TCONS_00015707 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015707
Unique NameTCONS_00015707
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015707 ID=TCONS_00015707|Name=TCONS_00015707|organism=Clytia hemisphaerica|type=transcript|length=1674bp
TTCGATTAAAAATAGACTGCCGTGTgCAGAAACTAATACGAAAAAGAATC
AAATAATTCAAATGCAACCATGGTTACAACAGACGCGACGCAACAACAAA
CAACCGCTGAAAACACCCCGACACACACAACGTCTGGTTGTAAGAAAGTC
GTGGTCGTCGGTGATGGAAGTTGTGGGAAGACGTGTTTATTGATGTCTAT
AATCGAACGTGATGCACCTGACGGCTACGTACCCACAGTCTTCGAAACGT
ACGTCAAAGAAATCGACCACGGAAAAACGTCGTATGAAGTATCCTTTTAC
GATACGGCGGGACAGGATGTTTATGATCGCTTACGGCCGTTATCGTATCC
CGATACAGACGTTTTCTTAGTATGTTTTGCTGTGGATTCCCCGGACAGTT
TATATAATGCTTATGATAAATGGACACCTGAGGTTAAACATTTCGGACCT
AACGTACCATTTGTCTTAGTAGGGACCAAATGCGATTTACGTAGTGATGA
GAGCACGTTGAAGAGATTACGTAAAGCTAAACAAGAAGTCATTACGCAAG
AAGAAGGACGGGAAATGGCGAAAAAGCTTAAAGCTTCTGCTTACGTAGAA
TGTTCTGCGTTGACGGGGTTTAACGTTAATGAAGTAATTAGTACGGCGTT
GAAATCAGCCCTCAAGAAGCAACACAAACAATTGAACAAGTTGAAGCAAT
TAAGGTGCACTTTCTTGTGAAGGAGAATGGATCGAGTTATAGTGGACATC
CCAATGATAAGACCTAGGGAGTTTGGATGGAGGCAGTTTGATCTCNAATG
GCTTGAAATATAGTGGAAATCCCAATGATAAGACCTAGGGAGTTTGGATG
GAGGCAGTTTGATCTCTAGTGATTATTTAATCAATGACAATGAACTGCAC
TTAAATCCTAGCAGTAGTGCACACCATTGATCTGCGCGAAAACTTATTTT
CCGACTGGGACTAAATATGGCTCATTATTTAACCAAGATTGTCCGTTTGG
ATTTCAGAAATGCAACTGATTTTGGCTACCACCTACACAGTGGAATATCA
CACACCCTGTGACGGGAAGAATGCCAACATctcaagaagaagaaaataaa
cgaTAAATAAACTACATAACATTTCTTCCTTCTATCTTTTATGATATGAG
ATGTTTTCGGACATCagttttttgctaaattccgcaCTTAGCATTTATGA
TGTTATGAGCATCTTCTACCAAAGCGAATGTTTTTGGTTTAGAGAAGAAA
GAATGACGTCACCATTTATCAGGTCATCAATGACCAGTAGAATAACGTTA
TTGTACTTTTTGAGCATCTAACTCAACCGAAGAAGTTATGAAACAGTAGT
TACATCATATTGTACTGTGTTCGGAACTTAATTAGGTTGGTTCACGCACT
TCCTATTTAATTTGCTAATAACATATTTTGATGGCAATTAACAAATGGTT
CACCTGTTTGTCAGAATGGTAATAAAATAATTAGCTTTTTTCATagaatc
gcaaaattttctctctttATATTTTCGGATTCTCGATTATACCAACATAT
CAAAGACAATACCTAtaaaattttagatgaaattttaaaccaaaataaat
AAGTTTGTAAATATACAATTTGtgaatttttatatttattagtatttttt
atagaaaaaattacgtaatgtttt
Run BLAST on NCBI

protein sequence of TCONS_00015707-protein

>TCONS_00015707-protein ID=TCONS_00015707-protein|Name=TCONS_00015707-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MVTTDATQQQTTAENTPTHTTSGCKKVVVVGDGSCGKTCLLMSIIERDAP
DGYVPTVFETYVKEIDHGKTSYEVSFYDTAGQDVYDRLRPLSYPDTDVFL
VCFAVDSPDSLYNAYDKWTPEVKHFGPNVPFVLVGTKCDLRSDESTLKRL
RKAKQEVITQEEGREMAKKLKASAYVECSALTGFNVNEVISTALKSALKK
QHKQLNKLKQLRCTFL
Run BLAST on NCBI

transcript from alignment at sc0000215:414793..419404-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015707 ID=TCONS_00015707|Name=TCONS_00015707|organism=Clytia hemisphaerica|type=transcript|length=4612bp|location=Sequence derived from alignment at sc0000215:414793..419404- (Clytia hemisphaerica)
TTCGATTAAAAATAGACTGCCGTGTGGTATTTTTAATTCTTTTCTTCGAC
AAAGCCATCAATGCTTTCGTTTTGAGAAAGACAATAAACTTTAATAATAA
ATAGAAGAATGTTAATATCATTTTCAGCTTTTTGTCGCATTCAAAATTTG
CATCCTTTGATGGGGTTTCGTGTTTTATTAAATTTGTCTGAAACTTTGGA
ATCTCATTTTGTTTGAAGCCTTGAGTTGAAAACTGTCACTTTTTTCAGTT
AATGTTGTAGTGATACTGGTTGTTTGGATAACTTGGGTCTGTTAAGTATC
AGGATTGAAAGGTTTGAAGAAGGTGACACAGGCAACTTTTTTCCTTAGTG
GGGATAAAAATTCCTATTGAAATCCTAATGGGGATAGAAATTCTATTGTT
CCAAGGTTAAAAAACCCAGTCACCAGTGGGGATGGTTTTGGAGAGCAATT
TTTAAACATGGAATTTCGAGTGGGGATCGAGTGGGGATCAAAGTCAATTT
CCCATTGGGGCTGAAATTCAAGGGTATTTTCCAACCAGCGACGAAATTCT
TGCTTAGTTTTCCAGTGGGGCTGGGGTCCCAGCGGGTCTGTGACACAGGG
ATGTTTTTACTCTAACATATTTTGTCTTCCGAAACAGGGGGTTGAAAATG
TCCAAGCACCGAGATCAAACTTCACCATACGCCACTGCTTGAGATTGATT
CAGTAGGAACGAAGTCAATTTGATGCTTAAACCACCTCTCGCAATCTCTG
TTCGGGAAGTATTTGTAGCAATCATGTGAAATAATTCTCGCATAGAGCAT
TATGTCGTTCTGATCTAGTTAGTTCTATAGAAGACTTTGGTCATGACAAG
ATGCATAATGACATTCACACATTTGCTTTACAACTTAAACTTTTGTATTT
GACGTCATAGGGGAATTAACTTCTTTCACATTTTTCATTGTGTTCTTAAA
TAGTTTTTCTCAAGAACACCAGTCATCTGTAAAGTTCATCTAGCAACGTC
ATTCTACTGTAATTGCTTCTCAAGTCAACTAATCTTCATTGGCTAAATAA
ATCTTGGGNATTGCTTCTCAAGTCAACTATTTGGCTAAATGAATCTTGGG
CATTCTAAATGGAGAGTTCAGTTCAAATGTACACAAACGATATCTTTGTA
TTACGAAATATTCTGTTATTGTCTTGTGACTCAAAAATCAGACATTTTTT
TCATTCAATTGAAAATTTTTGCGAAAGATAGCATCGTAGAACATTATAAT
GACGAAAAAGAGTGGAATTTTTCTCATTTATTAAAATTCCTATGAAGGAT
GAATATTGCCTGAATTTTGACAGTTTTCATTTTTTGGTAAAATCATTACA
ATATCGTAATAAATTTCAGAATTAGCTGAATTCGTCACTTTTGGATTGAA
GGAGCAAAATCGATCTATCGTTCTATCATGCCCACTTGGAGGCTAGACTG
ATGAGATTAGAGAAACTAAGAAACCGAAAGGATAATAAATACTCTTAATG
TGAGACGGATTAGATAAGGATTAGAAATGAAAGCAGGTTCCTAAGGAAAA
GTGATCACAAAATGACGTTACTGTACTTTCAATAATAATGCTTGCTGATG
CAAAGTCTTGACAGAAAGTTAGACATGCTGCCAAGTGTCCAAAGGTCAGA
GTAGCAGATCCTACAAGAAACTGCAAGGACGAGACCTTCAGGCACGTAAT
AGCAATCTCGATAATTATTCAATAGTTTTCGTATGAGTATGATGAGTGTA
GTTCAACTTAGCAATGTTCGGTATTTTCTTCCAAGAATTTCAAGACATTT
TTATCTGATGATGGTTAACATGTTTGGGGTAGAGATAACAACAATACAAC
AATGACGTTGGAAAGGTTTAACTTGGTGATAGCATATTCAAAAGATAGTC
GTGATTTAATTCCTGCCTTTTCAAACGCATCCAAGATGACTTCAGTATTA
GTGTTGCGTCAAGGCTAGATAAAAAGTAGAAGTTTGTACCTAGACTAGAT
CGATAAATAAACGGTTGGAGATAAACAGTCGGTATTGGATTCTTTTTCTT
TTTCATTTTGATCTAGATGTTGTACTTTAAGATCTTCTGTTGCTATTGTG
TTCGAAAACCCGTGAGGCTTTTGATTGGTCAAGCGCTGAAATTCTATTGT
AATGTTACGTGACCTAGGTAGGATTTCCTACCTAACCTCGGCACACTTTT
CAGTCGAAGCACGACATCTAGGCCTTCGGGCTTTATAAATCTATGAAAAC
ACCCCCTTCTCACAGACTCGGTAGGATTTTTCAACCAGTATGGTCAAATT
AACGGACTTGTTCAAGATGGAAAAAAGAGTTGACAAAGCTTTATCACTCT
GGTTTTAGTTTTAGTGAAAAAAGTTTCAACTTCAGTATTGTGTTCTTATA
ATGACAAAGGTATTAAAAGCCAATAACTCTTGTTTTTATCATGTGTTTTG
AAAAAATAGCCACTTTTAGAGATTGGCTCGTTGCGGTTGTCTCAGAGACG
AAGAACAAAACATAAAACTTTTATTTTGGTAACCAGATCAATATTTGACT
TTTGAAAGATAAATATCTGGTGTAAGAAATATTGGCGAAGAGAAACAATA
GGATGGTATTGATAAGAAAGAAAGAAGATAGGTGTATGCTAACATTTTAA
TCTAATCATTATCATTTTGAGATAATTTGATTGAAGATGATAGATCAGGT
GTGTTCAGAATGAGCAAGTTTTTCGTTTGCCAGGACAGGGATGTTTTTGA
TTCATTGGTATATTTAGATGATAGTTAAGATGGGTATACTACTTGGTTCT
TTTTTGTCCTTTTGGTTTTGATCAAATGTTCTGGTACTGATGTTAACTAT
TTTGTGGGTTTAGAAAGTATACTTGAGGCACGAAATTAATTTTCTGGCCC
ATATACGATAATTTCAATCAGGGATTTTATAGGATTTTAACTATTTCACA
ATCTTTCATTACAGCAGAAACTAATACGAAAAAGAATCAAATAATTCAAA
TGCAACCATGGTTACAACAGACGCGACGCAACAACAAACAACCGCTGAAA
ACACCCCGACACACACAACGTCTGGTTGTAAGAAAGTCGTGGTCGTCGGT
GATGGAAGTTGTGGGAAGACGTGTTTATTGATGTCTATAATCGAACGTGA
TGCACCTGACGGCTACGTACCCACAGTCTTCGAAACGTACGTCAAAGAAA
TCGACCACGGAAAAACGTCGTATGAAGTATCCTTTTACGATACGGCGGGA
CAGGATGTTTATGATCGCTTACGGCCGTTATCGTATCCCGATACAGACGT
TTTCTTAGTATGTTTTGCTGTGGATTCCCCGGACAGTTTATATAATGCTT
ATGATAAATGGACACCTGAGGTTAAACATTTCGGACCTAACGTACCATTT
GTCTTAGTAGGGACCAAATGCGATTTACGTAGTGATGAGAGCACGTTGAA
GAGATTACGTAAAGCTAAACAAGAAGTCATTACGCAAGAAGAAGGACGGG
AAATGGCGAAAAAGCTTAAAGCTTCTGCTTACGTAGAATGTTCTGCGTTG
ACGGGGTTTAACGTTAATGAAGTAATTAGTACGGCGTTGAAATCAGCCCT
CAAGAAGCAACACAAACAATTGAACAAGTTGAAGCAATTAAGGTGCACTT
TCTTGTGAAGGAGAATGGATCGAGTTATAGTGGACATCCCAATGATAAGA
CCTAGGGAGTTTGGATGGAGGCAGTTTGATCTCNAATGGCTTGAAATATA
GTGGAAATCCCAATGATAAGACCTAGGGAGTTTGGATGGAGGCAGTTTGA
TCTCTAGTGATTATTTAATCAATGACAATGAACTGCACTTAAATCCTAGC
AGTAGTGCACACCATTGATCTGCGCGAAAACTTATTTTCCGACTGGGACT
AAATATGGCTCATTATTTAACCAAGATTGTCCGTTTGGATTTCAGAAATG
CAACTGATTTTGGCTACCACCTACACAGTGGAATATCACACACCCTGTGA
CGGGAAGAATGCCAACATCTCAAGAAGAAGAAAATAAACGATAAATAAAC
TACATAACATTTCTTCCTTCTATCTTTTATGATATGAGATGTTTTCGGAC
ATCAGTTTTTTGCTAAATTCCGCACTTAGCATTTATGATGTTATGAGCAT
CTTCTACCAAAGCGAATGTTTTTGGTTTAGAGAAGAAAGAATGACGTCAC
CATTTATCAGGTCATCAATGACCAGTAGAATAACGTTATTGTACTTTTTG
AGCATCTAACTCAACCGAAGAAGTTATGAAACAGTAGTTACATCATATTG
TACTGTGTTCGGAACTTAATTAGGTTGGTTCACGCACTTCCTATTTAATT
TGCTAATAACATATTTTGATGGCAATTAACAAATGGTTCACCTGTTTGTC
AGAATGGTAATAAAATAATTAGCTTTTTTCATAGAATCGCAAAATTTTCT
CTCTTTATATTTTCGGATTCTCGATTATACCAACATATCAAAGACAATAC
CTATAAAATTTTAGATGAAATTTTAAACCAAAATAAATAAGTTTGTAAAT
ATACAATTTGTGAATTTTTATATTTATTAGTATTTTTTATAGAAAAAATT
ACGTAATGTTTT

Coding sequence (CDS) from alignment at sc0000215:414793..419404-

>TCONS_00015707 ID=TCONS_00015707|Name=TCONS_00015707|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at sc0000215:414793..419404- (Clytia hemisphaerica)
ATGGTTACAACAGACGCGACGCAACAACAAACAACCGCTGAAAACACCCC
GACACACACAACGTCTGGTTGTAAGAAAGTCGTGGTCGTCGGTGATGGAA
GTTGTGGGAAGACGTGTTTATTGATGTCTATAATCGAACGTGATGCACCT
GACGGCTACGTACCCACAGTCTTCGAAACGTACGTCAAAGAAATCGACCA
CGGAAAAACGTCGTATGAAGTATCCTTTTACGATACGGCGGGACAGGATG
TTTATGATCGCTTACGGCCGTTATCGTATCCCGATACAGACGTTTTCTTA
GTATGTTTTGCTGTGGATTCCCCGGACAGTTTATATAATGCTTATGATAA
ATGGACACCTGAGGTTAAACATTTCGGACCTAACGTACCATTTGTCTTAG
TAGGGACCAAATGCGATTTACGTAGTGATGAGAGCACGTTGAAGAGATTA
CGTAAAGCTAAACAAGAAGTCATTACGCAAGAAGAAGGACGGGAAATGGC
GAAAAAGCTTAAAGCTTCTGCTTACGTAGAATGTTCTGCGTTGACGGGGT
TTAACGTTAATGAAGTAATTAGTACGGCGTTGAAATCAGCCCTCAAGAAG
CAACACAAACAATTGAACAAGTTGAAGCAATTAAGGTGCACTTTCTTGTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008761XLOC_008761Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015707-proteinTCONS_00015707-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015707-exon-sc0000215-1575043694:419379..419404TCONS_00015707-exon-sc0000215-1575043694:419379..419404Clytia hemisphaericaexon
TCONS_00015707-exon-sc0000215-1575043694:414793..416440TCONS_00015707-exon-sc0000215-1575043694:414793..416440Clytia hemisphaericaexon
TCONS_00015707-exon-sc0000215-1510915933:419379..419404TCONS_00015707-exon-sc0000215-1510915933:419379..419404Clytia hemisphaericaexon
TCONS_00015707-exon-sc0000215-1510915933:414793..416440TCONS_00015707-exon-sc0000215-1510915933:414793..416440Clytia hemisphaericaexon
TCONS_00015707-exon-sc0000215-1491911889:419379..419404TCONS_00015707-exon-sc0000215-1491911889:419379..419404Clytia hemisphaericaexon
TCONS_00015707-exon-sc0000215-1491911889:414793..416440TCONS_00015707-exon-sc0000215-1491911889:414793..416440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:414793..419404 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.64208	1.5162	3.9071	4.21968	0.620499	0.376238	0.424321	0.308754	1.22511	23.6516	3.1476	7.70627	33.5708	21.0521	17.0731	8.72167	8.671	20.9322	12.608	21.0204	2.12368	1.56371	5.2285	5.53519	4.83546	6.82533	87.3769	76.5633	2.04091	1.77709
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00015707 vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.266e-64
Identity = 101/173 (58.38%), Postives = 127/173 (73.41%), Query Frame = 1 
Query:  142 KKVVVVGDGSCGKTCLLMSIIERDAPDGYVPTVFETYVKEIDHGKTSYEVSFYDTAGQDVYDRLRPLSYPDTDVFLVCFAVDSPDSLYNAYDKWTPEVKHFGPNVPFVLVGTKCDLRSDESTLKRLRKAKQEVITQEEGREMAKKLKASAYVECSALTGFNVNEVISTALKSA 660
            KK+V+VGDG+CGKTCLL+   +   P+ YVPTVFE YV +I+      E++ +DTAGQ+ YDRLRPLSYPDTDV L+CF++DSPDSL N  +KWTPEVKHF PNVP +LVG K DLR+DE T + L K KQE +  EEGR+MA ++ A  Y+ECSA T   V EV   A ++A
Sbjct:    6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 178
The following BLAST results are available for this feature:
BLAST of TCONS_00015707 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOA2.266e-6458.38Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
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