TCONS_00015791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015791
Unique NameTCONS_00015791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length803

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015791 ID=TCONS_00015791|Name=TCONS_00015791|organism=Clytia hemisphaerica|type=transcript|length=803bp
GCAAGTATCATACCACATTCCATTTTATCCTGCTCGTAAAACTTAAAAGA
TAGATTTGGGCAGGTACCTTATCTTCAGTGCATGGAGAACCTCCAAGTGT
GTTGTATAGACGTTTAAATTGAGCTTGAGAAGACCTTTTTGGAATTCTGC
GTTGAATATAATCTTCTTCAAGGCTTCGTGTGGTTTAGATAATGCCTTTA
GCCAATCATACTGATGTGATTTGTTATGGGGTGGTTAACTTGTGTAGTGG
TTTCCTGGAAATTCGTATCTGTCAACAATGTGAACAATCACGCTGTTAAA
CCGCTCTGTCAGCTCTTTTTCGTTTCCGTTGCAATTTCGTACCGCCCAAT
ACAAATGATTTAATATCATTGGAGCCCAATCTGCCAGCTTCTCGTATCAT
TCTCGAACTATATTCAAAGGCAAAATATATTGCAACCGTTCTCGTATTTC
CCGTGATTTTTATCGCAAAACAcccatgaaaatgaaatgatgaAGTTATA
TGAAAGCTTCAGAAAcaaggtttttcattttttgaagggacaaaaaaaaa
gaatatcaaataaaaatgaaaacgttaTTGATAATCTCAGTCCAATTTAC
TGGAATTCACTGTAAAATAAGCTTTTCAACTGTGACAACAATCTACGTCA
CAACCCATTACTTTCGGCATCCGGTTAAAAATTACGttttaaaacaagat
ggcgactattgatttttctttctctatttGTTAAACAAAAAGTGCTCATA
ATCTCCTTATGTGGAGCTTTTGAGGGAAAAGAGAAACGTTTTCGTAGATG
TTT
Run BLAST on NCBI

transcript from alignment at sc0000216:310493..311295

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015791 ID=TCONS_00015791|Name=TCONS_00015791|organism=Clytia hemisphaerica|type=transcript|length=803bp|location=Sequence derived from alignment at sc0000216:310493..311295 (Clytia hemisphaerica)
AAACATCTACGAAAACGTTTCTCTTTTCCCTCAAAAGCTCCACATAAGGA
GATTATGAGCACTTTTTGTTTAACaaatagagaaagaaaaatcaatagtc
gccatcttgttttaaaaCGTAATTTTTAACCGGATGCCGAAAGTAATGGG
TTGTGACGTAGATTGTTGTCACAGTTGAAAAGCTTATTTTACAGTGAATT
CCAGTAAATTGGACTGAGATTATCAAtaacgttttcatttttatttgata
ttctttttttttgtcccttcaaaaaatgaaaaaccttgTTTCTGAAGCTT
TCATATAACTtcatcatttcattttcatgggTGTTTTGCGATAAAAATCA
CGGGAAATACGAGAACGGTTGCAATATATTTTGCCTTTGAATATAGTTCG
AGAATGATACGAGAAGCTGGCAGATTGGGCTCCAATGATATTAAATCATT
TGTATTGGGCGGTACGAAATTGCAACGGAAACGAAAAAGAGCTGACAGAG
CGGTTTAACAGCGTGATTGTTCACATTGTTGACAGATACGAATTTCCAGG
AAACCACTACACAAGTTAACCACCCCATAACAAATCACATCAGTATGATT
GGCTAAAGGCATTATCTAAACCACACGAAGCCTTGAAGAAGATTATATTC
AACGCAGAATTCCAAAAAGGTCTTCTCAAGCTCAATTTAAACGTCTATAC
AACACACTTGGAGGTTCTCCATGCACTGAAGATAAGGTACCTGCCCAAAT
CTATCTTTTAAGTTTTACGAGCAGGATAAAATGGAATGTGGTATGATACT
TGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008827XLOC_008827Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015791-exon-sc0000216-1491911889:310493..311295TCONS_00015791-exon-sc0000216-1491911889:310493..311295Clytia hemisphaericaexon
TCONS_00015791-exon-sc0000216-1510915933:310493..311295TCONS_00015791-exon-sc0000216-1510915933:310493..311295Clytia hemisphaericaexon
TCONS_00015791-exon-sc0000216-1575043694:310493..311295TCONS_00015791-exon-sc0000216-1575043694:310493..311295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000216supercontigsc0000216:310493..311295 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.298634	0.308411	0.787771	1.24201	0.241635	0.437948	0.46073	0.40893	0.468537	0.353606	0.537356	0.272975	0.278057	0.131509	0.405725	0.122478	0.26902	0.275737	0.208844	0.692548	0.461978	0.253504	0.0952175	0.273131	0.224421	0.432034	1.31905	0.437015	0	0.135082
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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