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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016220 ID=TCONS_00016220|Name=TCONS_00016220|organism=Clytia hemisphaerica|type=transcript|length=1958bp
AAACATACTGAGACACAGTTCGAGACAAGAAGTAGATAGTTGGTGTTTTC
AAGGCTGAATATATGCGAACGATCGTTTAAGGTTGTTGATGGCTTAGATG
TTGATTGTCTATCATTGACAAAGGATATCAATAAGGTTGATGACATTGAA
CTTTCACCAGATACCACATTAACACAAATCGAAAGCGAAGGAGACGACAG
CTCTGAAGAAGGAATAACAAGTGAAGACGAAAGTGATTTTGAagagatga
cgtcatcaggagGTGCTGCTAACAACGACCAACAGTCTCCAAACAAACGA
AAATGTTCTTGGAATTTGGAAgatattgttttgaaattgaaacgATCTAA
GAAACCAAGTAGTTTGCCACAATCTCCACTTCCACCAGAAGATATTAAGC
ACGAAGAGGATGATTACGTATTGTCACCAGTCTTTCCACGAGAAATGAAT
GACTCAGAGAAAAGTTTCTTGAGCGAGAAATCAATCTTTTTAACACAGTT
GGAACAAAAAGATAATATAAGTTTGATGCAAAACATTCGTGAAGAGCGTA
AAATTTTGGACGTGAGTGAGACAAGTAATGATGGTAGCTTGAGTAGCGGA
GCGAGCGCAGATGAACGCGATGANCTGAATGAGACAAGTAATGATGGTAG
CTTGAGTAGCGGAGCGAGCGCAGATGAACGCGATGAACCAGAACAGAAAC
CTGAACGATCAGCTTCTAAGAAAGCTGATGACTTGATTCGAGGTGACTTT
CAACTAGCTAAACTTTTGGAggaagaaaaacttcttggcaGTGAAGGGGA
TAAAATTGATGAAACCAAATGTAATAAATGCAACAAACGGTTTTACAGAC
GCTCACAACTGATCCGTCATCTTTCAAACCACGTGGTTCACGAATGCCTA
CAATGCAGTGCGGTGTTCTATTGTGTTAAGAAATACAAAAAGCACATGAA
TACACATGAGACATACCCGTGTGACTTTTGCAATGAAGAATTTTACGATG
CATCAGCTTGGTACAAGCATAGAGCCAAACACACCATGATGGAGTGCTCA
TGTTGTGATATGATATTCTATAACAAGACAGCATTGGCTAAACATAAATT
TGAACACTCAGAATATATTTGTCCACTTTGTCGTTTCGCCAGTGAGAATC
TTCACCATTGGATTTCACACCGTAATTACCACGGCCGATGCTCACTTCTC
CAACCTATCATCGCTTGTCGAGAATGTAAACTGACTTTTGGATCCCAAGA
AGTTTTTCTGAAGCACAAATGCTCAAAACCACCAAAATCAATCACTTTAA
ATAAACCACTTCAACCCAAAATCTTAACACCTAAAAACTTGCCACCTAAA
ATGTTGACACCAAACATTTTAACTCCTAAAACATCACTTCCACCGTTATC
GAGTACTAAAATACCCAAATCCATACCAATGTCGGTGCACTCTCAACATA
GTCGGATTTCGAAACCTTACGATCGGCGCCCAACCATTCCGCCCACTAAA
TCGTTCTTTAAAGACCATTTATCAAGAGACAAACGATTTATGCCGATGAC
GAAAAACAGTAAAATTTCTAGACCAGAATCGTTTTATTTTCCAAGTCAAA
AGGCACCGGTCAGACATTACTCTTATACGTATCCAAGCAAGCCTTTAAAA
CCTTATAAAAGAGCTGTAATGAACAAGAAAGATATCAAAGACTTGATTGG
TATTGATCAAACCTTAGCTTGCTCATCTTAAAGATAACGACTTCAAggaa
ttcttatttttcttttttaacttttcgaaaatTGTAAATAGCTCTTCAGT
AAATTACTTCATGATCAAAATTCTCTTTCCTTTTCTTATAACGAGTTCTA
TGTAAAGTCATAGTTTTTTGATTGATAAGAACTTGAAGTAAATCAATTGT
CTGTGGCATACACAATTAACTTCTAATTAGGTGATTGCTAATTATCTATG
AGGATAGA Run BLAST on NCBI transcript from alignment at sc0000231:220938..224719- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016220 ID=TCONS_00016220|Name=TCONS_00016220|organism=Clytia hemisphaerica|type=transcript|length=3782bp|location=Sequence derived from alignment at sc0000231:220938..224719- (Clytia hemisphaerica)
AAACATACTGAGACACAGTTCGAGACAAGAAGTAGATAGTTGGTGTTTTC
AAGGNCATTTTTTTGAAAAGAAAGGCTGGGAAAGAAGGAAAGACTCCTCT
CCACTTTTGTTCTTCTGAAAAAGAGATAAAAAGCAGAACAAAACAAAGAA
ATATCAAAGGAAGAATCAGTAAATCTTGGTATGGATAATTTATAAGAAAG
AATAAGAAAGTATAGATATCAAAAAAGAAACATCAAGAGTTTTATCGCAT
CTGTTATCTGCTCCGTTCTTTTCTCTTTGTATACATGACACACAGAATAA
GAATCAAGAAAAAAAAAAGAATTTTAGTGTTTATAATATGGTAGTGTTTG
AAGTTCACCGTAATTCACTCAAAGTTTACCGTTAATTCTTTTGAAGTTGA
CCGCTTTTATCGCTATTCAACTCAAAGCCCCTATCAAGATGATTTTTTTT
TTTCAAAGTCGCGCGCGCATGACAACAGGGATTTTCACTTTTCTTTTATT
TCTATATACTCCAAGAGAGAAAATAGAAAGGGGAAAGCTTTTTAAACATA
CTGAGACACAGTTCGAGACAAGAAGTAGATAGTTGGTGTTTTCAAGGCTG
AATATATGCGAACGATCGTTTAAGGTAAAGGTTTTCTGTCCTTTTTGTTT
TTGTTGTAGCGCGTTTTTCATAAAGCCGGGATTTTAGAATTGGGATAACG
TGAAATTAAAAGTAGTCTTACATAAACTATCAATCAATCAATAAAATACC
TACTCTTCGCACCATTGAGTTTGGTAAAAGAAGAGACCGCCCGGTAGATT
CCTTTGATGCCGGCAATTCACTTACATTTTTAAATATCAAGTTCTTTATA
GTTTGAATATTCAAGTAGTAGTGCAATGTTAACTCTCTCTCTTTTTTTAT
TGTTGACATTTTTCATGCGGGGCGACTTGGAGAATTATCAGGGTAGGCGG
TGTTTTTCTTGATTCTTTTACAAGTAAGTTGAGATTAACTGTAATTAGAT
GGAACTTCCTATTTTCGCTTCTCTATCTAACCAAGTCTTTTATGTAAAAC
AAAAATTCCGACCATTTTTTTTTGTTTTTACTTTTTTTCTTTTAATTCTT
TTCTTTAAAACTTTGTCTTGTTACTTTACACACAGGTTGTTGATGGCTTA
GATGTTGATTGTCTATCATTGACAAAGGATATCAATAAGGTTGATGACAT
TGAACTTTCACCAGATACCACATTAACACAAATCGAAAGCGAAGGAGACG
ACAGCTCTGAAGAAGGAATAACAAGTGAAGACGAAAGTGATTTTGAAGAG
ATGACGTCATCAGGAGGTGTTGCTTATAACAACGACCAACAGTCTCCAAA
CAAACGAAAATGTTCTTGGAATTTGGAAGATATTGTTTTGAAATTGAAAC
GATCTAAGAAACCAAGTANGCTTTTTGTTTTTGTTGTAGCGCGTTTTTCA
TAAAGCCGGGATTTTAGAATTGGGATAACGTGAAATTAAAAGCAGTCTTA
CATAAACTATCAATCAATCAATAAAATGCCTACTCTTCGCACCATTGAGT
TTGGTAAAAGAAGAGACCGCCCGGTAGATTCCTTTGATGCCGGCAATTCA
CTTACATTTTTAAACATCAAGTTCTTTATAGTTTGAATATAGTGCAATGT
TAACTCTCTCTCTTTTTTTATTGTTGACATTTTTCATGCGGGGCGACTTG
GAGAATTATCAGGGTAGGCGGTGTTTTTCTTGATTCTTTTACAAGTAAGT
TGAGATTAACTGTAATTAGATGGAACTTCCTATTTTCGCTTCTCTATCTA
ACCAAGTCTTTTATGTAAAACAAAAATTCCGACATTTTTTTTTGTTTTTA
CTTTTTTTCTTTTAATTCTTTTCTTTAAAACTTTGTCTTGTTACTTTACA
CACAGGTTGTTGATGGCTTAGATGTTGATTGTCTATCATTGACAAAGGAT
ATCAATAAGGTTGATGACATTGAACTTTCACCAGATACCACATTAACACA
AATCGAAAGCGAAGGAGACGACAGCTCTGAAGAAGGAATAACAAGTGAAG
ACGAAAGTGATTTTGAAGAGATGACGTCATCAGGAGGTGCTGCTAACAAC
GACCAACAGTCTCCAAACAAACGAAAATGTTCTTGGAATTTGGAAGATAT
TGTTTTGAAATTGAAACGATCTAAGAAACCAAGTAGTTTGCCACAATCTC
CACTTCCACCAGAAGATATTAAGCACGAAGAGGATGATTACGTATTGTCA
CCAGTCTTTCCACGAGAAATGAATGACTCAGAGAAAAGTTTCTTGAGCGA
GAAATCAATCTTTTTAACACAGTTGGAACAAAAAGATAATATAAGTTTGA
TGCAAAACATTCGTGAAGAGCGTAAAATTTTGGACGTGAGTGAGACAAGT
AATGATGGTAGCTTGAGTAGCGGAGCGAGCGCAGATGAACGCGATGANCT
GAATGAGACAAGTAATGATGGTAGCTTGAGTAGCGGAGCGAGCGCAGATG
AACGCGATGAACCAGAACAGAAACCTGAACGATCAGCTTCTAAGAAAGCT
GATGACTTGATTCGAGGTGACTTTCAACTAGCTAAACTTTTGGAGGAAGA
AAAACTTCTTGGCAGTGAAGGGGATAAAATTGATGAAACCAAATGTAATA
AATGCAACAAACGGTTTTACAGACGCTCACAACTGATCCGTCATCTTTCA
AACCACGTGGTTCACGAATGCCTACAATGCAGTGCGGTGTTCTATTGTGT
TAAGAAATACAAAAAGCACATGAATACACATGAGACATACCCGTGTGACT
TTTGCAATGAAGAATTTTACGATGCATCAGCTTGGTACAAGCATAGAGCC
AAACACACCATGATGGAGTGCTCATGTTGTGATATGATATTCTATAACAA
GACAGCATTGGCTAAACATAAATTTGAACACTCAGAATATATTTGTCCAC
TTTGTCGTTTCGCCAGTGAGAATCTTCACCATTGGATTTCACACCGTAAT
TACCACGGCCGATGCTCACTTCTCCAACCTATCATCGCTTGTCGAGAATG
TAAACTGACTTTTGGATCCCAAGAAGTTTTTCTGAAGCACAAATGCTCAA
AACCACCAAAATCAATCACTTTAAATAAACCACTTCAACCCAAAATCTTA
ACACCTAAAAACTTGCCACCTAAAATGTTGACACCAAACATTTTAACTCC
TAAAACATCACTTCCACCGTTATCGAGTACTAAAATACCCAAATCCATAC
CAATGTCGGTGCACTCTCAACATAGTCGGATTTCGAAACCTTACGATCGG
CGCCCAACCATTCCGCCCACTAAATCGTTCTTTAAAGACCATTTATCAAG
AGACAAACGATTTATGCCGATGACGAAAAACAGTAAAATTTCTAGACCAG
AATCGTTTTATTTTCCAAGTCAAAAGGCACCGGTCAGACATTACTCTTAT
ACGTATCCAAGCAAGCCTTTAAAACCTTATAAAAGAGCTGTAATGAACAA
GAAAGATATCAAAGACTTGATTGGTATTGATCAAACCTTAGCTTGCTCAT
CTTAAAGATAACGACTTCAAGGAATTCTTATTTTTCTTTTTTAACTTTTC
GAAAATTGTAAATAGCTCTTCAGTAAATTACTTCATGATCAAAATTCTCT
TTCCTTTTCTTATAACGAGTTCTATGTAAAGTCATAGTTTTTTGATTGAT
AAGAACTTGAAGTAAATCAATTGTCTGTGGCATACACAATTAACTTCTAA
TTAGGTGATTGCTAATTATCTATGAGGATAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016220-exon-sc0000231-1575043694:224667..224719 | TCONS_00016220-exon-sc0000231-1575043694:224667..224719 | Clytia hemisphaerica | exon |
| TCONS_00016220-exon-sc0000231-1575043694:224096..224123 | TCONS_00016220-exon-sc0000231-1575043694:224096..224123 | Clytia hemisphaerica | exon |
| TCONS_00016220-exon-sc0000231-1575043694:220938..222814 | TCONS_00016220-exon-sc0000231-1575043694:220938..222814 | Clytia hemisphaerica | exon |
| TCONS_00016220-exon-sc0000231-1510915933:224667..224719 | TCONS_00016220-exon-sc0000231-1510915933:224667..224719 | Clytia hemisphaerica | exon |
| TCONS_00016220-exon-sc0000231-1510915933:224096..224123 | TCONS_00016220-exon-sc0000231-1510915933:224096..224123 | Clytia hemisphaerica | exon |
| TCONS_00016220-exon-sc0000231-1510915933:220938..222814 | TCONS_00016220-exon-sc0000231-1510915933:220938..222814 | Clytia hemisphaerica | exon |
| TCONS_00016220-exon-sc0000231-1491911889:224667..224719 | TCONS_00016220-exon-sc0000231-1491911889:224667..224719 | Clytia hemisphaerica | exon |
| TCONS_00016220-exon-sc0000231-1491911889:224096..224123 | TCONS_00016220-exon-sc0000231-1491911889:224096..224123 | Clytia hemisphaerica | exon |
| TCONS_00016220-exon-sc0000231-1491911889:220938..222814 | TCONS_00016220-exon-sc0000231-1491911889:220938..222814 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000231 | supercontig | sc0000231:220938..224719 - |
Blast
The following BLAST results are available for this feature:
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