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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016248 ID=TCONS_00016248|Name=TCONS_00016248|organism=Clytia hemisphaerica|type=transcript|length=1365bp
ccactggggctgtgagacaggggtgtatttttgCGGAAGTTTAAAACCAC
AAAGATTGGTAAAACTACAAAATAAGGGCCAtaaatatatttataaataa
ttattcaaaatgTCTTAGAAAATTCTgcacattaaaaaatatatgcaaaC
TAAGATTCTCTTTTAACAGTAGACATTGATTTAACTATACCCTCCAATGC
AGTATTCCTGATTGGTACATCTAGCGCCACAGTACACTGTTGACATTTCT
TGAAGCGTTGTTGACATTTGGTACAAAGCAAATGACCATTGCTACATTGA
TAAATGATGACACCTGTTGAGAATTCATCCATACAATATGGACACTCCAA
CTGTGTTCCAAACACAGTAGAAGTACTATCAATAAACTTGTTAAGTTCTT
TACGTTTTGATGtgacacttttcaaaaaatcactttGTTTTTCTTCCAAT
GTTGCAACTCTTTCATACGCTTTACGTAAAGCTGTATCGTTTGTCctcat
tttcttttcaatttgttgtatatcatttttcaatttatctAAAGGTTGGG
TCTGTGCATTGCAAAGTTTTCGTTTAACTGTTTCCTTAATTGATGTTGAC
TTTTGCTGTTGGGCCATCGTAGTTTGCAACATTACGCGAACAGCGGGTTC
AAGTTTGTCATCAGCAACTGCTATACAAACGGCAGTATCACCAAACGTAT
TCTTTGCACTAGTATTTATGCCACATTTTAATAGAAAATGTACCAACTCA
AACGAAGCATGGGAATGGATGGCCTCATGGAGGACTGTGTTTTCAGACAA
ACACATTAGACGGGGATTAGCTCCGTTATAAATAAGAAGTTTCACAAATT
TGAGACCATTCCTACAAGCTAGATGTAATAATGGTAcgccacaaaaatct
ttaacATCCAAAAAAGCCCCTTTTTCTATCAGTAATTCCATTATATCATA
GTTTTTGTTCTTGCATGCCAAGATAATTGGATTGATGTCTATTTCATTTA
AAGTTTCATAATTCACACCTTCATTAATCATACCTTCAATATTAACTAGT
TCTTTTATCACACTCTCTGAGCAGTTttgttttatggcaaaactcaACGG
TGATAATTTGAATTCCTCCACAAACAAATCcttattttcaatgtttttca
aaatgtttttaagtTTGACGACATCATTTTGTTCTAGTGCTTTCTTGGTT
TCAGTGAAAACTGAACTATTTTTGTTTCTACTCATTCTTATAATCTAAAT
TCTAAAAGGAAGAggaacaagctagatgctgaatggacctacctgatgat
gaaagttagatagcaatgcgaggagaaaaaaatcagtcagaaaatatatc
gtttagcgaaaatgc Run BLAST on NCBI protein sequence of TCONS_00016248-protein >TCONS_00016248-protein ID=TCONS_00016248-protein|Name=TCONS_00016248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
MSRNKNSSVFTETKKALEQNDVVKLKNILKNIENKDLFVEEFKLSPLSFA
IKQNCSESVIKELVNIEGMINEGVNYETLNEIDINPIILACKNKNYDIME
LLIEKGAFLDVKDFCGVPLLHLACRNGLKFVKLLIYNGANPRLMCLSENT
VLHEAIHSHASFELVHFLLKCGINTSAKNTFGDTAVCIAVADDKLEPAVR
VMLQTTMAQQQKSTSIKETVKRKLCNAQTQPLDKLKNDIQQIEKKMRTND
TALRKAYERVATLEEKQSDFLKSVTSKRKELNKFIDSTSTVFGTQLECPY
CMDEFSTGVIIYQCSNGHLLCTKCQQRFKKCQQCTVALDVPIRNTALEGI
VKSMSTVKRES Run BLAST on NCBI transcript from alignment at sc0000231:249107..250471 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016248 ID=TCONS_00016248|Name=TCONS_00016248|organism=Clytia hemisphaerica|type=transcript|length=1365bp|location=Sequence derived from alignment at sc0000231:249107..250471 (Clytia hemisphaerica)
gcattttcgctaaacgatatattttctgactgatttttttctcctcgcat
tgctatctaactttcatcatcaggtaggtccattcagcatctagcttgtt
ccTCTTCCTTTTAGAATTTAGATTATAAGAATGAGTAGAAACAAAAATAG
TTCAGTTTTCACTGAAACCAAGAAAGCACTAGAACAAAATGATGTCGTCA
AacttaaaaacattttgaaaaacattgaaaataagGATTTGTTTGTGGAG
GAATTCAAATTATCACCGTtgagttttgccataaaacaaAACTGCTCAGA
GAGTGTGATAAAAGAACTAGTTAATATTGAAGGTATGATTAATGAAGGTG
TGAATTATGAAACTTTAAATGAAATAGACATCAATCCAATTATCTTGGCA
TGCAAGAACAAAAACTATGATATAATGGAATTACTGATAGAAAAAGGGGC
TTTTTTGGATgttaaagatttttgtggcgTACCATTATTACATCTAGCTT
GTAGGAATGGTCTCAAATTTGTGAAACTTCTTATTTATAACGGAGCTAAT
CCCCGTCTAATGTGTTTGTCTGAAAACACAGTCCTCCATGAGGCCATCCA
TTCCCATGCTTCGTTTGAGTTGGTACATTTTCTATTAAAATGTGGCATAA
ATACTAGTGCAAAGAATACGTTTGGTGATACTGCCGTTTGTATAGCAGTT
GCTGATGACAAACTTGAACCCGCTGTTCGCGTAATGTTGCAAACTACGAT
GGCCCAACAGCAAAAGTCAACATCAATTAAGGAAACAGTTAAACGAAAAC
TTTGCAATGCACAGACCCAACCTTTagataaattgaaaaatgatatacaa
caaattgaaaagaaaatgagGACAAACGATACAGCTTTACGTAAAGCGTA
TGAAAGAGTTGCAACATTGGAAGAAAAACaaagtgattttttgaaaagtg
tcaCATCAAAACGTAAAGAACTTAACAAGTTTATTGATAGTACTTCTACT
GTGTTTGGAACACAGTTGGAGTGTCCATATTGTATGGATGAATTCTCAAC
AGGTGTCATCATTTATCAATGTAGCAATGGTCATTTGCTTTGTACCAAAT
GTCAACAACGCTTCAAGAAATGTCAACAGTGTACTGTGGCGCTAGATGTA
CCAATCAGGAATACTGCATTGGAGGGTATAGTTAAATCAATGTCTACTGT
TAAAAGAGAATCTTAGtttgcatatattttttaatgtgcAGAATTTTCTA
AGAcattttgaataattatttataaatatatttaTGGCCCTTATTTTGTA
GTTTTACCAATCTTTGTGGTTTTAAACTTCCGcaaaaatacacccctgtc
tcacagccccagtgg Coding sequence (CDS) from alignment at sc0000231:249107..250471 >TCONS_00016248 ID=TCONS_00016248|Name=TCONS_00016248|organism=Clytia hemisphaerica|type=CDS|length=1086bp|location=Sequence derived from alignment at sc0000231:249107..250471 (Clytia hemisphaerica)
ATGAGTAGAAACAAAAATAGTTCAGTTTTCACTGAAACCAAGAAAGCACT
AGAACAAAATGATGTCGTCAAacttaaaaacattttgaaaaacattgaaa
ataagGATTTGTTTGTGGAGGAATTCAAATTATCACCGTtgagttttgcc
ataaaacaaAACTGCTCAGAGAGTGTGATAAAAGAACTAGTTAATATTGA
AGGTATGATTAATGAAGGTGTGAATTATGAAACTTTAAATGAAATAGACA
TCAATCCAATTATCTTGGCATGCAAGAACAAAAACTATGATATAATGGAA
TTACTGATAGAAAAAGGGGCTTTTTTGGATgttaaagatttttgtggcgT
ACCATTATTACATCTAGCTTGTAGGAATGGTCTCAAATTTGTGAAACTTC
TTATTTATAACGGAGCTAATCCCCGTCTAATGTGTTTGTCTGAAAACACA
GTCCTCCATGAGGCCATCCATTCCCATGCTTCGTTTGAGTTGGTACATTT
TCTATTAAAATGTGGCATAAATACTAGTGCAAAGAATACGTTTGGTGATA
CTGCCGTTTGTATAGCAGTTGCTGATGACAAACTTGAACCCGCTGTTCGC
GTAATGTTGCAAACTACGATGGCCCAACAGCAAAAGTCAACATCAATTAA
GGAAACAGTTAAACGAAAACTTTGCAATGCACAGACCCAACCTTTagata
aattgaaaaatgatatacaacaaattgaaaagaaaatgagGACAAACGAT
ACAGCTTTACGTAAAGCGTATGAAAGAGTTGCAACATTGGAAGAAAAACa
aagtgattttttgaaaagtgtcaCATCAAAACGTAAAGAACTTAACAAGT
TTATTGATAGTACTTCTACTGTGTTTGGAACACAGTTGGAGTGTCCATAT
TGTATGGATGAATTCTCAACAGGTGTCATCATTTATCAATGTAGCAATGG
TCATTTGCTTTGTACCAAATGTCAACAACGCTTCAAGAAATGTCAACAGT
GTACTGTGGCGCTAGATGTACCAATCAGGAATACTGCATTGGAGGGTATA
GTTAAATCAATGTCTACTGTTAAAAGAGAATCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016248-exon-sc0000231-1491911889:249107..250471 | TCONS_00016248-exon-sc0000231-1491911889:249107..250471 | Clytia hemisphaerica | exon |
| TCONS_00016248-exon-sc0000231-1510915933:249107..250471 | TCONS_00016248-exon-sc0000231-1510915933:249107..250471 | Clytia hemisphaerica | exon |
| TCONS_00016248-exon-sc0000231-1575043694:249107..250471 | TCONS_00016248-exon-sc0000231-1575043694:249107..250471 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000231 | supercontig | sc0000231:249107..250471 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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