TCONS_00016112 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016112
Unique NameTCONS_00016112
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016112 ID=TCONS_00016112|Name=TCONS_00016112|organism=Clytia hemisphaerica|type=transcript|length=1354bp
TCAAAGTTAAGTGAATACAAcaataataaaagaaaatgtCTCTCCAGAAA
TGTGTTGCTTTAATTACTGGTGGTGCTCAAGGCTTTGGACGTGCATTCAC
TGAAAGACTATTAAAAGAGGGAGCAAAGGTTGCTATTCTGGATATCAATG
ATAGCAAAGGAAAAGCATTTGAAGCAGAAATGGGAAAGACATACGGCGCT
AATCACATAAAATACTTACATTGTGATGTTACAAATCAGACAGAATTGTT
TGGAAGGTTCGAAGAAGctaaagaaaattttggaagttTAAATCTTGTGT
GTAATAATGCTGGCATCCTTACGTCAAAACCGGAAGACACTAAGAAGGCT
ATTGACATCAATCTGACAGCTGTAATCCAAGGGACATTCAAAGCGATTGA
TTTAATGAGTAAGAAGAACAATGGGGATGGCGGCTTGGTTGTTAACATTG
CCTCAGCtgcagGAATAGCAATAATGAGGGGTGAACCTATTTACACGGCA
ACAAAGCAAGGAGTTGTTGCATTTACACAATCTTTTGAGTTTCTGCCAAC
CTTGGAGGAAGATGGAGTGAGAGTGAACTGTTTATGTCCATTTGTATCAG
ATACTGATATGGCGAGAAATGCattcaaaaacaattacaaTGACAAATAT
GCTAAGTTCTATCAGAAAATGGGGTTTGCTGAAATCGATGATACAGTCAA
TTCATTTATGAGATGTGTCAATGAAAAGAAGATGAATGCCAACTGCATCG
CTATTTATCCGAAGAACATGGTTTTTGATGTCCATTTCCCTGATGCAAGA
CCTTCCTCAAAATTGTAAATGGTTGATTCAAAGGGCTGGTAATCCTTATA
acgattttgaataatttttgattCAGATCTAGCTGTTTTTGTTAtaaaaa
tctccaaattagCCTCAAAAGAACCAAGAAAGgatttaatactttcttta
atTCTTTTAAAAGCCTGTTTGAAAAGCTTTACTAGATTCTTTAGTCAATT
TCAGTTTAATCAGTTTACCCTTTTTGATTTATAATGtaataattttgatt
taactcTTTATCATGCACTTGAATTTTGTagataattatattttattctg
ATAGTTAGTACTTTTCTCCTGGGGGCGGGGTACAATCCTTGCCGAAGGGC
GGGGACGGGGTACAATCCTTGCCGAAGGACAGGGGACGGGGTACAATCCT
TGCCGAAGGGCGGGGGACGGGGTACAATCCTTGCCGAAGGACAGGGGTGT
GATGCTGAGGTTTGGAAAATGATAGGtcattttttggaaagttttgccaa
aattttcccctgaCTGGGACTGAAATCccaaaatttcctcaaaatattCA
AAGT
Run BLAST on NCBI

transcript from alignment at sc0000226:27207..32798-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016112 ID=TCONS_00016112|Name=TCONS_00016112|organism=Clytia hemisphaerica|type=transcript|length=5592bp|location=Sequence derived from alignment at sc0000226:27207..32798- (Clytia hemisphaerica)
TCAAAGTTAAGTGAATACAACAATAATAAAAGAAAATGTCTCTCCAGAAA
TGTGTTGCTTTAATTACTGGTGGTGCTCAAGGCTTTGGACGTGCATTCAC
TGAAAGACTATTAAAAGAGGGAGCAAAGGTACGCACATTATTTACAAACC
TTTGTATTATTCATATTACATATTTTTGAATGAGATGACAGTGTCTGTTG
GTGACAAAAGTATTTTCCACAAATAGGACTGTTCTCAGTACAATTTTTAT
AATTTCAGGACAGGGTTGGTGTCTGATAACTGGATAATCTGATATATTAT
CCTTCACACAAGCTTTTAACTCTTTATCATAGGTTGCTATTCTGGATATC
AATGATAGCAAAGGAAAAGCATTTGAAGCAGAAATGGGAAAGACATACGG
CGCTAATCACATAAAATACTTACATTGTGATGTTACAAATCAGACAGAAT
TGTTTGGTATACAATCAGAATTACATTTTCTCGCACATTCACATAATCAT
ATAATTACTTCCTCCTTGTTAGACAGTAGAACCCATCTTTTTTTTCAAAT
CTGATGTATACTTGACGGGTCAGAACTGTGAGTCTACTTTCAGACTCAAA
AACAAAATAGCTTATTTACTTGCTGGACTGACTTGCCGAAGAAAGAAATT
ATACATTTTATAAATTTTGTTCAGAAAGTGAGTTTGACCACCGGGAAAAG
AAGTGTTTCGATTGGTAGATTTCTACCAACGTATTTTTGGTGGGAAATTT
GAAACTTTCAAATTATCAGCCTTGACCATGCTATTAATTTCGCCAGCAGT
ATATCAATAAGAAATCATAGCATAGATCTCCAGGCTACTTTCCTTCTTTG
CTTTATCTTTCATCTTTAATTTATCAGTCTTTTATTTAAGGGTAGTTTAA
TTTTCCCTTTTCAGAGGCTAATAATATGTAAACCATCAAAATAGCTCACA
TCTCAATTATTTTTCATAATTTTGTAAAGGAAGGTTCGAAGAAGCTAAAG
AAAATTTTGGAAGTTTAAATCTTGTGTGTAATAATGCTGGCATCCTTACG
TCAAAACCGGAAGACACTAAGAAGGCTATTGACATCAATCTGGTAAGATG
ATTACTTATTATGTAGGATAATATACTACAATGGTATCAGCTCTAGATTA
AGGGAATTTTTTGTATCATTCCAGGTATCCTACTANAATCTTAGCTCTTT
CTTTTGAAAACATTGAAAAGATTTTTTGCTAATTGTCTGACATCAATTAA
ATTAAACTCTGTATCATTCAAAGTTAAGTGAATACAACAATAATAAAAGA
AAATGTCTCTCCAGAAATGTGTTGCTTTAATTACTGGTGGTGCTCAAGGC
TTTGGACGTGCATTCACTGAAAGACTATTAAAAGAGGGAGCAAAGGTACG
CACATTATTTACAAACCTTTGTATTATTCATATTACATATTTTTGAATGA
GATGACAGTGTCTGTTGGTGACAAAAGTATTTTCCACAAATAGGACTGTT
CTCAGTACAATTTTTATAATTTCAGGACAGGGTTGGTGTCTGATAACTGG
ATAATCTGATATATTATCCTTCACACAAGCTTTTAACTCTTTATCATAGG
TTGCTATTCTGGATATCAATGATAGCAAAGGAAAAGCATTTGAAGCAGAA
ATGGGAAAGACATACGGCGCTAATCACATAAAATACTTACATTGTGATGT
TACAAATCAGACAGAATTGTTTGGTATACAATCAGAATTACATTTTCTCG
CACATTCACATAATCATATAATTACTTCCTCCTTGTTAGACAGTAGAACC
CATCTTTTTTTTCAAATCTGATGTATACTTGACGGGTCAGAACTGTGAGT
CTACTTTCAGACTCAAAAACAAAATAGCTTATTTACTTGCTGGACTGACT
TGCCGAAGAAAGAAATTATACATTTTATAAATTTTGTTCAGAAAGTGAGT
TTGACCACCGGGAAAAGAAGTGTTTCGATTGGTAGATTTCTACCAACGTA
TTTTTGGTGGGAAATTTGAAACTTTCAAATTATCAGCCTTGACCATGCTA
TTAATTTCGCCAGCAGTATATCAATAAGAAATCATAGCATAGATCTCCAG
GCTACTTTCCTTCTTTGCTTTATCTTTCATCTTTAATTTATCAGTCTTTT
ATTTAAGGGTAGTTTAATTTTCCCTTTTCAGAGGCTAATAATATGTAAAC
CATCAAACTAGCTCACATCTCAATTATTTTTCATAATTTTGTAAAGGAAG
GTTCGAAGAAGCTAAAGAAAATTTTGGAAGTTTAAATCTTGTGTGTAATA
ATGCTGGCATCCTTACGTCAAAACCGGAAGACACTAAGAAGGCTATTGAC
ATCAATCTGGTAAGATGATTACTTATTATGTAGGATAATATACTACAATG
GTATCAGCTCTAGATTAAGGGAATTTTTTGTATCATTCCAGGTATCCTAC
TAAATCTATGATTGTAAAAAATAGTTTTAATAATAAAATAATTAACAATT
AAAAGATAAGAGCATTTATTTTGTTCTAGACAGCTGTAATCCAAGGGACA
TTCAAAGCGATTGATTTAATGAGTAAGAAGAACAATGGGGATGGCGGCTT
GGTTGTTAACATTGCCTCAGCTGCAGGTTTGAAAAATCTGTTGACTTTTT
TTTTTTAGGTTGGTGTTAGCCTTAAAAGCTAAACTGAAAATCAATGGCCA
GGTATTGAAATTTGTGACTTGTGGCTGAGAATTTGAAAAAAGTGTACTGT
AATTAGAATTACACTCTTGTTTTTTTATATTAAATTTAATAAGCAAAAGA
ACTGAACTGGTTTCTAAATGCCGTCATCAAAATAAATTTTTATTAGCAAA
TTATAAGTCTAAAGATTGATCTTCACGTATATAGAACGTCTGGATAGAGA
ATCATATATTTATGACCCTAGGGATTCATTCCAATTATACTTTTTTTTTT
TTACANAATCCTTATAACGATTTTGAATAATTTTTGATTCAGATCTAGCT
GTTTTTGTTATAAAAATCTCCAAATTAGCCTCAAAAGAACCAAGAAAGGA
TTTAATACTTTCTTTAATTCTTTTAAAAGCCTGTTTGAAAAGCTTTACTA
GATTCTTTAGTCAATTTCAGTTTAATCAGTTTACCCTTTNGAAACTTGAA
GTTCTATAATTCATATTTCATTTTTTCTTGTAAACTGTATATCAAATTTA
GCCAAATTTGAAAACATTTTGTAACTGTGACACTAAGTAACTAAGTTCAG
CAATTGATTCTTTCATATTATCGTTATAGGAATAGCAATAATGAGGGGTG
AACCTATTTACACGGCAACAAAGCAAGGAGTTGTTGCATTTACACAATCT
TTTGAGGTTTGTGAACCTCATGTTTCCTTATGTTGTGAATTAAGATTTAA
AACTAAACTGCATTTTTGACAGTGTTATTGAACTGTTTCATGAAGCTTGT
TCCAACTTTTTCTTATAATTGTTCATCAAAACGATGAGAAACCATAAAAT
CCATTGTCAGATTCTTAAAATTTCAATGTATCAATCTAAGCTCGATAAAG
ATTGCTAATCAAAAAGTTTTTCAATTTAGTTAAAAAGCTTTTACACTCGA
AAACCATTTAAGAAAAATCAATTGTTTCAGATTGTTCCATGTTTTTTCAA
TTATTATGTCTTATGTAGTTTCTGCCAACCTTGGAGGAAGATGGAGTGAG
AGTGAACTGTTTATGTCCATTTGTATCAGATACTGATATGGCGAGAAATG
CATTCAAAAACAATTACAATGACAAATATGCTAAGTTCTATCAGAAAATG
GGGTTTGCTGAGTAAGCAGATTTTTTCATAAATATTTTCTTTTTTGCAAA
TTAATGACAATATTTTTATCAAAATACAATAGTGTCCAGCAATAATGTCT
ACCGGACTTGATGTCAACAAGGAACCTCTGTTATATTATAAAAGTTTTAA
AATTCACGTTTATTGGTCATTTATTTATTTATTCTCATAATTAATTGTTA
GAATCGATGATACAGTCAATTCATTTATGAGATGTGTCAATGAAAAGAAG
ATGAATGCCAACTGCATCGCTATTTATCCGAAGAACATGGTTTTTGATGT
CCATTTCCCTGATGCAAGACCTTCCTCAAAATTGTAAATGGTTGATTCAA
AGGGCTGGTAATCCTTATAACGATTTTGAATAATTTTTGATTCAGATCTA
GCTGTTTTTGTTATAAAAATCTCCAAATTAGCCTCAAAAGAACCAAGAAA
GGATTTAATACTTTCTTTAATTCTTTTAAAAGCCTGTTTGAAAAGCTTTA
CTAGATTCTTTAGTCAATTTCAGTTTAATCAGTTTACCCTTTTTGATTTA
TAATGTAATAATTTTGATTTAACTCTTTATCATGCACTTGAATTTTGTAG
ATAATTATATTTTATTCTGATAGTTAGTACTTTTCTCCTGGGGGCGGGGT
ACAATCCTTGCCGAAGGGCGGGGACGGGGTACAATCCTTGCCGAAGGACA
GGGGACGGGGTACAATCCTTGCCGAAGGGCGGGGGACGGGGTACAATCCT
TGCCGAAGGACAGGGGTGTGATGCTGAGGTTTGGAAAATGATAGGTCATT
TTTTGGAAAGTTTTGCCAAAATTTTCCCCTGACTGGGACTGAAATCCCAA
AATTTCCTCAAAATATTCAAAGTCCCCTCAACNAAAACAATTACAATGAC
AAATATGCTAAGTTCTATCAGAAAATGGGGTTTGCTGAGTAAGCAGATTT
TTTCATAAATATTTTCTTTTTTGCAAATTAATGACAATATTTTTATCAAA
ATACAATAGTGTCCAGCAATAATGTCTACCGGACTTGATGTCAACAAGGA
ACCTCTGTTATATTATAAAAGATTTACAATTCATGTTTATTGGTCGTTTA
TTCTCATAATTAATTGTTAGAATCGATGATACAGTCAATTCATTTATGAG
ATGTGTCAATGAAAAGAAGATGAATGCCAACTGCATCGCTATTTATCCGA
AGAACATGGTTTTTGATGTCCATTTCCCTGATGCAAGACCTTCCTCAAAA
TTGTAAATGGTTGATTCAAAGGGCTGGTAATCCTTATAACGATTTTGAAT
AATTTTTGATTCAGATCTAGCTGTTTTTGTTATAAAAATCTCCAAATTAG
CCTCAAAAGAACCAAGAAAGGATTTAATACTTTCTTTAATTCTTTTAAAA
GCCTGTTTGAAAAGCTTTACTAGATTCTTTAGTCAATTTCAGTTTAATCA
GTTTACCCTTTTTGATTTATAATGTAATAATTTTGATTTAACTCTTTATC
ATGCACTTGAATTTTGTAGATAATTATATTTTATTCTGATAGTTAGTACT
TTTCTCCTGGGGGCGGGGTACAATCCTTGCCGAAGGGCGGGGACGGGGTA
CAATCCTTGCCGAAGGACAGGGGACGGGGTACAATCCTTGCCGAAGGGCG
GGGGACGGGGTACAATCCTTGCCGAAGGACAGGGGTGTGATGCTGAGGTT
TGGAAAATGATAGGTCATTTTTTGGAAAGTTTTGCCAAAATTTTCCCCTG
ACTGGGACTGAAATCCCAAAATTTCCTCAAAATATTCAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009007XLOC_009007Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016112-exon-sc0000226-1575043694:32671..32798TCONS_00016112-exon-sc0000226-1575043694:32671..32798Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1575043694:31076..31199TCONS_00016112-exon-sc0000226-1575043694:31076..31199Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1575043694:30440..30552TCONS_00016112-exon-sc0000226-1575043694:30440..30552Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1575043694:30173..30269TCONS_00016112-exon-sc0000226-1575043694:30173..30269Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1575043694:29443..29519TCONS_00016112-exon-sc0000226-1575043694:29443..29519Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1575043694:28988..29130TCONS_00016112-exon-sc0000226-1575043694:28988..29130Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1575043694:27207..27878TCONS_00016112-exon-sc0000226-1575043694:27207..27878Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1510915933:32671..32798TCONS_00016112-exon-sc0000226-1510915933:32671..32798Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1510915933:31076..31199TCONS_00016112-exon-sc0000226-1510915933:31076..31199Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1510915933:30440..30552TCONS_00016112-exon-sc0000226-1510915933:30440..30552Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1510915933:30173..30269TCONS_00016112-exon-sc0000226-1510915933:30173..30269Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1510915933:29443..29519TCONS_00016112-exon-sc0000226-1510915933:29443..29519Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1510915933:28988..29130TCONS_00016112-exon-sc0000226-1510915933:28988..29130Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1510915933:27207..27878TCONS_00016112-exon-sc0000226-1510915933:27207..27878Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1491911889:32671..32798TCONS_00016112-exon-sc0000226-1491911889:32671..32798Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1491911889:31076..31199TCONS_00016112-exon-sc0000226-1491911889:31076..31199Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1491911889:30440..30552TCONS_00016112-exon-sc0000226-1491911889:30440..30552Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1491911889:30173..30269TCONS_00016112-exon-sc0000226-1491911889:30173..30269Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1491911889:29443..29519TCONS_00016112-exon-sc0000226-1491911889:29443..29519Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1491911889:28988..29130TCONS_00016112-exon-sc0000226-1491911889:28988..29130Clytia hemisphaericaexon
TCONS_00016112-exon-sc0000226-1491911889:27207..27878TCONS_00016112-exon-sc0000226-1491911889:27207..27878Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000226supercontigsc0000226:27207..32798 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0225973	0.0440718	0.179101	0.175222	0.426632	0.457534	0.784414	1.22393	0.875946	0.896305	1.07602	0.632086	0.285546	0.24972	0.372113	0.358024	0.508911	0.295583	0.384343	0.175957	0.52436	0.479558	0.181367	0.306223	0.14557	0.064959	0.371824	0.132274	0.601949	0.383307
Blast
[Close]
BLAST of TCONS_00016112 vs. Swiss-Prot (Human)
Match: PGDH (15-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=Homo sapiens GN=HPGD PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.288e-43
Identity = 86/260 (33.08%), Postives = 139/260 (53.46%), Query Frame = 3 
Query:   36 MSLQKCVALITGGAQGFGRAFTERLLKEGAKVAILDINDSKGKAFEAEMGKTYGANHIKYLHCDVTNQTELFGRFEEAKENFGSLNLVCNNAGILTSKPEDTKKAIDINLTAVIQGTFKAIDLMSKKNNGDGGLVVNIASAAGIAIMRGEPIYTATKQGVVAFTQSFEFLPTLEEDGVRVNCLCPFVSDTDMARNAFKN-------NYNDKYAKFYQKMGFAEIDDTVNSFMRCVNEKKMNANCIAIYPKNMVFDVHFPD 794
            M +   VAL+TG AQG GRAF E LL +GAKVA++D N   G   +A + + +      ++ CDV +Q +L   F +  ++FG L+++ NNAG+   K  + +K + INL +VI GT+  +D MSK+N G+GG+++N++S AG+  +  +P+Y A+K G+V FT+S      L   GVR+N +CP   +T +  +  K         Y D      +  G  +     N  +  + +  +N   + I        +HF D
Sbjct:    1 MHVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALDEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSK---GIHFQD 255
The following BLAST results are available for this feature:
BLAST of TCONS_00016112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGDH2.288e-4333.0815-hydroxyprostaglandin dehydrogenase [NAD(+)] OS=... [more]
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