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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015702 ID=TCONS_00015702|Name=TCONS_00015702|organism=Clytia hemisphaerica|type=transcript|length=2166bp
GGAATGTATAGTTTTGATGCGGTTTGAGAAAAgataaactttttttgata
aaagttcgCTTATAATGAAAAGTCCACGTCTAGATTTTTGTTAGAGACTC
GTATTGTAAAGACATTTATTTTGATTGAGTCTGTCTGAGAGGAGGATAGG
ATTTAAAGGCGGAAAAATGGAGTTTAAAGAAAGTCCTTGCAAGAAATGGA
ATTCCCACCAACTCCAATAGGAGAACGAAAGCTTTCACCAGCACCTGGCA
AAAGTCATTTTTCAACCAAGCAATTACCGAAGAGGATGGCTAGTCAAGAT
TTAGATGACTCACATCGTAGTTACGAGACCATCGAACAGTTACGAGCACG
TTTGAAGCAGAATTATTTAGAGGCGAAACGGCAAcgcgaaaaatatttga
atttgagTCCAACTCGTAAGAAGGACAGTGCTAAGAATTTAAATGGATAC
CGTTCAAAAACCCAACAACAACCTGTTTTCAAGAACTATAAACAAAAATC
TGAAGTCCAAGAACGAACAAACGGAGTTGTTAAGTTCGATAATCAACTAT
CAGTCAACGGCGTTCGAACAAATAGCCCGAACGATCAATCTACGTCTGAA
TTATCACAAGCTCTTTCTAACAAGAAAACAACAAGCGATCGTGAAATAAT
ACCGACCGTCTATTTAGGTGATCAATCCAATCTGAAATCAAGAGACTCTA
CTAGTAATTTGAACGgattttcaaaacaagaaagttTTGACCAACACCGT
TCACCACCACCGAAGACCAGTGAAAAACCACAAGGCTATAAAACGAACAA
TGCCTCAAAATCAACGGTAAAATCTCCAAAACAGATGCATCAAATGTCGA
GAGATAATTCAATCGATCTAGATCGACCTTCGAATCAAAATCcaggatcg
acgaatctaaccCGCAAGAACAGTCTTAAGAACTTGGTCAAGAGGAGCGA
CAGTCGGAGTAGCATAAAGAAAGACATTAAGCGTTCACCTGAGATTAATC
ATAATGATATCGATAATGTGCTGACTAATCATAATATAAATGATGACATc
agcaaaaagaaaatacaCCATGAAGAAGTGAAAGGAGAAGAAGAGggtAA
CGAATTCGATGTTATGGACATGTTAGCGAATTGGTAGATGGCATGGTTAA
ACTTATACAAATATGTGTCATGTATCTCGCGTATTTAACATGGAAGTAGC
CACCGAGCCACCAACAGAACTAATGAACAATAGGGTATATGTTCTGGACG
TGCTTGAAATCAATTAGCTACAGACAATCGATGCAACAATAGAGACAATT
TGTGAATTGTGATCCTTTACTTGTTTGAAATGAATTATTTTACCCGGTCG
AGACAATATGGATCCAAATAAAGCTAATAGCATCCTGTTTTATTCATGTC
AAATATTAACGTATTGTTGATGTTAAAAGGAAATGCTTTATCAGATTATA
TTTCGACATcgtgtttgtttattttgattatGGTGAGCATGTCATGGTAT
ACAACATGGTAAATTATTTCCGCAGGTCAATATTTTTGCAGTATGTTCAA
ATAATATGTTGAGTTTGAAAGACTAGATAACGGTAGAAGCTAGTACCGAG
GTGGCAGAGGGTGACTGGGGAGCAGCCCCCCTCTAATGGGGTTACCAATA
GGAAAAACGCACCGCTGATTACCGATTTTGCatccttttccttttttttc
acatgaaatagcatttttagcaaaattttccagaaatttcAGGCTCACTG
CTTTCACCTGTTTTCCCCCAGTTTGCCTTAATATTTGGTAAGTCACCATT
GGTCATTGGCCAGCGCAGTATGttaatcaagttttttttaacCTGAATCA
AGAAATGCAGAAATACTATATTCTCATATTCTCATGTAAATAGCTTACAA
TATACAGTATTTATATTTTCgtacttttgaaaaatcagGAATAGAACAAT
GCGACAGTCCTTGAGataagaaacaaaaacatacaATTTATTTCCTGATA
CAGATACAGGGAGGGGAAAAATTCAACAGCTCGGCACAGACAGGattaaa
aataaatcacaaaccatgaaatttttgtgaattttggtTGGATTGGATTT
ATTTCATCCGAATGAATCTCTGATACAGAACTGTTTACGAGGAAATCATA
CATTTATCATAATGTC Run BLAST on NCBI transcript from alignment at sc0000215:388633..392771- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015702 ID=TCONS_00015702|Name=TCONS_00015702|organism=Clytia hemisphaerica|type=transcript|length=4139bp|location=Sequence derived from alignment at sc0000215:388633..392771- (Clytia hemisphaerica)
GGAATGTATAGTTTTGATGCGGTTTGAGAAAAGATAAACTTTTTTTGATA
AAAGTTCGCTTATAATGAAAAGTCCACGTCTAGATTTTTGTTAGAGACTC
GTATTGTAAAGACATTTATTTTGATTGAGTCTGTCTGAGAGGAGGATAGG
ATTTAAAGGCGGAAAAATGGAGTTTAAAGAAAGGTTGGTACTAATTCTCA
TTTCGCCATTTCGGTACTTGGTTACAAAAGAATAAGCATTTTAGGGCATA
AACAGCATAAACAGGAAATCCTTGAAGAACTATATTTTGAGGGTATGAAA
ACCGTCCGTAATAGGCATTTTCATAAATTACGTCACGAACATCACTTGCC
TCGTATTCAAACAATTACCATGGTTATTATGTCCCTCATAAAAAGTAGTT
TAAATAAAATCTGCTGGCGGAGTTAATCATCATGGCAATAATATCAAAAC
GAGGCAAGTGAGTGACGTAATTTGTGAAAAGGTCTATAGGAAGCAGGGTT
TTAAGAAATAGTGATGGTTAAAGCCATAAGTTTTCGAAAGAAAGATTTTT
GATTATCAAAGGCAACAAAACATGAAAGCATGGAGCGATTTCACTGGTAG
ATGCAAATTGAACTTCGTTTGTTTGTTATGTTTTACAAACAATTTCCATA
GTAGATTAGAAAATATTTTCTGCGGAAAGAAAATATTGACCTAAAACAGG
ACTTGGTTACCACTCATTGCAAAGCACATATCAAGTGCTCTAAGATGGAG
AATTTGAAGTAAGAGTGGGACTTTTTTTCGTAAACACTTCCTCGTAGGGT
TTTTTATAAAGATGCACCTTAGTTTTACGTATTAATAAATTGAGTACGGA
GGAGTATTCAAAGGTCGAGCGAGATATCTCCTTCGTTGGGACTGATTTTT
CTGTTTGTTTACTTTTTTGTAGTCCTTGCAAGAAATGGAATTCCCACCAA
CTCCAATAGGAGAACGAAAGCTTTCACCAGCACCTGGCAAAAGTCATTTT
TCAACCAAGCAATTACCGAAGAGGATGGCTAGTCAAGATTTAGATGACTC
ACATCGTAGTTACGAGACCATCGAACAGTTACGAGCACGTTTGAAGCAGA
ATTATTTAGAGGCGAAACGGCAACGCGAAAAATATTTGAATTTGAGTCCA
ACTCGTAAGAAGGACAGTGCTAAGAATTTAAATGGATACCGTTCAAAAAC
CCAACAACAACCTGTTTTCAAGAACTATAAACAAAAATCTGAAGTCCAAG
AACGAACAAACGGAGTTGTTAAGTTCGATAATCAACTATCAGTCAACGGC
GTTCGAACAAATAGCCCGAACGATCAATCTACGTCTGAATTATCACAAGC
TCTTTCTAACAAGAAAACAACAAGCGATCGTGAAATAATACCGACCGTCT
ATTTAGGTGATCAATCCAATCTGAAATCAAGAGACTCTACTAGTAATTTG
AACGGATTTTCAAAACAAGAAAGTTTTGACCAACACCGTTCACCACCACC
GAAGACCAGTGAAAAACCACAAGGCTATAAAACGAACAATGCCTCAAAAT
CAACGGTAAAATCTCCAAAACAGATGCATCAAATGTCGAGAGATAATTCA
ATCGATCTAGATCGACCTTCGAATCAAAATCCAGGATCGACGAATCTAAC
CCGCAAGAACAGTCTTAAGAACTTGGTCAAGAGGAGCGACAGTCGGAGTA
GCATAAAGAAAGACATTAAGCGTTCACCTGAGATTAATCATAATGATATC
GATAATGTGCTGACTAATCATAATATAAATGATGACATCAGCAAAAAGAA
AATACACCATGAAGAAGTGAAAGGAGAAGAAGAGGTAGATAGTTTACCTA
CAGTTTCTTTCTTACGTCAAAATGGATGTCTCTCCTCGCCAGTCTCCTTT
CTCACGTAGGAGTTCATTGATGCGTTCCACGCCCTAACACTTGACCCCAG
GGCAGATTTATGGCTCTTTTCACTTCAGATCCTAAAGTTTGACAGGATAC
AACTCTGAAACTAAGAGTTACTTAGTTACTAAAACACCCCTATCTCTGTG
CCCCAGTGGGAATGTTGAGAGCCCAGTGGGGTGGGAATTTTAAAATCTGA
AATTCACTGGGGTGCAAACTTTCATCAAATGTTGAGTGGGGTGGTAAAAA
TTTTCTTGATTTTCACTGAGGTTGAGAAACATTTTGGTAACTTTTTGCAT
GAGCTGACTTTCACCTGTAGATAATGGTTCCAGAAGAAGGGGGAGAAGAT
TCTAGCTGATTTATTTTTGAAAGGAAAGTTCTACTGGGGTATGTTTAAAT
CAGGATATTTTGAGTGGGGTATGTGTATATGTATACGGGATGTATACGTT
TATCGATCTGAATGGGCTATTTCTTAACTACAACATTTCAGCTGGGTGAG
TGATTTGTCCAGTGGGACGAAAATATGGGCCATTTATGGAAGAATTTTTC
ACTGGGGTGATAAGGGGGATTGATTCCACCGGGTGACAATATGTTAAGGA
TAATAAGATAGTTTTAGACCGGTCCCTAAGTACACACAGCTGGAACAGAA
AGATCAAACTCAACCATGATTAAGTTTTCATCAAAGTGTTTTGCTAACGC
AAAGATCTTCACTGAGTATTTGTACTGGAGGCAGTCTATTTTTTGTTTCA
TTGATTAAAAACACTATTTCAATTTGCGTTGACAGTTCTTGTGGTCTCTG
TTAAGTTTGAAAACACTCATCATCGATACTTCTAAGAGAGCGAATGGTTA
TTTCTGTCACACACAAAGTAAACAAATCCTATATTTGACAAGATAGGCTT
TCAACTTTCCTCTGTTCAACAATCAAAAAGGTTAATCCTTGTTCCAGCTA
TCTAACAATACAAAAAGACTTTTTCGATAGAATTATTCTCTTCCACGATA
CATACCACCAAAAATTAATTCTTGTAATGACCCATTTGACCCTTTTAAAC
TCTAGCATAATCATACTTCATGTTGGCATTTGGTTTATTAGGTGTAATAA
GGTTATTTTCCTACAGTGAAATTTCGAAAACAACAAGAGCTTTGAGGTAT
AATTATTTTTCTTTTTAGGGTAACGAATTCGATGTTATGGACATGTTAGC
GAATTGGTAGATGGCATGGTTAAACTTATACAAATATGTGTCATGTATCT
CGCGTATTTAACATGGAAGTAGCCACCGAGCCACCAACAGAACTAATGAA
CAATAGGGTATATGTTCTGGACGTGCTTGAAATCAATTAGCTACAGACAA
TCGATGCAACAATAGAGACAATTTGTGAATTGTGATCCTTTACTTGTTTG
AAATGAATTATTTTACCCGGTCGAGACAATATGGATCCAAATAAAGCTAA
TAGCATCCTGTTTTATTCATGTCAAATATTAACGTATTGTTGATGTTAAA
AGGAAATGCTTTATCAGATTATATTTCGACATCGTGTTTGTTTATTTTGA
TTATGGTGAGCATGTCATGGTATACAACATGGTAAATTATTTCCGCAGGT
CAATATTTTTGCAGTATGTTCAAATAATATGTTGAGTTTGAAAGACTAGA
TAACGGTAGAAGCTAGTACCGAGGTGGCAGAGGGTGACTGGGGAGCAGCC
CCCCTCTAATGGGGTTACCAATAGGAAAAACGCACCGCTGATTACCGATT
TTGCATCCTTTTCCTTTTTTTTCACATGAAATAGCATTTTTAGCAAAATT
TTCCAGAAATTTCAGGCTCACTGCTTTCACCTGTTTTCCCCCAGTTTGCC
TTAATATTTGGTAAGTCACCATTGGTCATTGGCCAGCGCAGTATGTTAAT
CAAGTTTTTTTTAACCTGAATCAAGAAATGCAGAAATACTATATTCTCAT
ATTCTCATGTAAATAGCTTACAATATACAGTATTTATATTTTCGTACTTT
TGAAAAATCAGGAATAGAACAATGCGACAGTCCTTGAGATAAGAAACAAA
AACATACAATTTATTTCCTGATACAGATACAGGGAGGGGAAAAATTCAAC
AGCTCGGCACAGACAGGATTAAAAATAAATCACAAACCATGAAATTTTTG
TGAATTTTGGTTGGATTGGATTTATTTCATCCGAATGAATCTCTGATACA
GAACTGTTTACGAGGAAATCATACATTTATCATAATGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015702-exon-sc0000215-1575043694:392589..392771 | TCONS_00015702-exon-sc0000215-1575043694:392589..392771 | Clytia hemisphaerica | exon |
| TCONS_00015702-exon-sc0000215-1575043694:390938..391849 | TCONS_00015702-exon-sc0000215-1575043694:390938..391849 | Clytia hemisphaerica | exon |
| TCONS_00015702-exon-sc0000215-1575043694:388633..389703 | TCONS_00015702-exon-sc0000215-1575043694:388633..389703 | Clytia hemisphaerica | exon |
| TCONS_00015702-exon-sc0000215-1510915933:392589..392771 | TCONS_00015702-exon-sc0000215-1510915933:392589..392771 | Clytia hemisphaerica | exon |
| TCONS_00015702-exon-sc0000215-1510915933:390938..391849 | TCONS_00015702-exon-sc0000215-1510915933:390938..391849 | Clytia hemisphaerica | exon |
| TCONS_00015702-exon-sc0000215-1510915933:388633..389703 | TCONS_00015702-exon-sc0000215-1510915933:388633..389703 | Clytia hemisphaerica | exon |
| TCONS_00015702-exon-sc0000215-1491911889:392589..392771 | TCONS_00015702-exon-sc0000215-1491911889:392589..392771 | Clytia hemisphaerica | exon |
| TCONS_00015702-exon-sc0000215-1491911889:390938..391849 | TCONS_00015702-exon-sc0000215-1491911889:390938..391849 | Clytia hemisphaerica | exon |
| TCONS_00015702-exon-sc0000215-1491911889:388633..389703 | TCONS_00015702-exon-sc0000215-1491911889:388633..389703 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000215 | supercontig | sc0000215:388633..392771 - |
Blast
The following BLAST results are available for this feature:
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