TCONS_00016427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016427
Unique NameTCONS_00016427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2024

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016427 ID=TCONS_00016427|Name=TCONS_00016427|organism=Clytia hemisphaerica|type=transcript|length=2024bp
ttccaggattcagcaaaaatcttGATGGGAAAACAGTAGTTCAAAACAAA
CCCCCCTGTCTAGTCTTCActgaatttaaaaattcaatgaaaaaagcaaa
agGTTGCAAAAAACACCAATGAAATTTAATTCTTTACAAAATTTAACCAA
ATGTCAATAAAATAATACTAAAGAAATGGTAAAAATTAGCAGCATTTCTT
TTCCTCAGGTTTTTTTTTATCTGGAAAACCTTGATGTTGAAAAGCTGGCT
GCTCAGGAGGAAGCTTTTGCCCTATTTGttcaaatatatcatttacATTT
TCAGCATTCAAAGCAGAACACTCAGCAAAAACAGCACCAATTTCATCTGC
AAAGCTTTGCCCTGTTTCTGTTGTAACTTCTCTTTGGTCaactaaatctt
ttttattcCCAGCAATAGCTATTACAATGTTTTGCGGCCCCATCTGCCTC
AATTCTTTGATCCAACGTTTGACACTTTCAAAACTCTGTTCTAAAGTTAT
ATCATAAACAACAACAGCAGCAGCAGCTCCTCTATAATACATTGGTGCAA
GGGCTTTGTATTTCTCTTGTCCTGCAGTGTCCCATATTTGAAACTTAAAT
GCTTGATCCTCAATCCGAAAGTTTTTAGACATGAATGAAGCACCAATCGT
AGCAGTTGAGTGAATTTCAAAACGGTCATGAACAAATCTCATCGCAAGGC
AGGATTTCCCCACACCAGAATCACCCAAAAgacaaagtttgatttctctA
ACTGCATTAAAAGccattttaaaattcaaaagttatacCTGATCATAAAC
AAGAAGTTGAgatttgttttaatgtttgcaTAGACGTTTGCTTGGCTTGC
TCTTTATGCTCGTGATTCACTTTCGaaatcaaaactttgttttgatactt
caagTTATAGCATATAGAATCGAATAGATTATTTAGCAAAAGAGATGTAC
ATTTCCGGTCCCTTCTTTGGACAACTTTGAGTAAAAATCAACCAtgctta
aaaacttttcactaaGATCTTAATATCACTGCTTCAAACTACTACTTTGA
TTATGTAATCTTATTACTTTGGGAAATGGTACGAAAGCTGTGATCGGAAA
AAACCCTGATTTCAAAGTGTGAGAAAATGGCTGCGGAAGATACTACAAGC
tcaaattctgaaagatttgtAGCTCCTTGGGCTACAGGAGACAAATTAAG
AAAAATCGAGGAGGAAGTTCTTATAcctaatttgatgaagaagaaggcGA
AAGTTATTTGCAAAGAATATATGGAttCTTTCGGTAAATGTGTGGATGGC
CGAACCATATCTATTGCATGGTCATGTGGAGCAGAGAGAGATGCCatgaa
aaattgcttgaaagcacaGTTAGATAAGCCATCATTGTACAGTGAATCTC
GTCGCGAATATCTCCAAGAAAGAGAAGAATTTCAACAGAGTTACGTCGAA
ACtggtaaaaagaagaaaatcggACGAAAGGAGTCTGCATTTTAGTAAct
tcttgaatatttttaatcaCAACTGTTACATACTTGTCTTGGTGACTTTT
AACAAGTTTAGAATTCCAAGTACCTAAATGAcatgtgtcaaaaaaaaaaa
ggaaaataataataatatggagATAACTCATAACTAAGTTTGAAATCGGT
TTGACATGCTAGGGATTCTTTGTTCATCCAGTAGACATTCATTTCTTGCA
GGCTAAATATGTTTAAGTgataaaactttgcaaaaaatgtTATTAAACCT
ATCCATTTAAAGAGTACATCTAAATTACTAtgcttaaaaatttattttta
gcaaaaaaatatcaagtacgaaaaattgaaattattttctttgtaaatac
tttttttgtgaaatatttatattacgtaaaagaagaaaatttaaatCTGA
TTTATGAATGTAATGTAATGTCTTTCTTATCTCACATTTGAGTTCAGAGC
AGTTTCCCAATTAGGATGAAATTGTAAGGTGTTTTTTCTAACCGGGGCCT
TTTTATTCATTAGGGTCCCACCGG
Run BLAST on NCBI

transcript from alignment at sc0000237:59451..65551-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016427 ID=TCONS_00016427|Name=TCONS_00016427|organism=Clytia hemisphaerica|type=transcript|length=6101bp|location=Sequence derived from alignment at sc0000237:59451..65551- (Clytia hemisphaerica)
TTCCAGGATTCAGCAAAAATCTTGATGGGAAAACAGTAGTTCAAAACAAA
CCCCCCTGTCTAGTCTTCACTGAATTTAAAAATTCAATGAAAAAAGCAAA
AGGTTGCAAAAAACACCAATGAAATTTAATTCTTTACAAAATTTAACCAA
ATGTCAATAAAATAATACTAAAGAAATGGTAAAAATTAGCAGCATTTCTT
TTCCTCAGGTTTTTTTTTATCTGGAAAACCTTGATGTTGAAAAGCTGGCT
GCTCAGGAGGAAGCTTTTGCCCTATTTGTTCAAATATATCATTTACATTT
TCAGCATTCAAAGCAGAACACTCAGCAAAAACAGCACCAATTTCATCTGC
AAAGCTTTGCCCTGTTTCTGTTGTAACTTCTCTTTGGTCAACTAAATCTT
TTTTATTCCCAGCAATAGCTATTACAATGTTTTGCGGCCCCATCTGCCTC
AATTCTTTGATCCAACGTTTGACACTTTCAAAACTCTGTTCTAAAGTTAT
ATCATAAACAACAACAGCAGCAGCAGCTCCTCTATAATACATTGGTGCAA
GGGCTTTGTATTTCTCTTGTCCTGCAGTGTCCCATATTTGAAACTTAAAT
GCTTGATCCTCAATCCGAAAGTTTTTAGACATGAATGAAGCACCAATCGT
AGCAGTTGAGTGAATTTCAAAACGGTCATGAACAAATCTCATCGCAAGGC
AGGATTTCCCCACACCAGAATCACCCAAAAGACAAAGTTTGATTTCTCTA
ACTGCATTAAAAGCCATTTTAAAATTCAAAAGTTATACCTGATCATAAAC
AAGAAGTTGAGATTTGTTTTAATGTTTGCATAGACGTTTGCTTGGCTTGC
TCTTTATGCTCGTGATTCACTTTCGAAATCAAAACTTTGTTTTGATACTT
CAAGTTATAGCATATAGAATCGAATAGATTATTTAGCAAAAGAGATGTAC
ATTTCCGGTCCCTTCTTTGGACAACTTTGAGTAAAAATCAACCATGCTTA
AAAACTTTTCACTAAGATCTTAATATCACTGCTTCAAACTACTACTTTGA
TTATGTAATCTTATTACTTTGGGAAATGGTACGAAAGCTGTGATCGGAAA
AAACCCTGATTTCAAAGTGTGAGAAAATGGCTGCGGAAGATACTACAAGC
TCAAATTCTGAAAGATTTGTAGCTCCTTGGGCTACAGGAGACAAATTAAG
AAAAATCGAGGAGGAAGTTCTTATACCTAATTTGATGAAGAAGAAGGCGA
AAGTTATTTGCAAAGAATATATGGATTGTAAGTATTTTTTAGAATAAGCA
AAGGATGGATAAATTTATTTTGTCATCTTTTTTTTTCCATTTCAAATTTT
TATCGATTTTAATGACATTTTAATGTAGGTTATCTGCAGAGATTCAGTTG
AAAAATGTTGCTATTATAGTCGTTTGGGAGAACGTGAGGGTCTTTTGAAT
AGCTAATTACTGTATATTACTCCAGCAGAAATTTTTTTAAATGATATAAC
ATATCATTATAATAAAGGATCGATAATCGGAACGGATCGATGAAGGATCG
ATAAAGGATCGATAAAGGATTGATAAATTACTTATTGATTCCGATAAAGG
ATCGATAGAAGATTGAGCTCTAAAAAATCGTGAGTATCGATCCTTCTATG
ATCTCTTATCATCGATCTTTTTTTCAATCAATCTTCTATCGATTACTTAT
CGATCCTCTACCGATTACTTATCGATCCTCTACCGATTACTTATCAATCC
TCTACCGATTACTTATCGATCCTCTACCAATCACTTATCGATTACCTTTT
GATTATTTATCGATTACCTATCGATCTATAAGGGTTACGGAATTATGTAT
CGATCAATTATCGAGCAGTTATTGATCTTTTATCGAATAGCTATTGATCA
ATAGACCTTTTTCAAAGAGGCCACCCTGTTGAATAATTATGTAGTCCAGC
AGAAAAACAATGATAAAACCATGCATAATTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCA
TGATACAGTAATTATGCATGGCTCTATCATTGTTTTTATGGCTGGACTAC
ATAATTATTCAACAGGACGTCCTCTTTGAAAAAAGGTCTATTAGAATTAT
CGAATACTCGTTACAATGACCATTTGTCCGTCCATTGCAGTTAACGATAG
CCCGATCGAGAGTAATCTCTGAACAGATTCTAATTTTCCGTACATGGCAC
GTATTCTCTCTAAAGACCATATGGGACCCCGTAAGAGAATCTGTCCAGAT
TAGGGGCACCACTTGGATCTTTTTCATCTAGATTTGAAATAGATATCGAT
AATTGAATGAGGTTTTGGGCGCGGTGATTGGCTTTGAGTAAGGAAATAAT
TGCACCAAATCAAACATCGGTCATAAACAATCTGGGAACATTAGAGCCAG
CCCTTTCCCTGTGTATCCATTGCTTTATGAACATTACTACGAAGGGTGGT
CGTAAGGAACCATTCAAACAGTACGTGCGCTATAAGGGGGTACCCCTAAC
TTCAAAAAGCGTACGGAAGCGTACTTTGAGGAGGGGAGAGGGAATTAGTC
GACTAGTTTAATAGTCTAGTTGAACCCGACTGGGGATGCGGCACATCAAA
GGCCGACCATCATTCCTCTCCGATGGGAAATTGGCCTGCTCCTATCCTTT
AGAGCTGTAGCGTGGGCGGTTGCCAATCCGCCATCGGAATATCAGATACC
GAAATTCTCACCCAATGGAAATTTGGAAAGTCCTTATTATCCGCTAAAGT
ACCCAGAAAAATCTGCTTTTGTCCCTACTACCAATACATTTTTGAGATCG
ATAAAAGATCGATATCAATTGGATCGATATATTTTTAGAATTGATTGTTT
GATTGGATCGATAAGATCAATAAGTAATCGATATCCTATGGGATCGATAT
AATTTTACAATCGATAATTTGATTGGATCGATGTAAGATTGATAAGTGAT
CAATAAATGATCCTGACCAAAAAATTCTTGAGTATCGATCCCAACTCGAT
CCCTTATCGGAATCGATAAGTAATTTATCGATCCTTTATTGATCCTTCAT
CTATCCATTCCGATTATCAATCCTATCAAGCCCGATTCTCCTAAATTACT
ATTCTATGCTTTTTCTTTCCTCAGCTTTCGGTAAATGTGTGGATGGCCGA
ACCATATCTATTGCATGGTCATGTGGAGCAGAGAGAGATGCCATGAAAAA
TTGCTTGAAAGCACAGTAAAGTTTTATTTTATTTTGTTTGATACACAAAG
TAACAGTTAGGCCGTTCGTTAAAAATCCCTTGGTTCCCGTCATTCCAACC
ATCAAAAAGTGGGTCGGTCGGTCGGGCGAAAAATACTTTCTGTTTGAAAG
AAACAGTCCAAGAGGGCGGAATTTTCCTTAGATAAGGGTGGTAAACGAAC
GTTTGATCGCTCTAAGCCTCTTTTTCACTTCACAAAAGCTCCGCTGGTTT
GTTTTGATGGTCCGCAATGAAAAATCTGAGTTGAAAATCGGGAAAAAACG
GAATTAACGGGTTTCGAATTGTTTTTTGGGCGAGATTAGCGTTTGCTCTT
TCTCTCAAAAAAGAAAACATGGAGGGTGATGGTGGAGTTTCAGCTGTCAG
GAAAAATGGTTTCCGACTCTCCGACTCTAATTTTTCAGTAGAAATCACGG
TCGGCCGGGTGACGGGAACGTCTTTCAATTCCTGTATTAATAACACGCAT
GTGTAATTTTTTTCGTTCTTTTAAACCACATGTCAGTCAGGGTTGGAGCT
CGAAACATTGCATCATTATTTAGATGATCTGGAATTGATGAGCACAAACT
TAAAAGGGAAATGGTTAAGTCTGTAAAATGTAGAAGAGGCTTTCTTCTAT
TTCTTCGATTGTAGAAAGGTCCTTGAACAATTTTTAATGTACCACATTAT
AATGTGCGACATGATTTATAATGTAGGACATTATAATTATTAAAAACTTA
CATATAATGTACAAGATTATATTCCGTGGTGAGTTAGGGCTGCGTGAATA
TGCTATCTCAAAATCGTAAGTACCGCGTTTATCTAAACTGCTAAAAGCAC
TGGGAATGGCAATAAAGTTGCGTGATTGTGTTTATGAATAGGGTGCCATA
TCAGGAAAATTTAATTTTTGACTTTCTGACACACAACAGAAGTTAAAGCC
CCACAAATACAAATATTTACGTCATTGCATAGCATATGCATGTTTGAGAC
TCAAAAAATATGAATTCTGCTAAGCATGTAGCCTGGAGATCTATGCTATG
ATTTCTTATTCTATATACTGATGGTGAAATATACAGATTATAAAAATACA
GGGTGGTTCTCCTGTCTACTAAGCATGAGGCTCACAAAAATTTATCTTAC
CTTACCGGGGGAAAAAATGTCTGGGGAAAGTGACGAAAATTTTGAGGGAG
TGACGAAATTTATCCCCGACGAAATTTATCTCGTCCAAAACTTTTACTCA
ATTTTTTCCCCTAACTAAAATTCAAGTCCAAATTTTTTACGCCTTTATTA
ACAGAAATTAGTGCTTTAAACGTCGAATTACAAGATCTATTTTCGAGCTA
GTGAAGAAAACCATTTCATTTGGACAATTTAGTCAGATGGAAGTGACTAT
AAAAATTGTAAATTTGGTCGGGGAAAAGTGACAAATTTGAAATTTTGGTT
GGGGAAAAGTGACGAAAATGCCTCTAGGTGACAATTTTTTTCCCAGACTA
ATTAAAACCCCGACATTTTTTTCCCCGATAAGGTATGTGCTTATATAAAA
AATGTGTAGCTTTAATTGACCTTTTGCACAATTTGTGAAAAAATTTGAGA
AAAACCTTGAATTTTTTTAGTTTAAATTAAAGATTTTATTTCGAAAAAAT
CCTCTTTTAAACCTGTTTAAAAAAGAAAATCAGGAAAAGTTAGGGAATTA
CTGTACAACTCTTTAAAAAATATCAGAGACAACTCTAAGAATCTTTTTTC
ATCTAGATTCAGAAAAAAGCCTCTTTTTAAGCAATTTTGTCAGGGCAAAA
AGATTTTTAACCAAAAGTATAGGGGGAGAGTATTTCAGGAAATTGTTATC
CCAGCTGGCACACAACGTTGTTTTAACGTTCAAATAACGTTAATTGGACG
TTACGAATGTCAAATGGACGTTGTTTTGACGTTGTGTGCAGGCTGGGATG
ACTCTACTTGGGTAAACATACAGTGTGCCCCAAAAAAAGTACAGTAAACT
AATTTTTATATAAAGTATAATAAATTTTCGGCCACACTATCAAGTTTTGA
ATTGAATTGAAGTTTTGTCTGATTTTTTCTCAAAAAGATGTGCCCGACAT
TATGTTTCAGTTTTAACTTAAGTTTGCATTTTATCCTTTCTTCAGGTTAG
ATAAGCCATCATTGTACAGTGAATCTCGTCGCGAATATCTCCAAGAAAGA
GAAGAATTTCAACAGAGTTACGTCGAAACTGGTAAAAAGAAGAAAATCGG
ACGAAAGGAGTCTGCATTTTAGTAACTTCTTGAATATTTTTAATCACAAC
TGTTACATACTTGTCTTGGTGACTTTTAACAAGTTTAGAATTCCAAGTAC
CTAAATGACATGTGTCAAAAAAAAAAAGGAAAATAATAATAATATGGAGA
TAACTCATAACTAAGTTTGAAATCGGTTTGACATGCTAGGGATTCTTTGT
TCATCCAGTAGACATTCATTTCTTGCAGGCTAAATATGTTTAAGTGATAA
AACTTTGCAAAAAATGTTATTAAACCTATCCATTTAAAGAGTACATCTAA
ATTACTATGCTTAAAAATTTATTTTTAGCAAAAAAATATCAAGTACGAAA
AATTGAAATTATTTTCTTTGTAAATACTTTTTTTGTGAAATATTTATATT
ACGTAAAAGAAGAAAATTTAAATCTGATTTATGAATGTAATGTAATGTCT
TTCTTATCTCACATTTGAGTTCAGAGCAGTTTCCCAATTAGGATGAAATT
GTAAGGTGTTTTTTCTAACCGGGGCCTTTTTATTCATTAGGGTCCCACCG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009174XLOC_009174Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016427-exon-sc0000237-1575043694:64275..65551TCONS_00016427-exon-sc0000237-1575043694:64275..65551Clytia hemisphaericaexon
TCONS_00016427-exon-sc0000237-1575043694:62237..62327TCONS_00016427-exon-sc0000237-1575043694:62237..62327Clytia hemisphaericaexon
TCONS_00016427-exon-sc0000237-1575043694:59451..60106TCONS_00016427-exon-sc0000237-1575043694:59451..60106Clytia hemisphaericaexon
TCONS_00016427-exon-sc0000237-1510915933:64275..65551TCONS_00016427-exon-sc0000237-1510915933:64275..65551Clytia hemisphaericaexon
TCONS_00016427-exon-sc0000237-1510915933:62237..62327TCONS_00016427-exon-sc0000237-1510915933:62237..62327Clytia hemisphaericaexon
TCONS_00016427-exon-sc0000237-1510915933:59451..60106TCONS_00016427-exon-sc0000237-1510915933:59451..60106Clytia hemisphaericaexon
TCONS_00016427-exon-sc0000237-1491911889:64275..65551TCONS_00016427-exon-sc0000237-1491911889:64275..65551Clytia hemisphaericaexon
TCONS_00016427-exon-sc0000237-1491911889:62237..62327TCONS_00016427-exon-sc0000237-1491911889:62237..62327Clytia hemisphaericaexon
TCONS_00016427-exon-sc0000237-1491911889:59451..60106TCONS_00016427-exon-sc0000237-1491911889:59451..60106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:59451..65551 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.1281	28.0965	27.0011	24.9007	23.4869	19.1013	16.3601	16.0455	16.1259	15.894	13.8626	10.6228	9.08705	7.15537	9.54549	11.2682	15.4809	15.0853	7.16871	9.65415	13.8908	14.3806	18.1987	16.8713	14.4808	15.752	13.9642	11.5563	16.1632	14.1689
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00016427 vs. Swiss-Prot (Human)
Match: RB22A (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 1.254e-59
Identity = 95/166 (57.23%), Postives = 130/166 (78.31%), Query Frame = -1 
Query:  258 AVREIKLCLLGDSGVGKSCLAMRFVHDRFEIHSTATIGASFMSKNFRIEDQAFKFQIWDTAGQEKYKALAPMYYRGXXXXXXVYDITLEQSFESVKRWIKELRQMGPQNIVIAIAGNKKDLVDQREVTTETGQSFADEIGAVFAECSALNAENVNDIFEQIGQKLP 755
            A+RE+K+CLLGD+GVGKS +  RFV D F+ +   TIGASFM+K  + +++  KF IWDTAGQE+++ALAPMYYRG+AAA++VYDIT E++F ++K W+KELRQ GP NIV+AIAGNK DL+D REV     + +AD I A+F E SA NA N+N++F +I +++P
Sbjct:    2 ALRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167
The following BLAST results are available for this feature:
BLAST of TCONS_00016427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB22A1.254e-5957.23Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
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