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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016054 ID=TCONS_00016054|Name=TCONS_00016054|organism=Clytia hemisphaerica|type=transcript|length=2898bpRun BLAST on NCBI protein sequence of TCONS_00016054-protein >TCONS_00016054-protein ID=TCONS_00016054-protein|Name=TCONS_00016054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=635bp MKFNLFQAPIVIVIFTVHSAVFGFESCDIATEKTATLLYDEALLVLDNNSRun BLAST on NCBI transcript from alignment at sc0000225:122601..156930- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016054 ID=TCONS_00016054|Name=TCONS_00016054|organism=Clytia hemisphaerica|type=transcript|length=34330bp|location=Sequence derived from alignment at sc0000225:122601..156930- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000225:122601..156930- >TCONS_00016054 ID=TCONS_00016054|Name=TCONS_00016054|organism=Clytia hemisphaerica|type=CDS|length=34344bp|location=Sequence derived from alignment at sc0000225:122601..156930- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00016054 vs. Swiss-Prot (Human)
Match: HGNAT (Heparan-alpha-glucosaminide N-acetyltransferase OS=Homo sapiens GN=HGSNAT PE=1 SV=2) HSP 1 Score: 349.747 bits (896), Expect = 6.209e-107 Identity = 237/618 (38.35%), Postives = 345/618 (55.83%), Query Frame = 2
Query: 344 DEALLVLDNNS--TKTTVEFNAICSNCYKCLTQPCVN------ATVGSLSYAKISTRFPFRYDVVDVTSKTKICSDTFHFGEHGHYQLVVNDASCSKIEIV------KKPIFTYLPLVVLFSIIL--VLMVSFVLLNLAIQKYNSTRMISYESIPTDDLTEHSFTRSNSSHKSYGSLHNNKQSISVGNNSGKYQNSGKYMGAVTLDNEQEGKSTKRLRSLDTFRGISIVVMIFVNYGGGKYWFFNHSKWNGLTVADLVFPWFIFIMGASIFISCRSMXXXXXXXXXXXXXXXXXXXXLFALGLFI-NNGIKLRSLKWKDYEHWRIPGVLQRFALSYLVVAILN-VWCSPEEETVNTHYHYDWRDSFRDLTWFPLQHFIMXXXXXXXXXXXXXXPVPGCKTGYLGPGGLSDNXXXXXXXXXXXXYIDRKIFGLNHMYNSPTCRHPYKCG-PHDPEGFLGVIPSILMTYFGLMAARMLFMY-SRPKSHIKRWMIWALIMGAIAIGLCGGKKDGGLIPINKNLWSISFICATAAMAFVLLIVCYVTIDVKKWWSGAPFYFAGMNAIMLYCGHEILSGYFPFD--FNNNGQHDELLTQAAVGTGVWLVIAYSCFKSDIFWKV 2131
D+ALL++ N T TV + + C CY CL Q VN A S + A +ST+ + D + ++C + FGE G+Y L+V + EI + P+ + LP+ + F I L ++++SF+ L L++ +N+ + S TD L + + G + +S RLRS+DTFRGI++++M+FVNYGGGKYW+F H+ WNGLTVADLVFPWF+FIMG+SIF+S S+ ++ K + KI RS L +G+ I N L L W + RIPGVLQR ++Y VVA+L ++ P E + S RD+T Q ++L+L ++L LTFLLPVPGC TGYLGPGG+ D G + CTGGAA YIDR + G +H+Y P+ Y +DPEG LG I SI+M + G+ A ++L Y +R K + R+ W I+G I++ L ++ G IP+NKNLWS+S++ ++ AF +L+V Y +DVK W+G PF++ GMN+I++Y GHE+ YFPF +N H E LTQ V T +W++IAY ++ IFWK+
Sbjct: 80 DQALLLIHNELLWTNLTVYWKSEC--CYHCLFQVLVNVPQSPKAGKPSAAAASVSTQHGSILQLNDTLEEKEVCRLEYRFGEFGNYSLLVKNIHNGVSEIACDLAVNEDPVDSNLPVSIAFLIGLAVIIVISFLRLLLSLDDFNNWISKAISSRETDRLINSELGSPSRTDPLDGDVQPATWRLSA--------------------------LPPRLRSVDTFRGIALILMVFVNYGGGKYWYFKHASWNGLTVADLVFPWFVFIMGSSIFLSMTSILQRGCSKFRLLGKIAWRSFLLICIGIIIVNPNYCLGPLSW---DKVRIPGVLQRLGVTYFVVAVLELLFAKPVPEHCASERSC---LSLRDITSSWPQWLLILVLEGLWLGLTFLLPVPGCPTGYLGPGGIGDFGKYPNCTGGAAGYIDRLLLGDDHLYQHPSSAVLYHTEVAYDPEGILGTINSIVMAFLGVQAGKILLYYKARTKDILIRFTAWCCILGLISVALTKVSENEGFIPVNKNLWSLSYVTTLSSFAFFILLVLYPVVDVKGLWTGTPFFYPGMNSILVYVGHEVFENYFPFQWKLKDNQSHKEHLTQNIVATALWVLIAYILYRKKIFWKI 663 The following BLAST results are available for this feature:
BLAST of TCONS_00016054 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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