TCONS_00015995 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015995
Unique NameTCONS_00015995
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015995 ID=TCONS_00015995|Name=TCONS_00015995|organism=Clytia hemisphaerica|type=transcript|length=409bp
ATGATATTGACGAACGTTCTCGTTCTAATAGCATGTTATGCTTTTTGCAT
GGTTTCGTTTAATGGGTCTGTACAAGGGGCGACGGTGGCAGAAACAGCga
agaaatttgaaaacagcTTTATTGAGTTAGCTAAACCAACACGTCGACGT
GGGCGCGGAAGGCCAGGCTTTTCAATTCCTGCTGACCCCGTCGACCTTAT
CTTTGTCATTGATCGATCTGGAAGTATTGGACAAAGCAATTTTGGTCTTT
CACTTAAATTCGTTGAAGAGGCATTGAACTATTGGAGTGTTTCACCATCA
ACAACCCGAGTGGCAGCAATTTCATATTCACACAGCATCCGAAATGATTT
CCTGTTTAACGCACATGTTAATAGAGAATGTGTGGTGAAAGCCGTCAGGG
AAATAGAGT
Run BLAST on NCBI

protein sequence of TCONS_00015995-protein

>TCONS_00015995-protein ID=TCONS_00015995-protein|Name=TCONS_00015995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MILTNVLVLIACYAFCMVSFNGSVQGATVAETAKKFENSFIELAKPTRRR
GRGRPGFSIPADPVDLIFVIDRSGSIGQSNFGLSLKFVEEALNYWSVSPS
TTRVAAISYSHSIRNDFLFNAHVNRECVVKAVREIE
Run BLAST on NCBI

transcript from alignment at sc0000224:60472..62334-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015995 ID=TCONS_00015995|Name=TCONS_00015995|organism=Clytia hemisphaerica|type=transcript|length=1863bp|location=Sequence derived from alignment at sc0000224:60472..62334- (Clytia hemisphaerica)
ATGATATTGACGAACGTTCTCGTTCTAATAGCATGTTATGCTTTTTGCAT
GGTTTCGTTTAATGGGTCTGGTAAGTTTGCAGTTCAACCCGATCCTATCT
ATTCTCATGACCTCAATGCACCTCTGCCAAAATCCAAAATCGGCTGCTTC
AATCAAATAGTAATCCCTTCAGGATCGTCCATTATTAGGAAAGATAATCA
AATTTTGAGAAAAACGGACTGATTTGATGTGTGTATTGCACTAATAAGTC
GATGAATTTTGTCTAGTTTAAATTTGCCACTACTGGCTAAAACAGGGGTA
TTTCCGTAGAAAACATTACGTCATGAATTTAAAGGTAGTACTCTGGTAGA
AGAAGGGGCTAAAGTTTACAACCGATCATAAGCAATCAAAGTATGAGAAA
TCTGATATTGAGAGTTTGAAATGAACCAGAGAAACAAAAAAGTTTTGGTC
TTAATGAACTAAACATAATTTCTGATTATTTACCTTTTCAGTACAAGGGG
CGACGGTGGCAGAAACAGCGAAGAAATTTGAAAACAGCTTTATTGAGTTA
GCTAAACCAACACGTCGACGTGGGCGCGGAAGGCCAGGCTTTTCAAGTAA
GTGGAAAGGACCTTTTTTTATATAAAAAATTGTTGTGTAATAAAATTTGA
GTTTTCTGAAAACCAACATTTTTTTAGTTATGGAAAATTTTGAAACTGAT
TTATAAGGGTTTGTTACCGGAAGGATATTTATTTTGAACATTATAACTCA
TTGTTTTTAGTTCCTGCTGACCCCGTCGACCTTATCTTTGTCATTGATCG
ATCTGGAAGTATTGGACAAAGCAATTTTGGTCTTTCACTTAAATTCGTTG
AAGAGGTATTAAATTGTTATTAACACTTACTAATTAATATTAATACAATA
TTACCCTAGAAATTATCATGAACTAACTGTGAGGAAGTATTTCTTTCGCT
TGCCCTAAATAAGGACCTCTTTTACGCCGGCCCTTATTACGCCAAAGCTA
GTTTTTTTACATTTTTTAACCCGGACCTGATTTAATTCTGATCACTAACG
ACCACCTTACTGCGCCAGCGACGTAAGAATAGCGTCAATAAAGGCCGGCG
TAAAAAGGGCCGATAAGGTAGTACTTGATATGTTGATGTTATTTAGAGCT
AGGAAACTATGCTAAGCTTTAAGATGTCTCAAGACAAGCAACATTACAAA
TGAATACCCCTACTCTCGGGTACCTAATAGCCGACCCCCCGCTAATTAAC
TTTTATACCCCCCCCCCCCCCGCTTATTAAGTTTTGAGATTTTTTCCACC
CCCCCCCCCCCGCTTATTAAGTTTTGAGATTTTTTCCACCCCCCCCCCCC
CGCTTATTAAGTTTTGAGATTTTTTCCACCCCCCCCCCCCCGCTTATTAA
GTTTTGAGATTTTTTCCACCCCCCCCCCCCCGCTTATTAAGTTTTGAGAT
TTTTTCCACCCCCCCCCCCCCGCTTATTAAGTTTTGAGATTTTTTCCACC
CCCCCCCCCCCGCTTATTAAGTTTTGAGATTTTTTCCACCCCCCCCCCCC
CGCTTATTAAGTTTTGAGATTTTTTCCACCCCCCCCCCCCCGCTTATTAA
GTTTTGAGATTTTTTCCACCCCCCCCCCCCCCCCCCCGCTTATTCCAAAC
CCCCCGGCTATTAGGTACCCGAGAGTAAAAAGATAAATTTTCAAAGTTTG
AGAATAGAACTTTTCTTCATTTAGGCATTGAACTATTGGAGTGTTTCACC
ATCAACAACCCGAGTGGCAGCAATTTCATATTCACACAGCATCCGAAATG
ATTTCCTGTTTAACGCACATGTTAATAGAGAATGTGTGGTGAAAGCCGTC
AGGGAAATAGAGT

Coding sequence (CDS) from alignment at sc0000224:60472..62334-

>TCONS_00015995 ID=TCONS_00015995|Name=TCONS_00015995|organism=Clytia hemisphaerica|type=CDS|length=1632bp|location=Sequence derived from alignment at sc0000224:60472..62334- (Clytia hemisphaerica)
GCATTGAACTATTGGAGTGTTTCACCATCAACAACCCGAGTGGCAGCAAT
TTCATATTCACACAGCATCCGAAATGATTTCCTGTTTAACGCACATGTTA
ATAGAGAATGTGTGGTGAAAGCCGTCAGGGAAATAGAGTTCCTGCTGACC
CCGTCGACCTTATCTTTGTCATTGATCGATCTGGAAGTATTGGACAAAGC
AATTTTGGTCTTTCACTTAAATTCGTTGAAGAGTACAAGGGGCGACGGTG
GCAGAAACAGCGAAGAAATTTGAAAACAGCTTTATTGAGTTAGCTAAACC
AACACGTCGACGTGGGCGCGGAAGGCCAGGCTTTTCAAATGATATTGACG
AACGTTCTCGTTCTAATAGCATGTTATGCTTTTTGCATGGTTTCGTTTAA
TGGGTCTGGCATTGAACTATTGGAGTGTTTCACCATCAACAACCCGAGTG
GCAGCAATTTCATATTCACACAGCATCCGAAATGATTTCCTGTTTAACGC
ACATGTTAATAGAGAATGTGTGGTGAAAGCCGTCAGGGAAATAGAGTTCC
TGCTGACCCCGTCGACCTTATCTTTGTCATTGATCGATCTGGAAGTATTG
GACAAAGCAATTTTGGTCTTTCACTTAAATTCGTTGAAGAGTACAAGGGG
CGACGGTGGCAGAAACAGCGAAGAAATTTGAAAACAGCTTTATTGAGTTA
GCTAAACCAACACGTCGACGTGGGCGCGGAAGGCCAGGCTTTTCAAATGA
TATTGACGAACGTTCTCGTTCTAATAGCATGTTATGCTTTTTGCATGGTT
TCGTTTAATGGGTCTGGCATTGAACTATTGGAGTGTTTCACCATCAACAA
CCCGAGTGGCAGCAATTTCATATTCACACAGCATCCGAAATGATTTCCTG
TTTAACGCACATGTTAATAGAGAATGTGTGGTGAAAGCCGTCAGGGAAAT
AGAGTTCCTGCTGACCCCGTCGACCTTATCTTTGTCATTGATCGATCTGG
AAGTATTGGACAAAGCAATTTTGGTCTTTCACTTAAATTCGTTGAAGAGT
ACAAGGGGCGACGGTGGCAGAAACAGCGAAGAAATTTGAAAACAGCTTTA
TTGAGTTAGCTAAACCAACACGTCGACGTGGGCGCGGAAGGCCAGGCTTT
TCAAATGATATTGACGAACGTTCTCGTTCTAATAGCATGTTATGCTTTTT
GCATGGTTTCGTTTAATGGGTCTGGCATTGAACTATTGGAGTGTTTCACC
ATCAACAACCCGAGTGGCAGCAATTTCATATTCACACAGCATCCGAAATG
ATTTCCTGTTTAACGCACATGTTAATAGAGAATGTGTGGTGAAAGCCGTC
AGGGAAATAGAGTTCCTGCTGACCCCGTCGACCTTATCTTTGTCATTGAT
CGATCTGGAAGTATTGGACAAAGCAATTTTGGTCTTTCACTTAAATTCGT
TGAAGAGTACAAGGGGCGACGGTGGCAGAAACAGCGAAGAAATTTGAAAA
CAGCTTTATTGAGTTAGCTAAACCAACACGTCGACGTGGGCGCGGAAGGC
CAGGCTTTTCAAATGATATTGACGAACGTTCTCGTTCTAATAGCATGTTA
TGCTTTTTGCATGGTTTCGTTTAATGGGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008934XLOC_008934Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015995-exon-sc0000224-1575043694:62265..62334TCONS_00015995-exon-sc0000224-1575043694:62265..62334Clytia hemisphaericaexon
TCONS_00015995-exon-sc0000224-1575043694:61739..61843TCONS_00015995-exon-sc0000224-1575043694:61739..61843Clytia hemisphaericaexon
TCONS_00015995-exon-sc0000224-1575043694:61480..61574TCONS_00015995-exon-sc0000224-1575043694:61480..61574Clytia hemisphaericaexon
TCONS_00015995-exon-sc0000224-1575043694:60472..60610TCONS_00015995-exon-sc0000224-1575043694:60472..60610Clytia hemisphaericaexon
TCONS_00015995-exon-sc0000224-1510915933:62265..62334TCONS_00015995-exon-sc0000224-1510915933:62265..62334Clytia hemisphaericaexon
TCONS_00015995-exon-sc0000224-1510915933:61739..61843TCONS_00015995-exon-sc0000224-1510915933:61739..61843Clytia hemisphaericaexon
TCONS_00015995-exon-sc0000224-1510915933:61480..61574TCONS_00015995-exon-sc0000224-1510915933:61480..61574Clytia hemisphaericaexon
TCONS_00015995-exon-sc0000224-1510915933:60472..60610TCONS_00015995-exon-sc0000224-1510915933:60472..60610Clytia hemisphaericaexon
TCONS_00015995-exon-sc0000224-1491911889:62265..62334TCONS_00015995-exon-sc0000224-1491911889:62265..62334Clytia hemisphaericaexon
TCONS_00015995-exon-sc0000224-1491911889:61739..61843TCONS_00015995-exon-sc0000224-1491911889:61739..61843Clytia hemisphaericaexon
TCONS_00015995-exon-sc0000224-1491911889:61480..61574TCONS_00015995-exon-sc0000224-1491911889:61480..61574Clytia hemisphaericaexon
TCONS_00015995-exon-sc0000224-1491911889:60472..60610TCONS_00015995-exon-sc0000224-1491911889:60472..60610Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015995-proteinTCONS_00015995-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:60472..62334 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.684184	0.854032	0.448446	0.925788	1.9769	0.11814	0	0.735113	1.00727	1.40524	0	1.3649	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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