TCONS_00015786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015786
Unique NameTCONS_00015786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length720

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015786 ID=TCONS_00015786|Name=TCONS_00015786|organism=Clytia hemisphaerica|type=transcript|length=720bp
NTCATTCTCGTTGATCATTTCGCTTGAGTTCTTTCGTGCAAGTTTCTTGT
GTGTTTCTCTCAACTCGAGTAAGTATTCTGTTTTCCAACGTTTCCAAAAG
TGTTCAACTGCTTGCTTCGTGTTTTCTGACAACTCAAAACTGTCACTGTT
GTCGTTTGTTGTATTTGTGGTACGTCCGAGACGTTTACCGTATGATAAAT
GATTCGGGGTGAGAGGTTCTTCTGTCAATTCGTCATAGATGAAGGTTAAA
GGACGGTTGTTGATTGTTCgttcaatttcaatcaataaCGAAAGAAATTC
ATCGTACTTCAGCGTTTTGTTGTTCAAAGCTTTATTCAAACACGTTTTCG
CGGATTTCACAAGTTTTTCTGTAAACCCATTAAACCAAGGTGCTTTCTCG
AGGCTAAACTTCCATCGAATTTGACAATTTGTAACAAAGTTTTGTACGTT
CTCTGCAGTGAACGTTGAACCTTTGTCTGAAAAGATTTCTTCTGGGATTC
CTCTGCGATTCATAAATCTCCTTAATACTTCAATGCACGACTCTCCACTG
TAGTCTGTAGCAATGTCTAGATATACAACCCGACTGGCTTGACATGTGAT
CAATGAAATCCATACCAAGTTTCACGTTGGCCATTATGCATTACCTTGTC
GTGGGCTTGCTTGATCAACAAATCAACAAGTGGACTGTTCGTAGGTAACC
ATATTGGATGCTTTGCGTNN
Run BLAST on NCBI

protein sequence of TCONS_00015786-protein

>TCONS_00015786-protein ID=TCONS_00015786-protein|Name=TCONS_00015786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MNRRGIPEEIFSDKGSTFTAENVQNFVTNCQIRWKFSLEKAPWFNGFTEK
LVKSAKTCLNKALNNKTLKYDEFLSLLIEIERTINNRPLTFIYDELTEEP
LTPNHLSYGKRLGRTTNTTNDNSDSFELSENTKQAVEHFWKRWKTEYLLE
LRETHKKLARKNSSEMINENX
Run BLAST on NCBI

transcript from alignment at sc0000216:227548..228267

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015786 ID=TCONS_00015786|Name=TCONS_00015786|organism=Clytia hemisphaerica|type=transcript|length=720bp|location=Sequence derived from alignment at sc0000216:227548..228267 (Clytia hemisphaerica)
NNACGCAAAGCATCCAATATGGTTACCTACGAACAGTCCACTTGTTGATT
TGTTGATCAAGCAAGCCCACGACAAGGTAATGCATAATGGCCAACGTGAA
ACTTGGTATGGATTTCATTGATCACATGTCAAGCCAGTCGGGTTGTATAT
CTAGACATTGCTACAGACTACAGTGGAGAGTCGTGCATTGAAGTATTAAG
GAGATTTATGAATCGCAGAGGAATCCCAGAAGAAATCTTTTCAGACAAAG
GTTCAACGTTCACTGCAGAGAACGTACAAAACTTTGTTACAAATTGTCAA
ATTCGATGGAAGTTTAGCCTCGAGAAAGCACCTTGGTTTAATGGGTTTAC
AGAAAAACTTGTGAAATCCGCGAAAACGTGTTTGAATAAAGCTTTGAACA
ACAAAACGCTGAAGTACGATGAATTTCTTTCGttattgattgaaattgaa
cGAACAATCAACAACCGTCCTTTAACCTTCATCTATGACGAATTGACAGA
AGAACCTCTCACCCCGAATCATTTATCATACGGTAAACGTCTCGGACGTA
CCACAAATACAACAAACGACAACAGTGACAGTTTTGAGTTGTCAGAAAAC
ACGAAGCAAGCAGTTGAACACTTTTGGAAACGTTGGAAAACAGAATACTT
ACTCGAGTTGAGAGAAACACACAAGAAACTTGCACGAAAGAACTCAAGCG
AAATGATCAACGAGAATGAN

Coding sequence (CDS) from alignment at sc0000216:227548..228267

>TCONS_00015786 ID=TCONS_00015786|Name=TCONS_00015786|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at sc0000216:227548..228267 (Clytia hemisphaerica)
ATGAATCGCAGAGGAATCCCAGAAGAAATCTTTTCAGACAAAGGTTCAAC
GTTCACTGCAGAGAACGTACAAAACTTTGTTACAAATTGTCAAATTCGAT
GGAAGTTTAGCCTCGAGAAAGCACCTTGGTTTAATGGGTTTACAGAAAAA
CTTGTGAAATCCGCGAAAACGTGTTTGAATAAAGCTTTGAACAACAAAAC
GCTGAAGTACGATGAATTTCTTTCGttattgattgaaattgaacGAACAA
TCAACAACCGTCCTTTAACCTTCATCTATGACGAATTGACAGAAGAACCT
CTCACCCCGAATCATTTATCATACGGTAAACGTCTCGGACGTACCACAAA
TACAACAAACGACAACAGTGACAGTTTTGAGTTGTCAGAAAACACGAAGC
AAGCAGTTGAACACTTTTGGAAACGTTGGAAAACAGAATACTTACTCGAG
TTGAGAGAAACACACAAGAAACTTGCACGAAAGAACTCAAGCGAAATGAT
CAACGAGAATGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008822XLOC_008822Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015786-exon-sc0000216-1491911889:227548..228267TCONS_00015786-exon-sc0000216-1491911889:227548..228267Clytia hemisphaericaexon
TCONS_00015786-exon-sc0000216-1510915933:227548..228267TCONS_00015786-exon-sc0000216-1510915933:227548..228267Clytia hemisphaericaexon
TCONS_00015786-exon-sc0000216-1575043694:227548..228267TCONS_00015786-exon-sc0000216-1575043694:227548..228267Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015786-proteinTCONS_00015786-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:227548..228267 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.38015	2.06186	1.59453	1.23052	12.9894	10.3805	12.5228	13.0876	5.24817	7.03059	7.46655	5.07459	7.44236	6.84926	5.93384	5.06691	3.27292	5.84218	2.76224	4.88893	8.91001	8.41097	4.16286	5.85715	3.75627	4.62089	5.09986	7.86414	9.46879	9.37493
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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