|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015938 ID=TCONS_00015938|Name=TCONS_00015938|organism=Clytia hemisphaerica|type=transcript|length=1925bp
ggtgaaattaagaatataACACGACATCTAATGGAGGAAtgatattgaat
tttttcttatgagcggaattgaaaatgaagaagtttgaaagatcaaaatt
ctttttgctCTGCTTTCTTACGCTTTATATTCAATACATCGGTGCTAAAT
TTTATTCAACACATTCGATCAAGCAACCAGACACCAATTGTTTGGTAAAA
TTTTTGGAATCAAAAAGGAACTCACTGActgagtgtatctcacgatgtCG
AATAAAAGGACGAAGAAATTTGATGGTTGACTACAGATGTTATTGTGTAC
CTCATGATGAAAAAATTGAGGAGAATTGCAAGATTGTTGAATCTGAGCCA
GGAGAATCTGGTGGTAACAGCTATCTTTACCAATCTTCGATTCATGGTCC
GTGGGAATTGATTACTAATCAGTCGATTTGTTATGGTTCTCGCGATGACA
GCTTTGCAAAATTCAACTTACCAAGAGATGGGTACATTGCAAGTTTTCGC
ATGGTTCATATCAGTGGCTATGTTGGATGTCACTACAATAATGGTGGTTA
TTGGGGATGTAACAATTATTTCGATGCCAATGCTATCATGACTGTTATCA
CTGAATCTAATCATGAACCTTGGAGAGCCTTACAAAGTACACAAAGATCA
AGAACTACAAGTTTGGTACGGAAATGACGTGTTGGATAACTGGGAAGGTA
ATTGTGTATCTGGTATCAAGCATTGTATAGATGTTTTTGTGAGGTACCAT
TGACTAAATTGGATCAATCAAGTATTTACAAAACCTCACTATGCAAGTTC
GGATTTTTTAATTTAGTAAAGAAAAACACTTAAATTATCCAAACTTATTC
ACTTATTCACCACGCCGTTAACACAGCACCTCTGAAAATTTTGCCACTGC
AATATTTAGAATAAGATACAATGAATACTAAAGTAATGTTGAAGATGAGC
TGTTATATACACGTGAGAGGACCATCAGTGTATGCATGAATATCCAACAT
TCAAAGCTTACTATTATCATAGAACTCATGCAGAAGGACAAGTAACTTCA
AACATTGGAACATCCGCGAATTATTTAGAGAATGTTTTAATTACCTGATT
CATTTTTTATGGAGATTAATTACTCTTCTAAAATAAGTGAACCTCTCTGC
TGTATCCGAGACTGCAATTTTCTTGAGACTTTAACAGTTACTAAAGCTGT
TTCTTCAAATCATGAAAAAGCACTGCAACAGTAGTTGACAAAATGCGCAC
TGTAAAGCTAAGGGCACAAAATTGGGGAAAAAGCGAATTTTGGTTGGTGC
CTTGTTAGAATGGAAATATGGGGAAAACGcaaataacacccctgtgtcac
agacacggtggaaaaaataccctacattttcaaccccactgggaaattgc
cctatgattctatccccattgaaaattgaatgggaaaaattggactccaa
aaccatccacactggaatttttgagctggaaacaatagattttctatccc
cattgggatttcgatagaaattttcggaaattttcatccccactgaggga
aaaggttccaccggggcactgagacaggggtgtcaaataagttttgaaat
ttttcaaaagccaATTTTAAAGGTGCACGTACACCGCTACTGTATAATAA
GACAAAACTAGCGAACGAGCTGACAAGATGACAAAGCGACAAATCACCCG
TTGTGCACATAGAGGAGtaccaaaaatatgaaaaatagttATTATAATGT
GTtactttgatttattttttgcataCGTTGAATATAGGCCATATAGTGAC
CTCCCTGTTTGAAAGCTTGACAAGATGTTTCTgtgttatttttaaaagaa
tttgtcCGAATATAAATATTCTCAGTTAAAGTTAATTTTCTGTACTTTTA
ATAATTAAAATTTGCCATATTGAAg Run BLAST on NCBI transcript from alignment at sc0000222:409308..414404- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015938 ID=TCONS_00015938|Name=TCONS_00015938|organism=Clytia hemisphaerica|type=transcript|length=5097bp|location=Sequence derived from alignment at sc0000222:409308..414404- (Clytia hemisphaerica)
GGTGAAATTAAGAATATAACACGACATCTAATGGAGGAATGATATTGAAT
TTTTTCTTATGAGCGGAATTGAAAATGAAGAAGTTTGAAAGATCAAAATT
CTTTTTGCTCTGCTTTCTTACGCTTTATATTCAATACATCGGTGCTAAAT
TTTATTCAACACATTCGATCAAGCAACCAGACACCAATTGTTTGGTAAAA
TTTTTGGAATCAAAAAGGAACTCACTGACTGAGTGTATCTCACGATGTCG
AATAAAAGGACGAAGAAATTTGATGGTTGACTACAGATGTTATTGTGTAC
CTCATGATGAAAAAATTGAGGAGAATTGCAAGATTGTTGAATCTGAGCCA
GGAGAATCTGGTGGTAACAGCTATCTTTACCAATGTAAGTACAATGTATC
ATTGTATGTTTTTTTTTTCTCAAATGTTAAAAATGTTTCAAATCTGCCAA
AATTAGATTTTTTGCTTCGCAAAAATTACCTCTAAAGCTCTAAGGCGAAT
AATAAATGATTTGAGTGCTCAAATTTCATAATTTCGAAATTTTTCGTTTT
TTGGAGAGATTTGAGTAGTTATAGAGACTCGTTTATAAAGACTTTATATT
CAGCTCAAAGCTCAAGAAAATGAGTTCAAGTTATGGAGAGACTCAAGCTT
TAGAGCTTCGGGGTCATAGATAGAAGCAGTTGACGAGCTATCTTTTTTCA
AAATATATGTTGACATTTTCCAAGAGACATTTTTCTTCTTAAAAGTGGCC
AAAAATCATTTTCTAGGGGAGCAGATTTTCTTTAAAGTATATATGTTGGC
CAATTCTAATAGCTGATGACGTCATTTCTGGCCAACATTTCCATTTTTCT
AGGAGAAGGCGAATAATTTAAAATATCTAGCTGGGTGTACAAATATGATT
TTCTCGGACAGGATGAACAGATATCTTAAAAATAACAAATAGTCAAATCC
TTAACTGTTCTCATACTTTTGTCAGAGTGAATTTTTTAAGGTGATGGATC
CAATTTTATAGGAGAGACTACCTGTGTTTTTGGGTTTTTGGAACAACGGA
TCGATATTTCTAGAAATGATATTTTTTCAATATTTGACCAACATAGCAAA
ATCGAGCTCGACTATGCCTTGTGCCAATAGATGTTTAAAAAAAGGTCTTC
GCCTTTGGCATAGAAAGTCATTCGTGGATTTGTATTTCAGCTTCGATTCA
TGGTCCGTGGGAATTGATTACTAATCAGTCGATTTGTTATGGTTCTCGCG
ATGACAGCTTTGCAAAATTCAACTTACCAAGAGATGGGTACATTGCAAGT
TTTCGCATGGTTCATATCAGTGGCTATGTTGGATGTCACTACAATAATGG
TGGTTATTGGGGATGTAACAATTATTTCGATGCCAATGCTATCATGACTG
TTATCACTGGTAATTTTTGTTACTTAACTAAAGAGGTTCTTGGGAAAAAA
AGTTAAGAATTAATTTTTGTAGAGGGCTTGTTCCCACTGTCGATTTTTAG
TTATTGATTTTTTAACTATAACGGTGGAATTCCTTGGCGAGTTCACCTCA
GCCACTGAAATCAAGACTTACCTCCAAAAGTTTTTACAACAGAATATACT
AACAAACGATAAATGTGAGGTATATTCTGGTTTATAGAACAATCCCCACC
CACCGGAAATATGAGCCCAAAATCCGTCCCCTGTGGAGGTAAACCCCTCA
AATTTCGTCCCCATTGGAAAAATTGAAGTATCACATATCCCCACTGTAGA
GTTTTAGATGTAAATTTGCAGTCCCCACTGGAATTTTTGTATTGAAAACA
ATAGAAATCAATATCCCAGTCATGAAATAGAAAGGATTTTCTACCCTCAC
TGAAGAATTCTCCCTCGATTTCATCCCCACCATTTTCACTGGGTCAGTGA
GACAGGGGTGTTATAGAGTAGTGAAGAAAAGAGGACCAATAGAATTGTTA
GAAGAGGGGATTAATTATTAAATATGTTGTTTTTAGATGATAGGAAGAAG
TTCATTGAACCGAAAATATACAACAGAGACATAATGGATAAACTGAAATA
TCCTCCTTATCACTCCCTGTCAAAGGTTTGAATTCTTAATCCCTGAATCC
CCAAATCCCCGAATTAAAAACACTAAAGGTCAAAGCAAAGGTTACTTTTA
AGCACGTCGTGCCGCCCCGCCTTCTGTGGTTGTTGTTCCAATAGGACATG
AGCAAGTTTTAAATTTTGGTTCGTATAAGACTGTAAGAATGCAAGGGATA
ATTGAACAACTCAAAAACTTGTTTGCAATTTGTAGATATGTACATTAATG
CCTTTTTGATTTAGGATTTAACTTTTCTAAAACACAAAAAGCCTACATTG
ATTTTTTTCCTAGAACAGACGAACAGTTTTTCCAATATAATTTCGAAGCC
TTTTATGGAATTTGATTAAGGTGAATTTTCGGGGCTATCAGATATTTCTT
TAGGTTACCACAGAACTCGAATTAAAACTTGGAAATAAGTTGAACGACGT
TAACCCTTAGAATACGAATGTCGTAATTTTACGGTTTGAAAAGATCGTTT
AACCTGATACTCCGTCTTTTGGTCATAACTCCTGACCACTCGAGTTTTGA
GGAAAATAACCCAGTTCTATTTTATATAGCTGAGAAAGAGAGCTTTCTAA
CGATATAAAAGTTGATATCCTAGCCTTCTTTTCGGACCCAGAAATAGCCT
TAGAAAAATATCTAAATTTGGAATAAAAACTAATAATTTTTTTGGCTTTT
TCAAACTTTGGTGTGCACGCTAAAGTTTAAGAAATATGGCCGATAGTTCG
TTCCTTAACCCTATTCGTCTTAGGTGGGGGGAGGGTTATTTTCATACCAA
CCGAAAACCTTTAGTAATAGTTCCTGATAATGTTTGCTTTGTCAACGAAA
TCTTGTGATTTTCATATAACATATTGATTTTCAGACCTTGTGCATGATAT
CATTTTTGATAAAGTGTCATGAAAATATGACACATTTTTGCATAATTGCA
CTTTATTGCACTTTAAACCTTTAAGTGTTAAATATATCATTTAAATCGAT
ATTTTATGAATAATTTGAAGAGAAAAGTCATTTTTATCTATTAATCCCAT
TCTCTGCTTAAAATTTTGCTATTTTCAATTTTTTGCGCCAAAAGTGTCAA
TTTTCTATTTCTTCTCGCATCAGCATGATAAGTGATGCCATCAAAGAAAA
TTACTTTGTCAATTTTTTCTATTCATANAAATTTTGCGATTTTCAATTTT
TTGCACCAAAAGTGTCAATTTTCTATTTCTTCTCGCATCAGCATGATAAG
TGATGCCATCAAAGAAAATTATTTTGTCAATTTTTTCTATTCATATAGTA
AGGATCCCGTGTATTAAATTTCATGCAAAATGGACAATTAGATCATAAGT
TAAGGGGTGGATACAAAATTAGCCCCCCCCCCTTGAACCACCCCTAAAAG
ACTTGGCTGAATAGGGTTAATCTCCCAGGATAGGATAGACTAGAGTCTAC
TCTTGCTGAGCTTTTTCAAATTTTGATGACGCTCATTCCAGTAGAGTAGA
TTATGAGGCTTTGTAATTTCGATTTCTCAAGGATTCAAAATGACACATTT
TTCCATTGAGTTAAGTTTTGAAATGCTTCCTTGGGATTCGGTTCATAGCG
TTTAAAGTCAAAACAAGGTAGTAGTTGTCCGCTTTATCATTTGTTAAAAG
GCCTATTGCTTAGGGGTACAAAAGTAAGATCATAAAAATCCAGATATTCT
TTTTTGAATGAATTGCATTTTTCAGAATCTAATCATGAACCTTGGAGAGC
CTTACAAAGTACACAAAGATCAAGAACTACAAGTTTGGTACGGAAATGAC
GTGTTGGATAACTGGGAAGGTAATTGTGTATCTGGTATCAAGCATTGTAT
AGATGTTTTTGTGAGGTACCATTGACTAAATTGGATCAATCAAGTATTTA
CAAAACCTCACTATGCAAGTTCGGATTTTTTAATTTAGTAAAGAAAAACA
CTTAAATTATCCAAACTTATTCACTTATTCACCACGCCGTTAACACAGCA
CCTCTGAAAATTTTGCCACTGCAATATTTAGAATAAGATACAATGAATAC
TAAAGTAATGTTGAAGATGAGCTGTTATATACACGTGAGAGGACCATCAG
TGTATGCATGAATATCCAACATTCAAAGCTTACTATTATCATAGAACTCA
TGCAGAAGGACAAGTAACTTCAAACATTGGAACATCCGCGAATTATTTAG
AGAATGTTTTAATTACCTGATTCATTTTTTATGGAGATTAATTACTCTTC
TAAAATAAGTGAACCTCTCTGCTGTATCCGAGACTGCAATTTTCTTGAGA
CTTTAACAGTTACTAAAGCTGTTTCTTCAAATCATGAAAAAGCACTGCAA
CAGTAGTTGACAAAATGCGCACTGTAAAGCTAAGGGCACAAAATTGGGGA
AAAAGCGAATTTTGGTTGGTGCCTTGTTAGAATGGAAATATGGGGAAAAC
GCAAATAACACCCCTGTGTCACAGACACGGTGGAAAAAATACCCTACATT
TTCAACCCCACTGGGAAATTGCCCTATGATTCTATCCCCATTGAAAATTG
AATGGGAAAAATTGGACTCCAAAACCATCCACACTGGAATTTTTGAGCTG
GAAACAATAGATTTTCTATCCCCATTGGGATTTCGATAGAAATTTTCGGA
AATTTTCATCCCCACTGAGGGAAAAGGTTCCACCGGGGCACTGAGACAGG
GGTGTCAAATAAGTTTTGAAATTTTTCAAAAGCCAATTTTAAAGGTGCAC
GTACACCGCTACTGTATAATAAGACAAAACTAGCGAACGAGCTGACAAGA
TGACAAAGCGACAAATCACCCGTTGTGCACATAGAGGAGTACCAAAAATA
TGAAAAATAGTTATTATAATGTGTTACTTTGATTTATTTTTTGCATACGT
TGAATATAGGCCATATAGTGACCTCCCTGTTTGAAAGCTTGACAAGATGT
TTCTGTGTTATTTTTAAAAGAATTTGTCCGAATATAAATATTCTCAGTTA
AAGTTAATTTTCTGTACTTTTAATAATTAAAATTTGCCATATTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015938-exon-sc0000222-1575043694:414021..414404 | TCONS_00015938-exon-sc0000222-1575043694:414021..414404 | Clytia hemisphaerica | exon |
| TCONS_00015938-exon-sc0000222-1575043694:412996..413214 | TCONS_00015938-exon-sc0000222-1575043694:412996..413214 | Clytia hemisphaerica | exon |
| TCONS_00015938-exon-sc0000222-1575043694:409308..410629 | TCONS_00015938-exon-sc0000222-1575043694:409308..410629 | Clytia hemisphaerica | exon |
| TCONS_00015938-exon-sc0000222-1510915933:414021..414404 | TCONS_00015938-exon-sc0000222-1510915933:414021..414404 | Clytia hemisphaerica | exon |
| TCONS_00015938-exon-sc0000222-1510915933:412996..413214 | TCONS_00015938-exon-sc0000222-1510915933:412996..413214 | Clytia hemisphaerica | exon |
| TCONS_00015938-exon-sc0000222-1510915933:409308..410629 | TCONS_00015938-exon-sc0000222-1510915933:409308..410629 | Clytia hemisphaerica | exon |
| TCONS_00015938-exon-sc0000222-1491911889:414021..414404 | TCONS_00015938-exon-sc0000222-1491911889:414021..414404 | Clytia hemisphaerica | exon |
| TCONS_00015938-exon-sc0000222-1491911889:412996..413214 | TCONS_00015938-exon-sc0000222-1491911889:412996..413214 | Clytia hemisphaerica | exon |
| TCONS_00015938-exon-sc0000222-1491911889:409308..410629 | TCONS_00015938-exon-sc0000222-1491911889:409308..410629 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000222 | supercontig | sc0000222:409308..414404 - |
Blast
The following BLAST results are available for this feature:
|
