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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016366 ID=TCONS_00016366|Name=TCONS_00016366|organism=Clytia hemisphaerica|type=transcript|length=4835bpRun BLAST on NCBI transcript from alignment at sc0000233:120151..230501- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016366 ID=TCONS_00016366|Name=TCONS_00016366|organism=Clytia hemisphaerica|type=transcript|length=110351bp|location=Sequence derived from alignment at sc0000233:120151..230501- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016366 vs. Swiss-Prot (Human)
Match: DYH1 (Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4) HSP 1 Score: 147.132 bits (370), Expect = 4.811e-35 Identity = 171/797 (21.46%), Postives = 303/797 (38.02%), Query Frame = 2
Query: 8 IKMNPMYGCLLTCDERLMEWKRVPDNLRRCMTPIGMKIPDYRYIFECWLTIYGFTTCQSLAEKLALLLKVSQYEVGLTASKVYSIIVTAAKQIHIDQGSDAKENVLLAKALVNSIRLHVSSQQSASVGRQVQTIFSLSKDAFGPTSSQSHN--ALLVDAIKEQIKADQLEPKAELITKVLELQSLLCTNQAVIIYGSCATGKSTCYQTLSRALCQFHSPWSLQADTLESLKNENFARVNLKVVYPNALSQGEIYGCYDQSTQTWNDGLVVKLLRQFSLWKDVERSQTFDHTGQDHICSDIQQWLVMDGSVQSSSNWTYEMEGLLDTFKVVVMQNRKRLKTTRTSKLLFEMESLAHCTPSLLSRSSWLYF-PELQTVT--WECVYYSWSKMMHSKYAIPIHYFEELKTALVYTLEPTIKYMDQELSLAYHTKNKHDGGDLSCNIECGYILQILSALLHHWINKDXXXXXXXXXXXXXKEFVTKFLCNALALSFGYGLSPLVDRESIP---KLDLFIRQVFSTCPPCSVIFPTSFNDCYFDGVTGEMKLWNEQKAQSTIPMASSS--------------FVVTREIQQCYTLTDMLLSCQKNCMLIGDVATGKS-------------QFVKHLLTFKHHINRIQISNAMTVTRLQSILMEKVSELRNKHMTKLKLKQMTTSSFHSSKKMDSYLMFLDDLSSGCLTKXXXXXXXXXVVEQPLYELTRQLVVEGGCYNMK-GNNFHLLPNLQLLITHTPTGTQPSSLNMRLLRNFCLINYVNLSHKDWASIFQRPCQAWVD 2290
I MNP Y +PDNL+ P+ M +PDY I E L +GF LA+K+ K+S + L++ Y + A K + G+ +EN + + L+ +R + ++ + D F PT + +L +AI+E + L+ +TK ++L +++ G +GKSTCY+ L+ A+ S+ E+ VN V+ P +++ G++YG +D T W DG+ +R ++ D + +W + DG V + W M +LD K + + + + +K T ++FE++ LA +P+ +SR +Y P + + EC ++ Y E K V LE +I ++ + + N CN+ +L++L ++ ++ E + + +L S G R S +L + Q+ P ++F D G E K + + SS V T + Q L DMLL+ +K + IG TGK+ ++ H LTF S + + Q + K+ + R K + L + +++ F+DDL+ L + QP EL RQ + GG Y+ K F L ++ + P G +++ RL+R+F +++ + IF W+D
Sbjct: 1681 ITMNPGYAGR----------TELPDNLKALFRPVAMMVPDYAMITEISLYSFGFNEASVLAKKITTTFKLSSEQ--LSSQDHYDFGMRAVKTVISAAGNLKRENPSMNEELI-CLRAIRDVNVPKFLQEDLKLFSGIVSDLF-PTIKEEDTDYGILDEAIREACRNSNLKDVEGFLTKCIQLYETTVVRHGLMLVGPTGSGKSTCYRVLAAAMTSLKGQPSISGGMYEA--------VNYYVLNPKSITMGQLYGEFDLLTHEWTDGIFSSFIRAGAITSDTNK-----------------KWYMFDGPVDAI--WIENMNTVLDDNKKLCLSSGEIIKLTEAMTMMFEVQDLAVASPATVSRCGMVYLEPSILGLMPFIECWLRKLPPLLKP-------YEEHFKALFVSFLEESISFVRSSVKEVIASTN--------CNLTMS-LLKLLDCFFKPFLPREGLKKIPSEKLSRIVELIEPWFIFSLIWSVG-ATGDSSGRTSFSHWLRLKMENEQLTLLFPEEGLVFDYRLEDAGISGTNDSEDEEEEYKQVAWVKWMDSSAPFTMVPDTNYCNIIVPTMDTVQMSHLLDMLLTNKKPVLCIGPTGTGKTLTISDKLLKNLALDYISHFLTF---------SARTSANQTQDFIDSKLDK-RRKGVFGPPLGR-------------NFIFFIDDLNMPALETYGA---------QPPIELLRQWMDHGGWYDRKIIGAFKNLVDINFVCAMGPPGGGRNTVTPRLMRHFNYLSFAEMDEVSKKRIFSTILGNWLD 2387 HSP 2 Score: 117.472 bits (293), Expect = 4.944e-26 Identity = 125/561 (22.28%), Postives = 251/561 (44.74%), Query Frame = 2
Query: 2999 TLDHAHNLYSALQTANGHCLLISDKSHGRRKMINIVSKLMRVEVFQVPPPNSTDSITIENTFNVIKDACNAAGLNGKPV--ILSIQGNMSDEVDQCLSALLCDGFCPGFYEPSEIALVITQHLPGGHLNNVRKINNISQLVERFFQRVRNNLQIVVGIKRSEMCDF----LTRFPTILHKFHLVDFYGNNDAHFWSAFSTRWL--IENMTGEDIDAPNLSELIGTVHH-VTKQQLNETCGAEADRYISPLKLMECLQIFKKLFHSIREVSQKRSAYLNKAMAKVFQAKEDIRKSQDEIDRLQPLLETARSIAEDAEKVMKSAQ-ESYLTVKKSCEDQYTEI---ERLKIPCEQLRKETNQDFEQLSPLFQAALEALNMLSKGDIVEMKSYPAPPEGVKLVAILLCVLFDVP-------------ESYKEAI--LLLRSDNFIQRLQFLDKDNISDSAYRKLCKFVNDPETQPTVVASKSRAAEQLCLWLRGIHSYCTIYRQLQPKKQSLKEAELKIAKAESKLCEMKLRTSDLRDLLEKEIVNYKGKMKIVKGLEKKQQVC 4597
+ H + L+ A G+ LL+ GR + + S + E FQ+ + + + + +K AGL P+ + S ++ + ++ +L G P Y E +++ P ++ + L+ + RVR+N+ +V+ + S + + L +FP++++ +D++ A + +T +L I + + L ++ +H V+K+ + Y++P +E L IF L + + + + K+ + ED+ K Q++++ + PLLE A A+D M+ + ++ + + Q EI E+ K + + + +D ++ P AAL +L L+K D+ E+++ PP GVKLV +C++ + + Y E LL +F++ L DKDNI D + + ++++ E QP +A S+A +C W+R +H Y + + ++PK+Q+L EA+ + + L E K R ++ D + Y+ + + LE K + C
Sbjct: 2564 AMSHICRISRTLRQALGNALLLGVGGSGRSSLTRLASHMAEYECFQI---ELSKNYGMSEWRDDVKKVLLKAGLQNLPITFLFSDTQIKNESFLEDINNVLNSGDIPNLYTADEQDQIVSTMRPYIQEQGLQPTK--ANLMAAYTGRVRSNIHMVLCM--SPIGEVFRARLRQFPSLVN-CCTIDWFNEWPAEALKSVATVFLNEIPELESSQEEIQGLIQVCVYIHQSVSKKCIEYLAELTRHNYVTPKSYLELLHIFSILIGQKKLELKTAKNRMKSGLDKLLRTSEDVAKMQEDLESMHPLLEEA---AKDTMLTMEQIKVDTAIAEETRNSVQTEEIKANEKAK-KAQAIADDAQKDLDEALPALDAALASLRNLNKNDVTEVRAMQRPPPGVKLVIEAVCIMKGIKPKKVPGEKPGTKVDDYWEPGKGLLQDPGHFLESLFKFDKDNIGDVVIKAIQPYIDNEEFQPATIAKVSKACTSICQWVRAMHKYHFVAKAVEPKRQALLEAQDDLGVTQRILDEAKQRLREVEDGIATMQAKYRECITKKEELELKCEQC 3112 The following BLAST results are available for this feature:
BLAST of TCONS_00016366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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