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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016314 ID=TCONS_00016314|Name=TCONS_00016314|organism=Clytia hemisphaerica|type=transcript|length=1890bpRun BLAST on NCBI protein sequence of TCONS_00016314-protein >TCONS_00016314-protein ID=TCONS_00016314-protein|Name=TCONS_00016314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp MTGLNLNKIYTPRKEALQNPIYKVMEKEEYEMTEKERIEEGQRRLQMPDLRun BLAST on NCBI transcript from alignment at sc0000232:249725..303750- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016314 ID=TCONS_00016314|Name=TCONS_00016314|organism=Clytia hemisphaerica|type=transcript|length=54026bp|location=Sequence derived from alignment at sc0000232:249725..303750- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000232:249725..303750- >TCONS_00016314 ID=TCONS_00016314|Name=TCONS_00016314|organism=Clytia hemisphaerica|type=CDS|length=5775bp|location=Sequence derived from alignment at sc0000232:249725..303750- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00016314 vs. Swiss-Prot (Human)
Match: RT22 (28S ribosomal protein S22, mitochondrial OS=Homo sapiens GN=MRPS22 PE=1 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.012e-53 Identity = 113/301 (37.54%), Postives = 182/301 (60.47%), Query Frame = 1
Query: 199 IQLRSCSSITGSVPEDVLNSKADEFSGKSIQ--ILHDPEVKTLLERMTGLNLNKIYTPRKEALQNPIYKVMXXXXXXXXXXXXXXXGQRRLQMPDLMTRRKPINFVHSQDEQLINHDEDGSDFVFTDISASKNIRSRSIFVRENDTGVLREASWEERDRMQFMYWPKEGQHHEIVEMLQDQHLPRVFDQLRHVDVLDFINIQCEPDSPDFIRVHERVYEDLDQRQEYDILHSTRHFGGMVHHYVSKDKTTKFFSYLVRNGRTEDAMDLLNLYKIINPDSEFSIESKELGDE--DLLKYYVQ 1089
+Q CS G +P +S+A E + D EV+++L +MTGLNL K + P + L+ P YK+M + + E ++ +E + RL+MP ++ R PIN V ++D+ I + + +VFTDIS S R R I VRE +G LR+ASWEERDRM +Y+PKEG+ + ++++L ++ Q RHVDVL+ Q EPDS ++I+VH + YED+D+R +YD+L STR+FGGMV ++V+ K ++ +DA +L+ LY +++PD + + +K+ E +L+K + +
Sbjct: 37 LQPLPCSFEMG-LPRRRFSSEAAESGSPETKKPTFMDEEVQSILTKMTGLNLQKTFKPAIQELKPPTYKLMTQAQLEEATRQAVEAAKVRLKMPPVLEERVPINDVLAEDK--ILEGTETTKYVFTDISYSIPHRERFIVVRE-PSGTLRKASWEERDRMIQVYFPKEGRKILTPIIFKEENLRTMYSQDRHVDVLNLCFAQFEPDSTEYIKVHHKTYEDIDKRGKYDLLRSTRYFGGMVWYFVNNKKIDGLLIDQIQRDLIDDATNLVQLYHVLHPDGQSAQGAKDQAAEGINLIKVFAK 333 The following BLAST results are available for this feature:
BLAST of TCONS_00016314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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