAGGAGAAGGTGTACCTTTGAAAGGAGGCCCTGTCTCTGCT
TGAATGCCGATGAAAACCAAATTGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008759XLOC_008759Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015701-proteinTCONS_00015701-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015701-exon-sc0000215-1575043694:382840..383563TCONS_00015701-exon-sc0000215-1575043694:382840..383563Clytia hemisphaericaexon
TCONS_00015701-exon-sc0000215-1575043694:380593..382133TCONS_00015701-exon-sc0000215-1575043694:380593..382133Clytia hemisphaericaexon
TCONS_00015701-exon-sc0000215-1510915933:382840..383563TCONS_00015701-exon-sc0000215-1510915933:382840..383563Clytia hemisphaericaexon
TCONS_00015701-exon-sc0000215-1510915933:380593..382133TCONS_00015701-exon-sc0000215-1510915933:380593..382133Clytia hemisphaericaexon
TCONS_00015701-exon-sc0000215-1491911889:382840..383563TCONS_00015701-exon-sc0000215-1491911889:382840..383563Clytia hemisphaericaexon
TCONS_00015701-exon-sc0000215-1491911889:380593..382133TCONS_00015701-exon-sc0000215-1491911889:380593..382133Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:380593..383563 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.2638	30.3019	8.11524	7.30192	0.545727	0.861509	3.31232	4.6888	6.06814	150.727	16.1139	25.7725	97.3137	86.0957	115.183	102.737	31.1847	59.6299	62.0905	92.401	1.79353	2.08859	11.4052	9.82761	1.36745	2.33977	357.48	227.839	234.228	202.391
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR026906LRR_5
IPR032675L_dom-like
IPR013032EGF-like_CS
Blast
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BLAST of TCONS_00015701 vs. Swiss-Prot (Human)
Match: LRC15 (Leucine-rich repeat-containing protein 15 OS=Homo sapiens GN=LRRC15 PE=2 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 4.624e-18
Identity = 34/85 (40.00%), Postives = 43/85 (50.59%), Query Frame = 3 
Query:  465 ENLNNLDLSGNSFKRIPENLAKKFPKLGVLELKDNSIDKLDPEDFTGLSNLNKLRMDRNLLTEIKGGTFIELKNLKQLYADENQI 719
             NL  L L GN  + IP+        L  L L  NS+  + P  F  L NL  LR+  N LT+I  GTF  L NL++L   +NQI
Sbjct:  149 SNLKELQLHGNHLEYIPDGAFDHLVGLTKLNLGKNSLTHISPRVFQHLGNLQVLRLYENRLTDIPMGTFDGLVNLQELALQQNQI 233

HSP 2 Score: 54.6842 bits (130), Expect = 4.624e-18
Identity = 35/134 (26.12%), Postives = 68/134 (50.75%), Query Frame = 1 
Query:  718 LKQLYADENQIETLSADSFSGASNLLNIEMKKNKVKSLPVGIFDPLKPNNQLKIELTENYLTEIPNGLFTKLTEFQFILADKNLLTKIGDTAFQGVRAYA-INIKDNKITELLKSTFEG-AQLQILQVDDNPIR 1113
            L++LY   N I  L    F     L  + +  N +K L  GIF P+   N  ++ L +N+++ +P+ +F+ L + Q ++  +N ++ I   AF G+     +++  N + +L  + F   A LQ + + +N +R
Sbjct:  247 LQRLYLSNNHISQLPPSVFMQLPQLNRLTLFGNSLKELSPGIFGPMP--NLRELWLYDNHISSLPDNVFSNLRQLQVLILSRNQISFISPGAFNGLTELRELSLHTNALQDLDGNVFRMLANLQNISLQNNRLR 378
The following BLAST results are available for this feature:
BLAST of TCONS_00015701 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC154.624e-1840.00Leucine-rich repeat-containing protein 15 OS=Homo ... [more]
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