|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016148 ID=TCONS_00016148|Name=TCONS_00016148|organism=Clytia hemisphaerica|type=transcript|length=3596bpRun BLAST on NCBI transcript from alignment at sc0000226:373681..382256- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016148 ID=TCONS_00016148|Name=TCONS_00016148|organism=Clytia hemisphaerica|type=transcript|length=8576bp|location=Sequence derived from alignment at sc0000226:373681..382256- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00016148 vs. Swiss-Prot (Human)
Match: SETD2 (Histone-lysine N-methyltransferase SETD2 OS=Homo sapiens GN=SETD2 PE=1 SV=3) HSP 1 Score: 261.922 bits (668), Expect = 5.062e-71 Identity = 123/268 (45.90%), Postives = 175/268 (65.30%), Query Frame = 2
Query: 11 EIRKGAFIMEYCGEVVDNHEFQKRTQIYHNDGISHFYFMTLKQNEIIDATRKGSKSRFINHSCDPNCETQKWTVNGFLRVGFFAVHHIYPGEELSFDYQFQRYGEEPQECFCGSDNCRGVIGTEQASSIPTYFEKIMADSPSRSDXXXXXFQKSALAEELNDIFGHTWELEDRKQTLELLRLMVKVESTKERIVLMKILQVTTDTDVLNNFIRYKGLTLLWSWMV---DAPETKSKYRIEILKTLKHIPIPNKNELDDSKLEAIVQKW 805
++ F++EYCGEV+D+ EF+ R + Y + H+YFM LK +EIIDAT+KG+ SRF+NHSC+PNCETQKWTVNG LRVGFF + G EL+FDYQFQRYG+E Q+CFCGS NCRG +G E SI K+ + + D ++ EL + + L D+ Q L L RLMV++E+ ++++ ++++Q T L +F+ GL+LLW WM D E+ K + EI+KTL+H+PIP KN L++SK+ I+Q+W
Sbjct: 1569 DLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGENRVSIRAAGGKMKKERSRKKD---------SVDGELEALMENGEGLSDKNQVLSLSRLMVRIETLEQKLTCLELIQNTHSQSCLKSFLERHGLSLLWIWMAELGDGRESNQKLQEEIIKTLEHLPIPTKNMLEESKVLPIIQRW 1827 HSP 2 Score: 136.346 bits (342), Expect = 5.407e-32 Identity = 77/184 (41.85%), Postives = 106/184 (57.61%), Query Frame = 2
Query: 2300 TLPPNWKTATDADGRVYYYHTVTRETSWXXXXXXXXXXXXXXXXXRQKKI-----------SRDSPRIAAADTTHKSGPRTPPSISHSSSKDAEL-QKIRDAFKTKISSVVVNCLNSYQKVDCKQGRIKNIDDFKFLARKLTHGLIMKERQRVGNEEQLTCNDSVKVKVKEYIRNYMKKFGPVY 2815
LPPNWKTA D +G++YYYH +TR+T WDPP+ DD + + + + P+ A ADT+ +EL +K ++ F+ ++S +V CLN Y+K DCK GRI +DFK LARKLTHG++ KE + N E L CN++VK K KEYI+ YM+KFG VY
Sbjct: 2390 VLPPNWKTARDPEGKIYYYHVITRQTQWDPPTWESPGDDASLEHEAEMDLGTPTYDENPMKASKKPKTAEADTS------------------SELAKKSKEVFRKEMSQFIVQCLNPYRKPDCKVGRITTTEDFKHLARKLTHGVMNKELKYCKNPEDLECNENVKHKTKEYIKKYMQKFGAVY 2555 The following BLAST results are available for this feature:
BLAST of TCONS_00016148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.