TCONS_00016208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016208
Unique NameTCONS_00016208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1905

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016208 ID=TCONS_00016208|Name=TCONS_00016208|organism=Clytia hemisphaerica|type=transcript|length=1905bp
AAAAGtattaaatcaaaatataaacagGATCTACATTGGATTCCCTATGA
TTTTCTCTTGCAACTGGTTGGTCACCATATTGTCATTTTTGTATGCCttt
agtttgtttttcttttgttatgtttttttgtgtATACGTGTTTTCATGGA
AATTAAGCTTTATGTAAACCTTTTGGTTTGAACGAGGGGTAATCTTGCTA
TAAAAAGAGATTGTCCGTATATCATTCTAGAATCAGGCTTCGTGCAATAT
AGAGAATCTAACTCAATACTGATTTATTGGTTAATTTGAAAGCTTTGGTA
GATCTCTCAGTGATTTTTGAGAATCTGAAATTTTGTGCAGCATGAAGTAC
GATGAATCAAATCTTCTTTCTTTGTCTTCCAACACAATGGAACTTATTCA
TGCGTTGAGTGATTGTTTCTTTGGGCCAATGACTGCTAATTGTCAATTGA
AGAAAGGTGACCCATCGATCAATACAACAATTTTACCGACAGTTCAGCCG
AAAACCGAGTACGACCCGACATCACACGACATGCATGCGACAAACGAACA
ACTTGTACAACAAATGCACCATCAAACGACGACAAAACCAATTCGAAAGA
AACCAAGGATTTTATTTTCACAATCTCAAGTTATGGAGTTAGAGAAGAAA
TTTAAAGAACAAAAATATCTATCAGCTTCCGAACGTGACCAAATGGCATC
AAAATTAAATCTAACACCAACACAGGTCAAAATTTGGTTCCAAAACAAAA
GGTACAAGTGCAAGAAACAATCACAAGAATCCAGGCGTGGAATCCACCCA
CCTCCCTACGAATGGCCTTCACTCTTCAACCACCAACGTAATGTTCCTGT
CTTAGTACAACCACCATCATGCCCGCCCCATTGCTATCGCCCTTCGCCAC
CATCGGTTAATTTAAACTCGCCTATCCCGAGTGAAAGCTATACCGGTTAT
TTTCCGGAAAGCTACACTGCTCCACATTACAATAACAATGTTTATTCAAC
TTCACCTTATAACCAATGGCCGTGCTACAAGTGATACCatattgaattaa
aaattaCGGTGCTCAGTGGGATCTAATTGGTTGGATCAAGGAGTAAATGA
TGCTTTTTCTTCGTACGATGGTCTAAAAGTTCTAACGGGAAAAATGAAGC
TAGGTACATGTCAAGATGGACGGAAATGATGACCTAAACTGAAAATTGAA
CCTTTTTCTAGAAGCAAGAAagacttatttatttttttactaaaaGCGAC
CTGGCTGTCGCTCTTGCTTTCGAAATAAGAGAAGaacaaaattctttatt
ttgaaaaaacggaGGAATGAAACACgctgtaaatattttttcatatacat
tgtacatattttttgtttttttgttgttgtttttaagaTAGAAAAGATAG
GGTTTTAGGGAAATTATAATTGCTGTAAAATAGTGTGCGGACGAATTTCT
CAGAGGAAAATATTGTGATGGAGACCAAAGATTGACAATTTTTCCGTGGT
CACACAGTAAAAAAGGCTTCTACAGCCTGGTTTCCATACAAAGGTTTATT
ACTTTTGGGTACTTTTAAAGGTCATGATTAAAACAAGGATGCTTTTGTTG
GGATCTATTGTCAATGATCAAGTTTTGACAAGCTTTAGCCTGCTCCTGCA
GCCAGTAGAAAAAATACTTTCACAATCGTCTTTTATGCTGTTTTTGGCTA
TAAAAACAATTTATGGGTCTTTTGATACTAAACATATCTCTGAGAATAAA
CCTCTTGAAATATCATTTTTGGTGAGGACGCATTTTTAACTTATTTTGTT
TTATCGCaatatatattttgaaagagatattttttaaaagaaatcttttt
ttttgtacaGAGTTACTGTTTATTAGGAATATTTTGTTGGAATTGATATT
AAAAA
Run BLAST on NCBI

transcript from alignment at sc0000231:36432..40427-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016208 ID=TCONS_00016208|Name=TCONS_00016208|organism=Clytia hemisphaerica|type=transcript|length=3996bp|location=Sequence derived from alignment at sc0000231:36432..40427- (Clytia hemisphaerica)
AAAAGTATTAAATCAAAATATAAACAGGATCTACATTGGATTCCCTATGA
TTTTCTCTTGCAACTGGTTGGTCACCATATTGTCATTTTTGTATGCCTTT
AGTTTGTTTTTCTTTTGTTATGTTTTTTTGTGTATACGTGTTTTCATGGA
AATTAAGCTTTATGTAAACCTTTTGGTTTGAACGAGGGGTAATCTTGCTA
TAAAAAGAGATTGTCCGTATATCATTCTAGAATCAGGCTTCGTGCAATAT
AGAGAATCTAACTCAATACTGATTTATTGGTTAATTTGAAAGCTTTGGTA
GATCTCTCAGTGATTTTTGAGAATCTGAAATTTTGTGCAGCATGAAGTAC
GATGAATCAAATCTTCTTTCTTTGTCTTCCAACACAATGGAACTTATTCA
TGCGTTGAGTGATTGTTTCTTTGGGCCAATGACTGCTAATTGTCAATTGA
AGAAAGGTAGATTGGTTGACAAAAGATTTTTTTTTTTTTTGGAATTGGTT
CTTAAGTTTTGTTTTATTTGCGTTTTGTTTACAATCGTTTTGAGCTTCGA
AAACTACCATTAGAAAATCAAGGACATACTGCCCAGAAACGCCCTATCTT
TAACAGACTTTGATTAAAAGACACAATGTGCGTAACCAAGTAAAACTCAA
ACATCCCTTTTTGCATCGTTTCTTTTGTAGCGATGGTTTTTCCGAGTGTA
ATATATCCACCTTACTATAAAACGGCAAATATTGGCCATCCATGGATTTA
ATATAGATGGCTTCTCTATATTAAATCCATGGGTTATCTAATAGCTTTAG
AAGTAATAGACTTTATTCATGTCTATTTATGTAATTCAACTTTGATTGAT
TCAGTGTTTAGCTTGCCAAGGGAAATCGAAACTTACTTAGTAAACCAAGA
GTGTTATTGATTTTAACCAAGAATTAGAATAACAGGAAACGAGAAATTTT
GACGTTCCAAAAAAAAAGGAACAACACAAATACTAGGTTACTTGCTGTCT
TATAATTTTCAACAAATTACGAATTTTAAAAATTGTTTATGTTTTTTTCA
AGTTTAGTCAAACTTTAATTATAACTGATTTCAAAGGGTTCATATGAACA
TATCATAAATCGACAGGCATATAATCATAACGAGCGCAAGTCTGATTTGC
AATTGATTTGCAATGCAATCTTTTTCACCATTTAGGCGAAAATTATTACG
TCATCATTCCTTTTAAGATAAAAATCATGGGCTCAAAATCAGACTTACGC
ATATAAATCAACCTTGTGAAAATTTCCCTGTACATTCCCAACATTATTAT
AAAGAATTAGATCTAAAAGTCAAGTTGCCATGAGTAGTGTTTCTTTCGTA
GTAGAAAGACTTTATAGCAGCCCTCCATTACAAGGTTGAAAGTCGATGAA
AATGGATACACTAGAGTGCCCTTCAACATTGTCAAGTTTTGTAAAGAGAA
ATCTTACGACCCTCGACTTGTTTTACATCTAACGTTCTTGTATTCTTCTG
TTTAAATTAAAAAGCCCTTTTTGTTATAAAACACAAAAATAGCATCACAG
TCTTCTAAACCCCCCCCCCCCCAAGGAGCAGTGCATAAACAAAGCTTACG
GACAGTTCTTGCGAAATTGGCCTAAAAAGTGAAATCAAATTCCTACAAAA
TTTTTATGAATGAATAAACAAAGAGTATAGTTTTCTGACAAGTAGAAAAT
TCGTAAAAGTTAAATTCTACAAAAAAATGTTTGCGCAAAAATTTGTTTCC
ATAAGGTTTGTAAATGGTAGGTGGTGCGAACATGACCTAGAGTGAATGCT
GAGTAAAATTGAAAGCATTCCTCTTCGGATAAAATGGGAGTAATCCTGCT
AATACTATAGTGATGAACAATACCCGCTTTATCAATGTAACTATTTTTAG
TGAAAACGCATAATAGGTCGCGATGCGATAATATAAACAAAAGCTGGCGT
TGGATAAACAAGAATTTCTATTCTTCTCAAATACGCCATGACATTGATGC
TTTGAAGGATTTGTTGTTTTTTGTGGTTTGGGAAGGGTACCACTTGTATA
TAAAAGCTAGAAACATGTACCTACTTCATATCACACTTCTACTTCAAAAC
ACAACAAAATTTGTGAGGTACTTTTGACTCTCTCACACTTATAACAAATA
CGATTTTCTAAATTGGTACTCTTTGATACTCACAGGTGACCCATCGATCA
ATACAACAATTTTACCGACAGTTCAGCCGAAAACCGAGTACGACCCGACA
TCACACGACATGCATGCGACAAACGAACAACTTGTACAACAAATGCACCA
TCAAACGACGACAAAACCAATTCGAAAGAAACCAAGGATTTTATTTTCAC
AATCTCAAGTTATGGAGTTAGAGAAGAAATTTAAAGAACAAAAATATCTA
TCAGCTTCCGAACGTGACCAAATGGCATCAAAATTAAATCTAACACCAAC
ACAGGTAAACTATAAATGACTTGCTCTTCTTTCCAATGTGCATGTACATA
TATACGTATATCATTAGCCTTTGCTCATACTCGAGCCAAACCAACAAATT
TAAAGGTCGTGCAAGTTGATCTCGGTAGGAGATTGGTCTTAGCTATATCT
CATGCGACTATATTGTTAAGGACTTCTATCTGGTTATTCAGTTAATTGAT
TCAAACCTATAGTTGCCAAACTTCCAGAATAAATTGAAATGTAACCAAAC
AAATAGTTCAAAATCCTCAATACAATTCGTAATTTATTGTGTGATCGAAA
GATTCCCGAAAAATCTTACAGAAATTTAGATCATTCATTCATTGTGTATT
CATTTTTTCTTTCCAGGTCAAAATTTGGTTCCAAAACAAAAGGTACAAGT
GCAAGAAACAATCACAAGAATCCAGGCGTGGAATCCACCCACCTCCCTAC
GAATGGCCTTCACTCTTCAACCACCAACGTAATGTTCCTGTCTTAGTACA
ACCACCATCATGCCCGCCCCATTGCTATCGCCCTTCGCCACCATCGGTTA
ATTTAAACTCGCCTATCCCGAGTGAAAGCTATACCGGTTATTTTCCGGAA
AGCTACACTGCTCCACATTACAATAACAATGTTTATTCAACTTCACCTTA
TAACCAATGGCCGTGCTACAAGTGATACCATATTGAATTAAAAATTACGG
TGCTCAGTGGGATCTAATTGGTTGGATCAAGGAGTAAATGATGCTTTTTC
TTCGTACGATGGTCTAAAAGTTCTAACGGGAAAAATGAAGCTAGGTACAT
GTCAAGATGGACGGAAATGATGACCTAAACTGAAAATTGAACCTTTTTCT
AGAAGCAAGAAAGACTTATTTATTTTTTTACTAAAAGCGACCTGGCTGTC
GCTCTTGCTTTCGAAATAAGAGAAGAACAAAATTCTTTATTTTGAAAAAA
CGGAGGAATGAAACACGCTGTAAATATTTTTTCATATACATTGTACATAT
TTTTTGTTTTTTTGTTGTTGTTTTTAAGATAGAAAAGATAGGGTTTTAGG
GAAATTATAATTGCTGTAAAATAGTGTGCGGACGAATTTCTCAGAGGAAA
ATATTGTGATGGAGACCAAAGATTGACAATTTTTCCGTGGTCACACAGTA
AAAAAGGCTTCTACAGCCTGGTTTCCATACAAAGGTTTATTACTTTTGGG
TACTTTTAAAGGTCATGATTAAAACAAGGATGCTTTTGTTGGGATCTATT
GTCAATGATCAAGTTTTGACAAGCTTTAGCCTGCTCCTGCAGCCAGTAGA
AAAAATACTTTCACAATCGTCTTTTATGCTGTTTTTGGCTATAAAAACAA
TTTATGGGTCTTTTGATACTAAACATATCTCTGAGAATAAACCTCTTGAA
ATATCATTTTTGGTGAGGACGCATTTTTAACTTATTTTGTTTTATCGCAA
TATATATTTTGAAAGAGATATTTTTTAAAAGAAATCTTTTTTTTTGTACA
GAGTTACTGTTTATTAGGAATATTTTGTTGGAATTGATATTAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009058XLOC_009058Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016208-exon-sc0000231-1575043694:39972..40427TCONS_00016208-exon-sc0000231-1575043694:39972..40427Clytia hemisphaericaexon
TCONS_00016208-exon-sc0000231-1575043694:37974..38242TCONS_00016208-exon-sc0000231-1575043694:37974..38242Clytia hemisphaericaexon
TCONS_00016208-exon-sc0000231-1575043694:36432..37611TCONS_00016208-exon-sc0000231-1575043694:36432..37611Clytia hemisphaericaexon
TCONS_00016208-exon-sc0000231-1510915933:39972..40427TCONS_00016208-exon-sc0000231-1510915933:39972..40427Clytia hemisphaericaexon
TCONS_00016208-exon-sc0000231-1510915933:37974..38242TCONS_00016208-exon-sc0000231-1510915933:37974..38242Clytia hemisphaericaexon
TCONS_00016208-exon-sc0000231-1510915933:36432..37611TCONS_00016208-exon-sc0000231-1510915933:36432..37611Clytia hemisphaericaexon
TCONS_00016208-exon-sc0000231-1491911889:39972..40427TCONS_00016208-exon-sc0000231-1491911889:39972..40427Clytia hemisphaericaexon
TCONS_00016208-exon-sc0000231-1491911889:37974..38242TCONS_00016208-exon-sc0000231-1491911889:37974..38242Clytia hemisphaericaexon
TCONS_00016208-exon-sc0000231-1491911889:36432..37611TCONS_00016208-exon-sc0000231-1491911889:36432..37611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000231supercontigsc0000231:36432..40427 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0407976	0	0	0.413634	0.640183	0	0	0	0	0	0	2.70331	1.20233	2.0392	1.38015	1.40565	1.49214	0.540672	4.02258	0.0988446	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00016208 vs. Swiss-Prot (Human)
Match: NKX26 (Homeobox protein Nkx-2.6 OS=Homo sapiens GN=NKX2-6 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.210e-24
Identity = 63/145 (43.45%), Postives = 84/145 (57.93%), Query Frame = 3 
Query:  594 RKKPRILFSQSQVMELEKKFKEQKYLSASERDQMASKLNLTPTQVKIWFQNKRYKCKKQSQESRRGIHPPPYEWPSLFNHQRNVPVLVQP--PSCPPHCYRPSPPSVNLNSPIPSESYTGYFPESYTAPHYNNNVYSTSPYNQWP 1022
            R+KPR+LFSQ+QV+ LE++FK+Q+YLSA ER+ +AS L LT TQVKIWFQN+RYKCK+Q Q+    +   P     L   +  VPVLV+   P   P    P+ PS    +  P   Y GY    Y A +     Y+ +P    P
Sbjct:  132 RRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHP-----LTPRRVAVPVLVRDGKPCLGPGPGAPAFPSPYSAAVSPYSCYGGYSGAPYGAGY--GTCYAGAPSGPAP 269
The following BLAST results are available for this feature:
BLAST of TCONS_00016208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NKX262.210e-2443.45Homeobox protein Nkx-2.6 OS=Homo sapiens GN=NKX2-6... [more]
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