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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016340 ID=TCONS_00016340|Name=TCONS_00016340|organism=Clytia hemisphaerica|type=transcript|length=2265bp
CTCAACAAAGATCTCTGCTTTTCGAAATGTATAGGCACCTTTCATCTCAA
ACATGTCGCTTTGCTCCAATCCACAAGGGTTCTTATATGCATTTAATGAT
TATTCGTTATGTACATGAATTTAGCAGTACAATAGATTTTgatcttttca
actttttggaTATTTTAAGATATGAAGCAAACACACTCTGCACCCTGTAT
CCTTGTGAAGGAGTTTTGCTCAACATAAGTATTCATTGTTAATTTAATTT
ATCTCATTCGAATAGCTTGGAAGTGCCTTCCCATTAaatcactttttctt
tttctatgaaaatatttttgaaaaactattaAATGATACCAtatataaaa
atacaatttgAAAAACTAACCTACATATAAACTCTCGCTACCTTTTCGCT
TCGACCTTTTCTTCTGTAACAATTTCATTCAAAGATGCTTTTAGCCTATT
TGACCAGTCAGGGTCATTTCCGTTGATCAGGGTGTTTCCGAAAGCCAACA
TCCCCAACTGTTTATGGGATCCTTCTGCAATGGCCTTGCTTTGTAAGCAA
GAAATAAATTGAGCATCTGATAGAGTCTTTCTACAATTTTTCCCGTGATA
GATGTGAATCAACCCAGGATCGTAGGCTCTGACCATGGTCAAGGCGTTGT
TGCGCAAATGCTGTTTGTAAAGAGCGATGTCCTCACCTCCCCACCCTTTG
ATGGTCAAATCAAACCCTCCAACATTGAAAAAATCATCTCGGTATTGACA
AGTCATACCAAATCCGAAATCCCGCCAGAAACCCGATTCGGGTAAAATGT
TCATCTGTTCTTTTAAAGATGGTGGATCACGACCGCCGTATATTATGGAT
GGGTTGTACTGGCTAAAAACGACGGGATAATAGATTTTTGATCCGGGACT
CGTGTGTAACCGGCATCTTTCCAAGAAAGAGGAGTCGAAATAAATATCAA
TATCACAGAAGAACATGAGAACATTTCCTTTCTTCCAACTTTTTGCGCCT
TTTTGTAAACCACGCCCTCTGTTGAATTCCTCTTTAGTGAAAATCACTTT
GTAATCTTCGAAAGTCTCCTCTTTTGacattttaaggaaatatttctTCA
CTTCTTCCCTTCCTTCCATCCCAAAATAAACGACTGTTATAAAAATTCTC
CGGTCTTGGCGAATACCGACCTCCACTAATCGATCCATAAAAGCTATGAA
TTTATCGATTCGACCCGACAACGGAATAATGATGTTGATTATTTCATTCG
ATGTATCGATAGTCTCGGGTTTGCCAATCTTTCTGATGCCTTGAAAAGGT
CGTAGAACTTTTAGACGTTTGAAGATATTATTTGAATTTGCGCTTCGAAA
GAAAAGATCGTACACTGTACCGTGTAGAAAATCGTTTCGAGTAATTCCCT
CGACAAATCCATCGATCGTTACTCTATCATTATTCGATTCGACATCCCGA
TTCAAGTCTTGCAATGCGAAGTTCAAAACTTCACGAAGTTCACTCGCTTG
TTGTCCAATTGGTGAAGCCCGCGGCCGCTTAGATAAGAAACCGATCTCTC
CGAAAACATGTCTCGAATCAAACGCACTAAAGGGTATCACTTCGTGTTCA
CTCCGCGGTGAATAACTCTTTAAGAAAGTCAACtcattcaaagatttttt
attcTCGGTCATTTCATCTGTGATGATGAACTGATCCAACTGCTGGTATT
TCTTCACCAATTTCTCCAACTCCACAATCTTCTCATTCAAACGCCCAATC
TGTTCTTTACATTCCGTATTCGTGCCGGCGCTCTCTGAACGTCCTATTCT
TTTGACAGTGTAATCAGTCCTTTTCTCCATATGGTTGCATTTACACgaac
aaaacaataacaaactgaATTGTCCCAACACAAAGAGAAGTGATAGTCCG
ATTGAGCATTTGATCAAAACGGGGAAAGTTATTCGCCGCATATTACAATC
TTCATCCACTACCAActtaaaaatctttacaaaaattCCATCTTCGTTCT
CATCTTCAAGCATATCGTAATTGAATTTTCTgtgattgaaaattttcaca
gtTTAGTTCAAACATTTGCACAACTTGAAACGTGAAACAAAAGATAGTGT
TAACAAccatttataattttttctttttcaccgtGTTGTTTCATCTAGGT
GCTGTGTAAACACTCAGTCCTCATATACAAAATATCAAGTAGATAACAGC
AGTCTCGTTTTCACGCGAACACAAGTAAATGTTCTAACATTCAAACCGCA
CTCTGATTTCCCAAC Run BLAST on NCBI protein sequence of TCONS_00016340-protein >TCONS_00016340-protein ID=TCONS_00016340-protein|Name=TCONS_00016340-protein|organism=Clytia hemisphaerica|type=polypeptide|length=541bp
MLEDENEDGIFVKIFKLVVDEDCNMRRITFPVLIKCSIGLSLLFVLGQFS
LLLFCSCKCNHMEKRTDYTVKRIGRSESAGTNTECKEQIGRLNEKIVELE
KLVKKYQQLDQFIITDEMTENKKSLNELTFLKSYSPRSEHEVIPFSAFDS
RHVFGEIGFLSKRPRASPIGQQASELREVLNFALQDLNRDVESNNDRVTI
DGFVEGITRNDFLHGTVYDLFFRSANSNNIFKRLKVLRPFQGIRKIGKPE
TIDTSNEIINIIIPLSGRIDKFIAFMDRLVEVGIRQDRRIFITVVYFGME
GREEVKKYFLKMSKEETFEDYKVIFTKEEFNRGRGLQKGAKSWKKGNVLM
FFCDIDIYFDSSFLERCRLHTSPGSKIYYPVVFSQYNPSIIYGGRDPPSL
KEQMNILPESGFWRDFGFGMTCQYRDDFFNVGGFDLTIKGWGGEDIALYK
QHLRNNALTMVRAYDPGLIHIYHGKNCRKTLSDAQFISCLQSKAIAEGSH
KQLGMLAFGNTLINGNDPDWSNRLKASLNEIVTEEKVEAKR Run BLAST on NCBI transcript from alignment at sc0000232:236927..239191 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016340 ID=TCONS_00016340|Name=TCONS_00016340|organism=Clytia hemisphaerica|type=transcript|length=2265bp|location=Sequence derived from alignment at sc0000232:236927..239191 (Clytia hemisphaerica)
GTTGGGAAATCAGAGTGCGGTTTGAATGTTAGAACATTTACTTGTGTTCG
CGTGAAAACGAGACTGCTGTTATCTACTTGATATTTTGTATATGAGGACT
GAGTGTTTACACAGCACCTAGATGAAACAACacggtgaaaaagaaaaaat
tataaatggTTGTTAACACTATCTTTTGTTTCACGTTTCAAGTTGTGCAA
ATGTTTGAACTAAactgtgaaaattttcaatcacAGAAAATTCAATTACG
ATATGCTTGAAGATGAGAACGAAGATGGaatttttgtaaagatttttaag
TTGGTAGTGGATGAAGATTGTAATATGCGGCGAATAACTTTCCCCGTTTT
GATCAAATGCTCAATCGGACTATCACTTCTCTTTGTGTTGGGACAATtca
gtttgttattgttttgttcGTGTAAATGCAACCATATGGAGAAAAGGACT
GATTACACTGTCAAAAGAATAGGACGTTCAGAGAGCGCCGGCACGAATAC
GGAATGTAAAGAACAGATTGGGCGTTTGAATGAGAAGATTGTGGAGTTGG
AGAAATTGGTGAAGAAATACCAGCAGTTGGATCAGTTCATCATCACAGAT
GAAATGACCGAgaataaaaaatctttgaatgaGTTGACTTTCTTAAAGAG
TTATTCACCGCGGAGTGAACACGAAGTGATACCCTTTAGTGCGTTTGATT
CGAGACATGTTTTCGGAGAGATCGGTTTCTTATCTAAGCGGCCGCGGGCT
TCACCAATTGGACAACAAGCGAGTGAACTTCGTGAAGTTTTGAACTTCGC
ATTGCAAGACTTGAATCGGGATGTCGAATCGAATAATGATAGAGTAACGA
TCGATGGATTTGTCGAGGGAATTACTCGAAACGATTTTCTACACGGTACA
GTGTACGATCTTTTCTTTCGAAGCGCAAATTCAAATAATATCTTCAAACG
TCTAAAAGTTCTACGACCTTTTCAAGGCATCAGAAAGATTGGCAAACCCG
AGACTATCGATACATCGAATGAAATAATCAACATCATTATTCCGTTGTCG
GGTCGAATCGATAAATTCATAGCTTTTATGGATCGATTAGTGGAGGTCGG
TATTCGCCAAGACCGGAGAATTTTTATAACAGTCGTTTATTTTGGGATGG
AAGGAAGGGAAGAAGTGAagaaatatttccttaaaatgtCAAAAGAGGAG
ACTTTCGAAGATTACAAAGTGATTTTCACTAAAGAGGAATTCAACAGAGG
GCGTGGTTTACAAAAAGGCGCAAAAAGTTGGAAGAAAGGAAATGTTCTCA
TGTTCTTCTGTGATATTGATATTTATTTCGACTCCTCTTTCTTGGAAAGA
TGCCGGTTACACACGAGTCCCGGATCAAAAATCTATTATCCCGTCGTTTT
TAGCCAGTACAACCCATCCATAATATACGGCGGTCGTGATCCACCATCTT
TAAAAGAACAGATGAACATTTTACCCGAATCGGGTTTCTGGCGGGATTTC
GGATTTGGTATGACTTGTCAATACCGAGATGATTTTTTCAATGTTGGAGG
GTTTGATTTGACCATCAAAGGGTGGGGAGGTGAGGACATCGCTCTTTACA
AACAGCATTTGCGCAACAACGCCTTGACCATGGTCAGAGCCTACGATCCT
GGGTTGATTCACATCTATCACGGGAAAAATTGTAGAAAGACTCTATCAGA
TGCTCAATTTATTTCTTGCTTACAAAGCAAGGCCATTGCAGAAGGATCCC
ATAAACAGTTGGGGATGTTGGCTTTCGGAAACACCCTGATCAACGGAAAT
GACCCTGACTGGTCAAATAGGCTAAAAGCATCTTTGAATGAAATTGTTAC
AGAAGAAAAGGTCGAAGCGAAAAGGTAGCGAGAGTTTATATGTAGGTTAG
TTTTTcaaattgtatttttatataTGGTATCATTtaatagtttttcaaaa
atattttcatagaaaaagaaaaagtgattTAATGGGAAGGCACTTCCAAG
CTATTCGAATGAGATAAATTAAATTAACAATGAATACTTATGTTGAGCAA
AACTCCTTCACAAGGATACAGGGTGCAGAGTGTGTTTGCTTCATATCTTA
AAATAtccaaaaagttgaaaagatcAAAATCTATTGTACTGCTAAATTCA
TGTACATAACGAATAATCATTAAATGCATATAAGAACCCTTGTGGATTGG
AGCAAAGCGACATGTTTGAGATGAAAGGTGCCTATACATTTCGAAAAGCA
GAGATCTTTGTTGAG Coding sequence (CDS) from alignment at sc0000232:236927..239191 >TCONS_00016340 ID=TCONS_00016340|Name=TCONS_00016340|organism=Clytia hemisphaerica|type=CDS|length=1626bp|location=Sequence derived from alignment at sc0000232:236927..239191 (Clytia hemisphaerica)
ATGCTTGAAGATGAGAACGAAGATGGaatttttgtaaagatttttaagTT
GGTAGTGGATGAAGATTGTAATATGCGGCGAATAACTTTCCCCGTTTTGA
TCAAATGCTCAATCGGACTATCACTTCTCTTTGTGTTGGGACAATtcagt
ttgttattgttttgttcGTGTAAATGCAACCATATGGAGAAAAGGACTGA
TTACACTGTCAAAAGAATAGGACGTTCAGAGAGCGCCGGCACGAATACGG
AATGTAAAGAACAGATTGGGCGTTTGAATGAGAAGATTGTGGAGTTGGAG
AAATTGGTGAAGAAATACCAGCAGTTGGATCAGTTCATCATCACAGATGA
AATGACCGAgaataaaaaatctttgaatgaGTTGACTTTCTTAAAGAGTT
ATTCACCGCGGAGTGAACACGAAGTGATACCCTTTAGTGCGTTTGATTCG
AGACATGTTTTCGGAGAGATCGGTTTCTTATCTAAGCGGCCGCGGGCTTC
ACCAATTGGACAACAAGCGAGTGAACTTCGTGAAGTTTTGAACTTCGCAT
TGCAAGACTTGAATCGGGATGTCGAATCGAATAATGATAGAGTAACGATC
GATGGATTTGTCGAGGGAATTACTCGAAACGATTTTCTACACGGTACAGT
GTACGATCTTTTCTTTCGAAGCGCAAATTCAAATAATATCTTCAAACGTC
TAAAAGTTCTACGACCTTTTCAAGGCATCAGAAAGATTGGCAAACCCGAG
ACTATCGATACATCGAATGAAATAATCAACATCATTATTCCGTTGTCGGG
TCGAATCGATAAATTCATAGCTTTTATGGATCGATTAGTGGAGGTCGGTA
TTCGCCAAGACCGGAGAATTTTTATAACAGTCGTTTATTTTGGGATGGAA
GGAAGGGAAGAAGTGAagaaatatttccttaaaatgtCAAAAGAGGAGAC
TTTCGAAGATTACAAAGTGATTTTCACTAAAGAGGAATTCAACAGAGGGC
GTGGTTTACAAAAAGGCGCAAAAAGTTGGAAGAAAGGAAATGTTCTCATG
TTCTTCTGTGATATTGATATTTATTTCGACTCCTCTTTCTTGGAAAGATG
CCGGTTACACACGAGTCCCGGATCAAAAATCTATTATCCCGTCGTTTTTA
GCCAGTACAACCCATCCATAATATACGGCGGTCGTGATCCACCATCTTTA
AAAGAACAGATGAACATTTTACCCGAATCGGGTTTCTGGCGGGATTTCGG
ATTTGGTATGACTTGTCAATACCGAGATGATTTTTTCAATGTTGGAGGGT
TTGATTTGACCATCAAAGGGTGGGGAGGTGAGGACATCGCTCTTTACAAA
CAGCATTTGCGCAACAACGCCTTGACCATGGTCAGAGCCTACGATCCTGG
GTTGATTCACATCTATCACGGGAAAAATTGTAGAAAGACTCTATCAGATG
CTCAATTTATTTCTTGCTTACAAAGCAAGGCCATTGCAGAAGGATCCCAT
AAACAGTTGGGGATGTTGGCTTTCGGAAACACCCTGATCAACGGAAATGA
CCCTGACTGGTCAAATAGGCTAAAAGCATCTTTGAATGAAATTGTTACAG
AAGAAAAGGTCGAAGCGAAAAGGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016340-exon-sc0000232-1491911889:236927..239191 | TCONS_00016340-exon-sc0000232-1491911889:236927..239191 | Clytia hemisphaerica | exon |
| TCONS_00016340-exon-sc0000232-1510915933:236927..239191 | TCONS_00016340-exon-sc0000232-1510915933:236927..239191 | Clytia hemisphaerica | exon |
| TCONS_00016340-exon-sc0000232-1575043694:236927..239191 | TCONS_00016340-exon-sc0000232-1575043694:236927..239191 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000232 | supercontig | sc0000232:236927..239191 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008428 | Chond_GalNAc |
| IPR029044 | Nucleotide-diphossugar_trans |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008376 | acetylgalactosaminyltransferase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0032580 | Golgi cisterna membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0032580 |
Golgi cisterna membrane |
| molecular_function |
GO:0008376 |
acetylgalactosaminyltransferase activity |
Blast
BLAST of TCONS_00016340 vs. Swiss-Prot (Human)
Match: CGAT1 (Chondroitin sulfate N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=CSGALNACT1 PE=1 SV=2) HSP 1 Score: 332.798 bits (852), Expect = 6.332e-104 Identity = 180/375 (48.00%), Postives = 243/375 (64.80%), Query Frame = -1
Query: 490 SEHEVIPFSAFDSRHVFGEIGFLSKRPRASPIGQ-QASELREVLNFALQDLNRDVES--NNDRVTIDGFVEGITRNDFLHGTVYDLFFRSANSNNIFKRLKVLRPFQGIRKIGKPXXXXXXXXXXXXXIPLSGRIDKFIAFMDRLVEVGIRQDRRIFITVVYFGMEGREEVKKYFLKMSKEETFEDYKVIFTKEEFNRGRGLQKGAKSWKKGNVLMFFCDIDIYFDSSFLERCRLHTSPGSKIYYPVVFSQYNPSIIYGGRDP-PSLKEQMNILPESGFWRDFGFGMTCQYRDDFFNVGGFDLTIKGWGGEDIALYKQHLRNNALTMVRAYDPGLIHIYHGKNCRKTLSDAQFISCLQSKAIAEGSHKQLGMLAF 1602
+E+ +PF +F + V+ L++ P P+ + + EL E + AL+ LN E+ N+ T F+EGI R + GT+Y+L F+ + + FKRL + RPF I K+ K E ++ +N +IN+I+PL+ R+DKF FM E+ I QD R+ +TVVYFG E EVK SK F ++ I EF+RG+GL GA+ WK NVL+FFCD+DIYF S FL CRL+T PG K++YPV+FSQYNP IIYG D P L++Q+ I E+GFWRDFGFGMTCQYR DF N+GGFDL IKGWGGED+ LY+++L +N L +VR GL H++H K C L+ Q+ C+QSKA+ E SH QLGML F
Sbjct: 141 TEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIESALETLNSPAENSPNHRPYTASDFIEGIYRTERDKGTLYELTFKGDHKHE-FKRLILFRPFGPIMKV-KNEKLNMANTLINVIVPLAKRVDKFRQFMQNFREMCIEQDGRVHLTVVYFGKEEINEVKGILENTSKAANFRNFTFIQLNGEFSRGKGLDVGARFWKGSNVLLFFCDVDIYFTSEFLNTCRLNTQPGKKVFYPVLFSQYNPGIIYGHHDAVPPLEQQLVIKKETGFWRDFGFGMTCQYRSDFINIGGFDLDIKGWGGEDVHLYRKYLHSN-LIVVRTPVRGLFHLWHEKRCMDELTPEQYKMCMQSKAMNEASHGQLGMLVF 512
The following BLAST results are available for this feature:
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