TCONS_00016439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016439
Unique NameTCONS_00016439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016439 ID=TCONS_00016439|Name=TCONS_00016439|organism=Clytia hemisphaerica|type=transcript|length=443bp
TCAATGGTGTCCCTACAGATCCATTGACAGAAGAAAGGAGAGAAGAAATT
ATTGTTGAAGTAACTAAGTTAGAAGATGAAATCAAGACGTTGAGACAAGC
ACTTTTACGTAAAGAAACACAACTCAATAACTTAAGAACAGAGCTAGGTG
AAACAAGATGGGCAAGACTTCAAAACTCTCAGGCcgTACAAAAATCAAAG
CAAGCAATTTCAGATGCTGGAAACAAAACATCACAGGCATTGAAAAATGT
TGGAAATATAACTGCTAGCAAATGGCAAGAAATTAAAGAATCACAACGCT
ACCAAAATGTATCTGAACGATTTTGGAGTACAACTGGGGCAGTTAAGatg
aaatttttcgGAATGCCTTTAAGACAATCGATAACGGGAGTGCCAGCTGG
AAGTAGCAGTTTATAACCAATGAGTCAATTGAcattaaaatat
Run BLAST on NCBI

transcript from alignment at sc0000237:393380..396813-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016439 ID=TCONS_00016439|Name=TCONS_00016439|organism=Clytia hemisphaerica|type=transcript|length=3434bp|location=Sequence derived from alignment at sc0000237:393380..396813- (Clytia hemisphaerica)
TCAATGGTGTCCCTACAGATCCATTGACAGAAGAAAGGAGAGAAGAAATT
ATTGTTGAAGTAACTAAGGTGAAAATTTCGAATATATTTATCAATCAATA
ATTCCTGTTTGCAGGAATTTGCAACTTTTTTGAAAGTTGAAAGTGAACTT
TAAAAATTTAATGCCGGGAAACAAAAGTAAGTTAAATTGGTGCAATAAAG
TAGTGTCGATAAAACCATTTAACCCAGGACATTTTATAATACTTTTCGCC
ACTGGCCAATAATACCAGACAGTTGGATGCGTCGCCAGGCTAGAAATGGT
GCACAGTACACCGAATATATTCGNAGTAGTGTCGATAAAACCATTTAACC
CAGGACATTTTATAATACTTTTCGCCACTGGCCAATAATACCAGACAGTT
GGATGCGTCGCCAGGCTAGAAATGGTATGGTGGCACAGTACACACACCGA
ATATATTCGGAGTGAGGCAGTAATTACTTTTGGCATATTGACATCATGAC
GCCAGGTTTAAGCCTCTCCCTCAACCGCCATATAAGGACGTAGAGTGTAA
ATATAATTATTTGAGCAACTTTTAGGGGCGAGAAAATCAAATATTCTTGT
GCCAAACCCTGGACCAGTTTAGGGGTTTTACAGCGCCCCACCCCCCCCCC
CNGACCACCATATAAGGACGTAGAGTGTAAATATAATTATTTGAGCAACT
TTTTTTAGGGGCGAGAAAATCAAATATCCTAGGGCCAAGCCCTGGACCCG
TTTAGGGGTTTTACAGCGCCCCACCCCCCCCTTTCATTTTGATTATCAAC
CACTAACAGTCTTTTCCCGTTACGAGTTACTTTGAATATGGATGCCGCCC
CTAAAACTGGTAAAATTAGCAAATTTTAGCTATTTTTGTAATTCTTTTAA
TTTTTTGGATGACTTTACTGAAAAAGTCTGACAATTTTTATAATTTGAAA
AAAATTTCTGTTGGAAAGTTGTTTGTTGCAAACAAAAAATTCTTGAAATT
TTTTTTCAATATAAAAAAGACTTTAATTCTAAGGGCAAAACATTAATTTT
TGCACTAAGTGAATTAAATGTGTCACAGAAATAATCATTTTTTAGCTTTT
TTTGTAAAATAAGTCCAAAAAGCAACCAAAAATAGGTGGTCTCCATGACA
AATTGTCCCAAAAATTTTTACTACTAGGGTAGTAAAATACCTCTTCCAAG
AGTCTGGGTGGGATGTAAAAATTCGTAAAAATCCTTTTACCGCTGTCTGA
GATTTTACTACCGACCCCCCCTGCCCCCAGCGGTTTGCGTAAATGCGTGA
AAATTAAAAAAAAATTGCGTGAATGCGTGAATTGGAAAGCTTTGCGTGAA
AAAAAATTGCGTGAAATGTTGAAAAACATTGTGTGAATGCGTGAATTTGG
GAAAAAAAATTGCATGATTGTGTGAAGTGAAGGTTGACTGGAGGGCCTCC
CTGACCGACACACCTTGTCTAATCTCCTCATACAGTAGCAACTATCTGGT
CTACAAATTAGTTAAAGTGATTGTTTTTTCAAACAGCTTACTCAGCAGCT
TTTTTCAATAAACATTTACCGCCAATGGGCTCTAACTTGGGACTATCTGA
CAAAACATGGGACAGCAATTCGGCCACCATTTCACCAAACCTCCAAAGTC
ATTTAATTAACATAACCATGAATCATAGATAGCAAATGATGTGAATACGC
TACTCTCATCAGGCTTTTACACCACAAAAGGAACAAATCTTTGCAACGAG
AAACGCATAAATGCGATTGCGTGCATTCGCACAAGCGTCCAAACACAGAT
ATAAAAAAGTCCGTTCCACAGTGGAAAATTGTGAGATCTACTGTTATCAA
GACTCTGTAACTTTGACATGCCAATCAATTGCGCACACTGGAAAAAAGTC
TATAGAGAAAAACAACAAAAAACAAANTAACTTTGACATGCCAATCAATT
GCGCACACTGGAAAAAAGTCTATAGAGGAAAACAACAAAAAACAAAAACA
AGAATTAGCGTCAAGATGTGAACAATGTGTGTGTGATTAAATTGTTAAAT
TTACTTCTTCAAATTATATAATTTTAAAATGCTTTAAAGATACATTTGGT
TGTGATTATGGGGTGGTGAAAGTTTGATTGATAAACTTGATTGAAGTATC
AGAACTAACTTGTTTTCAAAGAGATTTTCAAAACTTATCTAAAAACAAGA
TCTAAATTCAAGAGAACAGATCGCATAATTGCAAGAGACAAGGTATGTTG
GTATTACACCTACCTGGGCTTTGAAGCATGATTTACATGAGAATAATAAT
ATAAAGCTGAACAGGTTGGCAGTGCCAATCTTAAAGCCAATCTAAAATGG
TCAAAAACCAATCTTATTTTGACCGGCATGATTTAAATTGTACTTCGCCT
AACTACTGTACTTAGATGGACATAACTTCATTTGTCATCATTTCATATTT
TAGTTAGAAGATGAAATCAAGACGTTGAGACAAGCACTTTTACGTAAAGA
AACACAACTCAATAACTTAAGAACAGAGCTAGGTGAAACAAGATGGGCAA
GACTTCAAAACTCTCAGGCGTAAGAAATGAACAAGTTGATATTTTTCCCT
CTAAGAAATGTGCTAAAATATTGCACAAATAAGATTTTTTCAACTTTCAA
CTTATCCATCTGCAGACATATGGGTTTAGTAAACCAACCATTAGAATCCA
GCCCAGTGAGGCTTGAGTAGAGATTTTTTATAGTCTCTGATTTAAAATTT
CATTTTTCATTTTTCAGCGTACAAAAATCAAAGCAAGCAATTTCAGATGC
TGGAAACAAAACATCACAGGCATTGAAAAATGTTGGAAATATAACTGCTA
GCAAATGGCAAGAAATTAAGTAAGATTAATTTAACTCAGTACTTGATATA
CCCAACCCATTTGAAATTGTATTGTTGAACCTCAAAAGGCATATTTTGAT
TGTAACTAGGTCAAGAGCCTAACTCACTTCTGTTACCTTTGATAGCTGAT
GTTTTGAATGACGATTCAATGATAATCTTAGATCTGTTTAGTGAGGTTTT
TACTTTTCTGATGTTAATGGTTTTTTTTATTTAATTCAGAGAATCACAAC
GCTACCAAAATGTATCTGAACGATTTTGGAGTACAACTGGGGCAGTTAAG
GTATGAATTCTATTACTATGCAATCAAATAATCATTGAAAATTCTTTCTT
GTGGTAGGTTTTTCATGAGAATTGAATATTTTAGAAACTAACAAAGTCAT
CTTAAAACAACATTCCATGCTTAAAAGGCTATATTAAAAGACAAAAAACC
TCTTAAACTTTATTATGCCTTTATTTATTTTTGTTTAGATGAAATTTTTC
GGAATGCCTTTAAGACAATCGATAACGGGAGTGCCAGCTGGAAGTAGCAG
TTTATAACCAATGAGTCAATTGACATTAAAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009178XLOC_009178Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016439-exon-sc0000237-1575043694:396746..396813TCONS_00016439-exon-sc0000237-1575043694:396746..396813Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1575043694:394245..394360TCONS_00016439-exon-sc0000237-1575043694:394245..394360Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1575043694:393945..394046TCONS_00016439-exon-sc0000237-1575043694:393945..394046Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1575043694:393664..393724TCONS_00016439-exon-sc0000237-1575043694:393664..393724Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1575043694:393380..393475TCONS_00016439-exon-sc0000237-1575043694:393380..393475Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1510915933:396746..396813TCONS_00016439-exon-sc0000237-1510915933:396746..396813Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1510915933:394245..394360TCONS_00016439-exon-sc0000237-1510915933:394245..394360Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1510915933:393945..394046TCONS_00016439-exon-sc0000237-1510915933:393945..394046Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1510915933:393664..393724TCONS_00016439-exon-sc0000237-1510915933:393664..393724Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1510915933:393380..393475TCONS_00016439-exon-sc0000237-1510915933:393380..393475Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1491911889:396746..396813TCONS_00016439-exon-sc0000237-1491911889:396746..396813Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1491911889:394245..394360TCONS_00016439-exon-sc0000237-1491911889:394245..394360Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1491911889:393945..394046TCONS_00016439-exon-sc0000237-1491911889:393945..394046Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1491911889:393664..393724TCONS_00016439-exon-sc0000237-1491911889:393664..393724Clytia hemisphaericaexon
TCONS_00016439-exon-sc0000237-1491911889:393380..393475TCONS_00016439-exon-sc0000237-1491911889:393380..393475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:393380..396813 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
143.375	168.193	217.977	231.258	164.895	132.351	233.051	209.321	283.963	246.29	152.59	185.42	100.425	82.5258	128.722	137.347	146.214	129.807	78.6039	172.897	84.575	75.7791	101.047	106.388	118.748	120.264	149.987	92.921	121.7	100.357
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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