TCONS_00016240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016240
Unique NameTCONS_00016240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length772

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016240 ID=TCONS_00016240|Name=TCONS_00016240|organism=Clytia hemisphaerica|type=transcript|length=772bp
NNTCAAATAAAATACAACTGAATTTTTGTGACGAAGCGTGTAGCGTAAAA
CCCCCAGTGGCTGTTTATTCTGGAGGAAACATTATCTCCGAACCAATGGC
GTCCGTCACCCCGACCTTCGGAGGTTAAAGGTCTTCCCCCCTTTATGTAC
AAATTGTTGACCGTCAAATGTAAGAGAtcataaatttaaattataattat
tataaaggatttttacgaGGTATGAGCTTCATAGCTtcaaaatgttatca
atctaTTTGTAATTTTCGTTTAAGGAATACCAAATTCATCAACTTGATAA
AACACATCCCCGATTCCATGTTTGATAAGTTGTCGGTGGTGAATGTTGAT
AAGATCGTCAATCCCCAATGACCGGCGTTTGTTTTGGTAATCGATCGTCT
TTTAGTATATTCTATTGTAGTCCTTGGTGGTTGATCGTCTGAGCCATTGA
TTGATCATCTGTTTGAAGTCCAGGAAGAAGCGCTCGTTCGATGTTCCAAT
GtcataaaagtaaagaaagGTTGACCGGAGTATACAGGGGCTTATGGTTA
AATATAGTACgagaaaatctggaaatttcgGAGAAGTTTGCTAAAGTATG
TTAAAATGTGATTTGAGTGAATGCAATAGCGAGGATGATTTAgaattttg
aattgtatttaaAGACGTACGAATCATAATTATCACTTAATGATGCGCAT
GCATAATTAATTTTCCGTGCGAAATTGTTGAGAAcctgcttttccagctt
ttttcaaTCGCTGGAAACATNN
Run BLAST on NCBI

transcript from alignment at sc0000231:110943..111714

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016240 ID=TCONS_00016240|Name=TCONS_00016240|organism=Clytia hemisphaerica|type=transcript|length=772bp|location=Sequence derived from alignment at sc0000231:110943..111714 (Clytia hemisphaerica)
NNATGTTTCCAGCGAttgaaaaaagctggaaaagcaggTTCTCAACAATT
TCGCACGGAAAATTAATTATGCATGCGCATCATTAAGTGATAATTATGAT
TCGTACGTCTttaaatacaattcaaaattcTAAATCATCCTCGCTATTGC
ATTCACTCAAATCACATTTTAACATACTTTAGCAAACTTCTCcgaaattt
ccagattttctcGTACTATATTTAACCATAAGCCCCTGTATACTCCGGTC
AACctttctttacttttatgaCATTGGAACATCGAACGAGCGCTTCTTCC
TGGACTTCAAACAGATGATCAATCAATGGCTCAGACGATCAACCACCAAG
GACTACAATAGAATATACTAAAAGACGATCGATTACCAAAACAAACGCCG
GTCATTGGGGATTGACGATCTTATCAACATTCACCACCGACAACTTATCA
AACATGGAATCGGGGATGTGTTTTATCAAGTTGATGAATTTGGTATTCCT
TAAACGAAAATTACAAAtagattgataacattttgaAGCTATGAAGCTCA
TACCtcgtaaaaatcctttataataattataatttaaatttatgaTCTCT
TACATTTGACGGTCAACAATTTGTACATAAAGGGGGGAAGACCTTTAACC
TCCGAAGGTCGGGGTGACGGACGCCATTGGTTCGGAGATAATGTTTCCTC
CAGAATAAACAGCCACTGGGGGTTTTACGCTACACGCTTCGTCACAAAAA
TTCAGTTGTATTTTATTTGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009070XLOC_009070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016240-exon-sc0000231-1491911889:110943..111714TCONS_00016240-exon-sc0000231-1491911889:110943..111714Clytia hemisphaericaexon
TCONS_00016240-exon-sc0000231-1510915933:110943..111714TCONS_00016240-exon-sc0000231-1510915933:110943..111714Clytia hemisphaericaexon
TCONS_00016240-exon-sc0000231-1575043694:110943..111714TCONS_00016240-exon-sc0000231-1575043694:110943..111714Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000231supercontigsc0000231:110943..111714 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
31.3627	35.7816	16.6724	8.94855	6.48149	3.0238	9.09845	9.62143	15.1721	9.65381	13.0398	9.21589	18.6815	24.7756	17.7615	17.6475	11.1371	9.28748	35.1488	19.976	14.1629	10.8053	26.6543	29.414	3.19933	22.8637	26.0946	18.5839	21.8961	18.1709
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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