TCONS_00015751 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015751
Unique NameTCONS_00015751
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015751 ID=TCONS_00015751|Name=TCONS_00015751|organism=Clytia hemisphaerica|type=transcript|length=553bp
ATCAATTATCATCCATGATGACCACATTGACGGGAAATGCTTGATCAATT
TGAATTCAACATTCACAATTTTCTCACAGACGGAGGTATGAAGATTTGAG
TGATGAAGAAACAGGAAGAATATCAAAGTTGGTCAGTCAAAATTCACCAA
GACgtccaaagttttaaaattgatcGCAAGCAAAGAAAACagcatgaaat
tttaaaaaatggaaGCATGGCCactaaagaaaaagtaaagccaGGACTTC
ACATCTCATCAAGATTCCAGCCTCCGTAAACCAGTACTCGCATCAATATC
AACGTAACGAGAAGGAGCTTACTTTCTATCAGACCATTACAGCGTAGTCA
TATAGGATGCTTAATTATTGACTGGATGGCATAGCCCTTGGTAatgaaaa
tcatcatcatcatcatcatcatcatccttcgatctAGGTCCCAAGGAAAC
TACCCAGAGATGATGTCCCAATTAAAACAAATGTATGGTTTGACTGGAAA
ACCGTCAAAAACAGCGTGAAAGAATTATGGTACGAGCCTCCCTTATAATT
CAT
Run BLAST on NCBI

transcript from alignment at sc0000216:328648..331107+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015751 ID=TCONS_00015751|Name=TCONS_00015751|organism=Clytia hemisphaerica|type=transcript|length=2460bp|location=Sequence derived from alignment at sc0000216:328648..331107+ (Clytia hemisphaerica)
ATCAATTATCATCCATGATGACCACATTGACGGTgatccttttttatttt
gatcctTTACAGTTTGAACTCACTGCATACTTTGCAATCTTTCCAATTAT
GCAGGGAAAAATTTGGATTGCATGCTGTTGAGAGCTTAAGTATTCTACCT
CTCTTTTACCACCGTCCACATGTTTTTACTTGACATGCAAAAAACCTCTC
CTTAACTGAGAGCTTAATCCTATAAAAGCAGCTGGTACAATCGAAAGACC
ATGATCTGAGCCTAGATTACATAGTAAAAGACTGAATTTACTGTTTTATG
CTCCAAAGCAACTCTTTGTGTTTTCAAAATGACCCTAAGACAGGGGGGGT
GCTATTTGTAGCTTTAATAAGTAAGTGCAATTTTCCTGCATGACATAACT
TATATTATTTGCACTTTTTTGAcacaaataggtttctttttCCAGGGAAA
TGCTTGATCAATTTGAATTCAACATTCACAATTTTCTCACAGACGGAGGT
ATGAAGATTTGAGTGATGAAGAAACAGGTACAGGTCTTTGTATAatgtgt
ttttttaaataattttgagtTACCAGTAAATTTTGACTCAGCTCTTCTCT
TAATAGATTTAAAATTTACTTACAGTACAATGATTTCTATTGCATCTAAT
CTGGATATCCAGACATTTTTGGACAGTCTAGTTGAAGTATTTTTATCTAT
GGTTCCTCTGCATTCAAATCTGTGGATAAGTGATTGTTCGATGGTTGCAA
GATATAACCTTACGATATTGAGGTTCTTTGACAAACAGTTTTCAACAAGA
TGATAGATATTAATCACTTTTAAGACTGAAAATGGCTTTAGAGAATTAAT
TGAAACTAGCATCATCTTTAAGTATCATCCAGACCTGGTGGAACGACCGT
AAAAGTGGAGGGGCTGAAGGCTAAAATTAGTAAAATTTTGCTAggaaatt
aagaaaaaagtaGATTTTGATAAAGCATCCCCGCTTTCTCCAAGCCTGTC
CTCTGgagccaaatttcagcctataaGAGGTCACATCCTGTTCAAGTTGC
ACATCTTATAACACAGCATAAAACTATAACCATTcaatgatatgatatga
taaaCAATAATGAGTAACATGTAtctcattttaaatttttcgtctCCTAG
GAAGAATATCAAAGTTGGTCAGTCAAAATTCACCAAGACgtccaaagttt
taaaattgatcGCAAGCAAAGAAAACagcatgaaattttaaaaaatggaa
GCATGGCCactaaagaaaaagtaaagccaGGACTTCACATCTCATCAAGG
TCTCAGATAGTTTCATATAAACTAAATGAAGTTCATGATGTCCAAAATCT
GATTGataaaatgattttattgaagTTTATCAGCTGTTTTGTTCTCTATT
TTAATCAGTTTGAATAAATAAACAACATACCCTCCCACCACACAATTTTC
ATCTTCCCACCAGGTTTCCATTATTATTACTAAGCAAATTTTTGAATTCA
TTCAAGTGTTTCAAGATATAAGTATTCATTTGCATTAACTTTAGATTCCA
GCCTCCGTAAACCAGTACTCGCATCAATATCAACGTAACGAGAAGGAGCT
TACTTTCTATCAGACCATTACAGCGTAGTCATATAGGATGCTTAATTATT
GACTGGATGGCATAGCCCTTGGTAatgaaaatcatcatcatcatcatcat
catcatccttcgatctAGGTCCCAAGGAAACTACCCAGGTACAACAATTG
AAATCATAAGCAAATGTTTTTATCTTTGCTAACGTGTATCCTTACTATGT
CTCTTTTAAAGGTTAAAAGCTTCTCTCTATTTTTCAGAAGATTACTAAAC
AGGTCTAGTGTTTTCGTATCAGTGTACAGAATTATTGAACCATCAGTGGT
AGTTTGTACTGACCCTAAAGAATATTTTGTTTCTGGTCCAGCTTGAAATT
GTCTTCACCCGGGCtgcattctttattttttgaactttccaaatttttcc
aactttcccattttaacattttctacACACACACTTAAGTGATCTAAAAC
AATCTTTCCACATTTTTTATTCCGTACTCCTTCAATCCCAATTTCAcgga
tttttcttttcaaattttaatcgaaatctcatttttttaataatcgatca
aaaatttgatatttttttgacaaCACATGAAATTATGAGCATCTTTTTTG
TGAGTATAAAAggttttccattgtattttccgATTCTTACATTATCACCA
ACTAAGGATAAGCTGATGTAGGATTATTTGATTTTGTTAAtacttttcat
ttcatttctagGACAATTATCTCATGGTCAGGAGTTGTCTTCGATGAGGT
TTACTGTATCATAGAGATGATGTCCCAATTAAAACAAATGTATGGTTTGA
CTGGAAAACCGTCAAAAACAGCGTGAAAGAATTATGGTACGAGCCTCCCT
TATAATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008799XLOC_008799Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015751-exon-sc0000216-1491911889:328648..328679TCONS_00015751-exon-sc0000216-1491911889:328648..328679Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1510915933:328648..328679TCONS_00015751-exon-sc0000216-1510915933:328648..328679Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1575043694:328648..328679TCONS_00015751-exon-sc0000216-1575043694:328648..328679Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1491911889:329093..329174TCONS_00015751-exon-sc0000216-1491911889:329093..329174Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1510915933:329093..329174TCONS_00015751-exon-sc0000216-1510915933:329093..329174Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1575043694:329093..329174TCONS_00015751-exon-sc0000216-1575043694:329093..329174Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1491911889:329798..329946TCONS_00015751-exon-sc0000216-1491911889:329798..329946Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1510915933:329798..329946TCONS_00015751-exon-sc0000216-1510915933:329798..329946Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1575043694:329798..329946TCONS_00015751-exon-sc0000216-1575043694:329798..329946Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1491911889:330192..330385TCONS_00015751-exon-sc0000216-1491911889:330192..330385Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1510915933:330192..330385TCONS_00015751-exon-sc0000216-1510915933:330192..330385Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1575043694:330192..330385TCONS_00015751-exon-sc0000216-1575043694:330192..330385Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1491911889:331012..331107TCONS_00015751-exon-sc0000216-1491911889:331012..331107Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1510915933:331012..331107TCONS_00015751-exon-sc0000216-1510915933:331012..331107Clytia hemisphaericaexon
TCONS_00015751-exon-sc0000216-1575043694:331012..331107TCONS_00015751-exon-sc0000216-1575043694:331012..331107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:328648..331107 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0757	1.77274	0	0	1.77369	1.64728	0	1.7153	0	1.42374	1.02386	0	0.41914	0	1.17432	1.6857	1.38732	1.35581	0.877061	0.439478	1.15664	0	0	1.24018	0	0	0.448191	0.294825	0	1.50908
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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