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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015747 ID=TCONS_00015747|Name=TCONS_00015747|organism=Clytia hemisphaerica|type=transcript|length=820bp
TGGTGAAGGACGATGGTTCGGGAGATTCTTGTCTCGGAAATTTGACTTTa
gaactgaatttttttaattcattataCCTGCCAAGATGTTAACATGACCA
AACCAACGAAAGGAAAGACACGTGGTAGAGGATCACAATGTGCTGTCTGG
ATGTTATGGTATGAATCTTTGTTTCATTCATCCGTGATGAGCGAATCAAA
TATTGGTTTTGGATGTCACGGATCTATACCGTTCTTTCTGACCACGTCTA
GTCAGAGATTACTATTAACATCGTCGAACTCACCACCAGCATACAGGACC
GAGCCTTAACACTTTGGAAATCTGTTCAAACGACGGCGAAATTTAAAGAT
CCTGGAAGCacttttttcgtgattttttagACTTCAAAGCAAAACGTACA
ACCTTGGAATCTCTTCTATGGTCTTTTGGAAAACATGGTGCGGATTAGCT
CTGTATAACAGAAAGAATGTAGAGCTCAGTTAACCATGGTTGATGTTGAT
GCAGATGATCGTCACTGAAGATTGATGCAGGATACGACAATGACGTCACA
AtacttgtgttttttttttacttaaaaggAAACAAATAAAACTCtccgtc
ataaattttgaatcCCCTCAGATCCGCCACTGCACTTACTTCTATAGCTT
TTTTAGACCactttcaagaaatatttaatattaGCCCCATTCAGTTTTCA
ATCTCTATGAATAAATTTCTCAAAGGGGTTGAAATTTAGGGTATTTTCTA
AAACGGACAAAGTTTTAGCCAATTGGGTCTGTGAGACAAGGGTGTATTGC
CGTGATCATAGTAAGCCGTG Run BLAST on NCBI transcript from alignment at sc0000216:298722..301207+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015747 ID=TCONS_00015747|Name=TCONS_00015747|organism=Clytia hemisphaerica|type=transcript|length=2486bp|location=Sequence derived from alignment at sc0000216:298722..301207+ (Clytia hemisphaerica)
TGGTGAAGGACGATGGTTCGGGAGATTCTTGTCTCGGAAATTTGACTTTa
gaactgaatttttttaattcattataCCTGCCAAGATGTTAACATGACCA
AACCAACGAAAGGAAAGACACGTGGTAGAGGATCACAATGTGCTGTCTGG
ATGTTATGGTATGAATCTTTGGTATGTTTCGATCTAGTGGTTTTGCAGTT
TTGAGAAAGTTTAAAAGgcaatttgaatgtttttaagCTATAGATTTTCC
TCTCAGCCTCTATTTAAGAGAtcgttttttctcaaaacaagGCAATCTTC
AACTTTAATCTCAGTGTTTTGATTTTCGGTCTTGAATCTTGTTGTTTACT
TGAGAAATCATGTCTTTCTCATACATTAAGAAAAATTGTCTCGTGAAACA
CTTATTTTTGACGTTTCTTTAGGAAATTTGAATTGCTTTGTTTGCGGCAG
TTTTCGAAAGAGTACTCAATTAATTCTCTGTCAGGTAGTAAAAAACGAAA
TTAGCTTTTAATGGCAAGAGAGAGGGTGCGAAATGATATTTACTTTGGTG
CTCACATACATCAATTGAGTATTTTGTGAAGCTAGATTTTTTTGTACCGT
TAATGTTGGTTTGAGAATGTGCAATTTAAGGATTATACGTTTCTGTGTGT
TTTGAggttaatattttttttgttgaccTTGAAAATACAAACCTAATTGT
TCCTGATTAACATTACACACAAATGAAACCCATATTATAGGGATTAAAGT
AATTAACGATGAAAATAGTTTTGTCACTTGGAAAACAATatcttttgttt
caaattttattgcaacactctttgaaagaaaatttattgcTGAACAGTGA
CATCCAGTAACAGTTGTATTGCATTTCTGTTTTTATTTCACATTCTCAAA
AAAAGCAACAGTTAACTGAAAAGATAGTATCTTGGAAATAAGAATGTCTG
GTCGGGTTTTAGAATCTATAGTTTTGGTTCTGATTTTTCATGAATTCTTG
TTTGTAGGTTTTCTTGAAATGTCAATTTAAGGTTTGTACATATGGTGTAA
ACAATCCAGCATCATTATTTGTCAAATTGTTCGAGATTTGTAAGGATTAT
TGTGCGTTTAACTTGTTGCGTTAACGTTTCATGTGTgtaatgaattttca
aattcattatTATCTACTatgttctttataagaatacccaTAATAAGTTT
TTgaggccttcggatgttcttaacgtttagattttcaaccctgaaatgtt
ctcaacatgGTCTTATTTTCACCGATGTGGGAGTATTTTTGTACATGTTC
CCAAGATATATTTTAGATTCCGCAaggccttaaattgttcttaatactCT
GTATGGCTTTTGAAAGTCGAAAACTTTTTCGAAATGGGGTGCTTAGACAG
TTTATCTTATACCTTTTCTTATAGATCTTTAATCTTTGTTTTCAGTTTCA
TTCATCCGTGATGAGCGAATCAAATATTGGTTTTGGATGTCACGGATCTA
TACCGTTCTTTCTGACCACGTCTAGTCAGAGATTACTATTAACATCGTCG
AACTCACCACCAGCATACAGGACCGAGCCTTAACACTTTGGTATTGACTG
CAATACCCTTGCCTCACCACGGATTGCGCTATAGAGAAAATGTCATATAG
AACTTTGAAAATCGCTGCAGATTACAATACGATATAAGTTTGTATACCCC
CTGgatttattcattttttggGACCCATTAATAATATTCTGATGGATGTT
TGGTCAATTCGCTGCCAAAATAGTGTACTGTTACTAAGTTAATATATAGA
TATTTATCATGTTAATCGAGACGGCAGTTCTCCTGCTTTATGCTTTTTAC
GTAGATTTTGTTATTAAGTCGTCATTGTAAACTTCGTcagctatatcatt
gttttaaagttttaaaggttGCTCAGCTTGATCGTCCATgattattattt
taaaaacagattttttctctcgcttTTTTCAGGAAATCTGTTCAAACGAC
GGCGAAATTTAAAGATCCTGGAAGCacttttttcgtgattttttagACTT
CAAAGCAAAACGTACAACCTTGGAATCTCTTCTATGGTCTTTTGGAAAAC
ATGGTGCGGATTAGCTCTGTATAACAGAAAGAATGTAGAGCTCAGTTAAC
CATGGTTGATGTTGATGCAGATGATCGTCACTGAAGATTGATGCAGGATA
CGACAATGACGTCACAAtacttgtgttttttttttacttaaaaggAAACA
AATAAAACTCtccgtcataaattttgaatcCCCTCAGATCCGCCACTGCA
CTTACTTCTATAGCTTTTTTAGACCactttcaagaaatatttaatattaG
CCCCATTCAGTTTTCAATCTCTATGAATAAATTTCTCAAAGGGGTTGAAA
TTTAGGGTATTTTCTAAAACGGACAAAGTTTTAGCCAATTGGGTCTGTGA
GACAAGGGTGTATTGCCGTGATCATAGTAAGCCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015747-exon-sc0000216-1491911889:298722..298892 | TCONS_00015747-exon-sc0000216-1491911889:298722..298892 | Clytia hemisphaerica | exon |
| TCONS_00015747-exon-sc0000216-1510915933:298722..298892 | TCONS_00015747-exon-sc0000216-1510915933:298722..298892 | Clytia hemisphaerica | exon |
| TCONS_00015747-exon-sc0000216-1575043694:298722..298892 | TCONS_00015747-exon-sc0000216-1575043694:298722..298892 | Clytia hemisphaerica | exon |
| TCONS_00015747-exon-sc0000216-1491911889:300167..300311 | TCONS_00015747-exon-sc0000216-1491911889:300167..300311 | Clytia hemisphaerica | exon |
| TCONS_00015747-exon-sc0000216-1510915933:300167..300311 | TCONS_00015747-exon-sc0000216-1510915933:300167..300311 | Clytia hemisphaerica | exon |
| TCONS_00015747-exon-sc0000216-1575043694:300167..300311 | TCONS_00015747-exon-sc0000216-1575043694:300167..300311 | Clytia hemisphaerica | exon |
| TCONS_00015747-exon-sc0000216-1491911889:300704..301207 | TCONS_00015747-exon-sc0000216-1491911889:300704..301207 | Clytia hemisphaerica | exon |
| TCONS_00015747-exon-sc0000216-1510915933:300704..301207 | TCONS_00015747-exon-sc0000216-1510915933:300704..301207 | Clytia hemisphaerica | exon |
| TCONS_00015747-exon-sc0000216-1575043694:300704..301207 | TCONS_00015747-exon-sc0000216-1575043694:300704..301207 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000216 | supercontig | sc0000216:298722..301207 + |
Blast
The following BLAST results are available for this feature:
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