|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016466 ID=TCONS_00016466|Name=TCONS_00016466|organism=Clytia hemisphaerica|type=transcript|length=1595bp
GCATGTTCAAAGgcgaagaagaaaagaaaaagtaacGAGTGCCAAGCACA
GCACCTTTACAACGCAGACAAATATTGGTGGAACGCTCACAGAACACACC
GTCCACTACCAACCTTCGTCGTAAAGAAATTCGAAGACGTTCGATTGAAA
TGTTCTCCGATTCATCCGATTCAGAAACCTCTTTTTTCGACGATAGCGAT
GACAATGATGATGTCACCGTCTTTTTCGGAAAACACGGCAACAAATTTCA
AAACGTTCGTGATGGTGATCGGGAAAACCTCAGGCCGACCAACACCGACG
ACGGGAACTGTCGTTACCGACATGAAAAGACGAAATCATGTGAAATACTT
CTCTCACCAAAAATGCAACGAAGAGCGGGattgaaaaacagcaaaacaac
ctccaattttcaaaaaagtgcgTCAATGGACTTTGGCTTTCATCCACCCA
CCAGGAATTTCTCAGTACCAAACCTCTCATCAGTGCGAAAGACTTCCGat
gaaaacagatcaaaatgtGGAGAAGAAGACAGATATTTATCGAGTCCTCG
ATTAAAACGAAAACAAATGGACATAACAAAATCTGCAGCCTTTAAAGAGA
TCTACGCACACAACTTACGACTCTACAGTGCAGTATTAGCTAAGcaAGTT
GCATCAACGGGACAAATCGGTCGTGAGATGAACCAAATCAGAAGGAATAA
GCTGAAAGAACGAGttctcaacaacaacaacaacaacaatataGAAAACA
ACAATGACAACAATACGAACAAAGAAATGTACAAAAGATCGAACAGTTTC
GCACATTCAGTGGGCGCGGAGGAGAGCGGACGACTGCAACGAAGCAAACG
ATCTAACAGTGCCAGTAGTGAACAGATTCGAAAACAACTACAAGATGCAG
CATTCGTTGCCATGCCAATCCCTCTGTCGAACAGTGATGACGACATCAGA
CCCAGTGAAGAAGAATGCTGTTTAAGAGGAAGATCACAATCTCTGGTCCC
TTCAAGAGATATTTTAAAGAGGATGTCAGCCAAAAAGACAACCGATGAAA
ATCAAAACGAGatttgtgacgtcatcagtgAACTACCTCAACCTACACAA
CCACAACGCAGAAATCAAAGAAGTCAAGCAGCCTTCAAACGTAAAGAACA
ACTCAAAGAAAAACTGGACTCTTTTGATTTGGTCTTGGGAAAGACTTCCA
ACTTCCTTGCCAAAGTGAAGACTGTCAGGAAGGAATGAATCTTCTGAAGG
AAGGATTTCTTTGCTGGGCGAAGAAGGAAGGAAAGTAATATAAGATAAAA
TACCTACGCCaaatatatcataaaatataaaatttctaaagaaaaatatt
gctattcttaacatttttactgcaataaattattttttacgtgttatgtt
atgagaaattatGAAGATTGTACATATTTTAAGGTTAATATTAGAAAGTT
TTCTGTGAAAACAAACTTATTTTATagaaatgatcaaatcaaacacattc
ttgaatttaattttgactccctaaaaaatgcaataaataaacaaatcaaG
ATGAGATTCTTTCCATTTCAATATTTCCTTTAGGCTTTATGTGAA Run BLAST on NCBI protein sequence of Putative cnidarian restricted protein >TCONS_00016466-protein ID=TCONS_00016466-protein|Name=Putative cnidarian restricted protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
MFSDSSDSETSFFDDSDDNDDVTVFFGKHGNKFQNVRDGDRENLRPTNTD
DGNCRYRHEKTKSCEILLSPKMQRRAGLKNSKTTSNFQKSASMDFGFHPP
TRNFSVPNLSSVRKTSDENRSKCGEEDRYLSSPRLKRKQMDITKSAAFKE
IYAHNLRLYSAVLAKQVASTGQIGREMNQIRRNKLKERVLNNNNNNNIEN
NNDNNTNKEMYKRSNSFAHSVGAEESGRLQRSKRSNSASSEQIRKQLQDA
AFVAMPIPLSNSDDDIRPSEEECCLRGRSQSLVPSRDILKRMSAKKTTDE
NQNEICDVISELPQPTQPQRRNQRSQAAFKRKEQLKEKLDSFDLVLGKTS
NFLAKVKTVRKE Run BLAST on NCBI transcript from alignment at sc0000240:110076..112806+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016466 ID=TCONS_00016466|Name=TCONS_00016466|organism=Clytia hemisphaerica|type=transcript|length=2731bp|location=Sequence derived from alignment at sc0000240:110076..112806+ (Clytia hemisphaerica)
GCATGTTCAAAGgcgaagaagaaaagaaaaagtaacGAGGTAGTTATTCA
AATTTGTTCAACAATAATTACGTGTGCAATTACAATCATCTGCTTGGTAC
AAACGAACCGTTTGATTTATGACAAAAGAGAAATAGGGTTTCATGTACGT
TGAACAGCTTACGGGAGAACAAGGGTCAGTAGGGCTAACCGTTTCTACGA
AACTGGGCCAAGAAAAATAACCATTGCACCAAGACATTACAAAATAGTGC
ATAGATTGAGGTTAATTGCTCCTCTGCACGAAGGTTAATCCCAATTGAAA
AGGTTGAAGTGATTAAGAAAGAATTCAAGCAACGTACGTGCAAGCGATTT
ACTTGGACAGGACAAATACCTCGACTGACGGTACTAATTACACCTCATTT
GTGAAAgacaaaagaaaagataaatggTTACTCGCTATTATGAGAAGTTC
CGCTACAATAACTGATatttctttctccttttcttTTGTCTAATGTCATT
TAATGGGTTTGTGACAATAAAAGGGAGTAATTAAATTGGTTACTGTTTAT
ATGAGGTCGATATCTGCTTTGTGAAAGCATCAGACAGAAAAAGCAAACGT
GCTTAAGCAACAGATGAGTTATATTCACTAGAGATTAGAACATTTTTTTA
CACAACATTTCATACATAGcaataacaaaacaaaatggttaAAGTTACTT
CATCAACCATTGATATTTATACAGTGCCAAGCACAGCACCTTTACAACGC
AGACAAATATTGGTGGAACGCTCACAGAACACACCGTCCACTACCAACCT
TCGTCGTAAAGAAATTCGAAGACGTTCGATTGAAATGTTCTCCGATTCAT
CCGATTCAGAAACCTCTTTTTTCGACGATAGCGATGACAATGATGATGTC
ACCGTCTTTTTCGGAAAACACGGCAACAAATTTCAAAACGTTCGTGATGG
TGATCGGGAAAACCTCAGGCCGACCAACACCGACGACGGGAACTGTCGTT
ACCGACATGAAAAGACGAAATCATGTGAAATACTTCTCTCACCAAAAATG
CAACGAAGAGCGGGattgaaaaacagcaaaacaacctccaattttcaaaa
aagtgcgTCAATGGACTTTGGCTTTCATCCACCCACCAGGAATTTCTCAG
TACCAAACCTCTCATCAGTGCGAAAGACTTCCGatgaaaacagatcaaaa
tgtGGAGAAGAAGACAGATATTTATCGAGTCCTCGATTAAAACGAAAACA
AATGGACATAACAAAATCTGCAGCCTTTAAAGAGATCTACGCACACAACT
TACGACTCTACAGTGCAGTATTAGCTAAGGTAAATAATCCCCAAATATTA
TTGCTGATTATCctaaatagaaatagaaattcttttcttttccgTTAACT
CAGTTTGAAATCtaatgaattaaaattgaatacTTTCTAATCATCCTTAC
GGGTAATTATGCGTTTCGTAACAAAAAAGGGGATCTAATGAGGtctttga
tttgttttatttttagcaAGTTGCATCAACGGGACAAATCGGTCGTGAGA
TGAACCAAATCAGAAGGAATAAGCTGAAAGAACGAGttctcaacaacaac
aacaacaacaatataGAAAACAACAATGACAACAATACGAACAAAGAAAT
GTACAAAAGATCGAACAGTTTCGCACATTCAGTGGGCGCGGAGGAGAGCG
GACGACTGCAACGAAGCAAACGATCTAACAGTGCCAGTAGTGAACAGATT
CGAAAACAACTACAAGATGCAGCATTCGTTGCCATGCCAATCCCTCTGTC
GAACAGTGATGACGACATCAGACCCAGTGAAGAAGAATGCTGTTTAAGAG
GAAGATCACAATCTCTGGTCCCTTCAAGAGATATTTTAAAGAGGGTAAGT
GTTTCTACCATTACATATTCTATTGACTCATTTTCAGTTCTGCTTTTCTC
TGAAGAAGAAGGCGAGGAATGCTAACGAGGTGAATTTCTCGAACAAACAG
ACATATCAAGGACTTCCAAACGAGGGAAATATGTTTGACAGCAAATGACC
TGACGTCATTGCTACTCAGAAAGTTAATCTATTTTTTATTGAAGTTGGAA
GTATATTTAGGAAGTTGGAATTGGTTTCTTACATGCTTTCCTTTCTCTAT
TTGTTTAGATGTCAGCCAAAAAGACAACCGATGAAAATCAAAACGAGatt
tgtgacgtcatcagtgAACTACCTCAACCTACACAACCACAACGCAGAAA
TCAAAGAAGTCAAGCAGCCTTCAAACGTAAAGAACAACTCAAAGAAAAAC
TGGACTCTTTTGATTTGGTCTTGGGAAAGACTTCCAACTTCCTTGCCAAA
GTGAAGACTGTCAGGAAGGAATGAATCTTCTGAAGGAAGGATTTCTTTGC
TGGGCGAAGAAGGAAGGAAAGTAATATAAGATAAAATACCTACGCCaaat
atatcataaaatataaaatttctaaagaaaaatattgctattcttaacat
ttttactgcaataaattattttttacgtgttatgttatgagaaattatGA
AGATTGTACATATTTTAAGGTTAATATTAGAAAGTTTTCTGTGAAAACAA
ACTTATTTTATagaaatgatcaaatcaaacacattcttgaatttaatttt
gactccctaaaaaatgcaataaataaacaaatcaaGATGAGATTCTTTCC
ATTTCAATATTTCCTTTAGGCTTTATGTGAA Coding sequence (CDS) from alignment at sc0000240:110076..112806+ >TCONS_00016466 ID=TCONS_00016466|Name=TCONS_00016466|organism=Clytia hemisphaerica|type=CDS|length=3267bp|location=Sequence derived from alignment at sc0000240:110076..112806+ (Clytia hemisphaerica)
ATGTTCTCCGATTCATCCGATTCAGAAACCTCTTTTTTCGACGATAGCGA
TGACAATGATGATGTCACCGTCTTTTTCGGAAAACACGGCAACAAATTTC
AAAACGTTCGTGATGGTGATCGGGAAAACCTCAGGCCGACCAACACCGAC
GACGGGAACTGTCGTTACCGACATGAAAAGACGAAATCATGTGAAATACT
TCTCTCACCAAAAATGCAACGAAGAGCGGGattgaaaaacagcaaaacaa
cctccaattttcaaaaaagtgcgTCAATGGACTTTGGCTTTCATCCACCC
ACCAGGAATTTCTCAGTACCAAACCTCTCATCAGTGCGAAAGACTTCCGa
tgaaaacagatcaaaatgtGGAGAAGAAGACAGATATTTATCGAGTCCTC
GATTAAAACGAAAACAAATGGACATAACAAAATCTGCAGCCTTTAAAGAG
ATCTACGCACACAACTTACGACTCTACAGTGCAGTATTAGCTAAGcaAGT
TGCATCAACGGGACAAATCGGTCGTGAGATGAACCAAATCAGAAGGAATA
AGCTGAAAGAACGAGttctcaacaacaacaacaacaacaatataGAAAAC
AACAATGACAACAATACGAACAAAGAAATGTACAAAAGATCGAACAGTTT
CGCACATTCAGTGGGCGCGGAGGAGAGCGGACGACTGCAACGAAGCAAAC
GATCTAACAGTGCCAGTAGTGAACAGATTCGAAAACAACTACAAGATGCA
GCATTCGTTGCCATGCCAATCCCTCTGTCGAACAGTGATGACGACATCAG
ACCCAGTGAAGAAGAATGCTGTTTAAGAGGAAGATCACAATCTCTGGTCC
CTTCAAGAGATATTTTAAAGAGGATGTCAGCCAAAAAGACAACCGATGAA
AATCAAAACGAGatttgtgacgtcatcagtgAACTACCTCAACCTACACA
ACCACAACGCAGAAATCAAAGAAGTCAAGCAGCCTTCAAACGTAAAGAAC
AACTCAAAGAAAAACTGGACTCTTTTGATTTGGTCTTGGGAAAGACTTCC
AACTTCCTTGCCAAAGTGAAGACTGTCAGGAAGGAATGAATGTTCTCCGA
TTCATCCGATTCAGAAACCTCTTTTTTCGACGATAGCGATGACAATGATG
ATGTCACCGTCTTTTTCGGAAAACACGGCAACAAATTTCAAAACGTTCGT
GATGGTGATCGGGAAAACCTCAGGCCGACCAACACCGACGACGGGAACTG
TCGTTACCGACATGAAAAGACGAAATCATGTGAAATACTTCTCTCACCAA
AAATGCAACGAAGAGCGGGattgaaaaacagcaaaacaacctccaatttt
caaaaaagtgcgTCAATGGACTTTGGCTTTCATCCACCCACCAGGAATTT
CTCAGTACCAAACCTCTCATCAGTGCGAAAGACTTCCGatgaaaacagat
caaaatgtGGAGAAGAAGACAGATATTTATCGAGTCCTCGATTAAAACGA
AAACAAATGGACATAACAAAATCTGCAGCCTTTAAAGAGATCTACGCACA
CAACTTACGACTCTACAGTGCAGTATTAGCTAAGcaAGTTGCATCAACGG
GACAAATCGGTCGTGAGATGAACCAAATCAGAAGGAATAAGCTGAAAGAA
CGAGttctcaacaacaacaacaacaacaatataGAAAACAACAATGACAA
CAATACGAACAAAGAAATGTACAAAAGATCGAACAGTTTCGCACATTCAG
TGGGCGCGGAGGAGAGCGGACGACTGCAACGAAGCAAACGATCTAACAGT
GCCAGTAGTGAACAGATTCGAAAACAACTACAAGATGCAGCATTCGTTGC
CATGCCAATCCCTCTGTCGAACAGTGATGACGACATCAGACCCAGTGAAG
AAGAATGCTGTTTAAGAGGAAGATCACAATCTCTGGTCCCTTCAAGAGAT
ATTTTAAAGAGGATGTCAGCCAAAAAGACAACCGATGAAAATCAAAACGA
GatttgtgacgtcatcagtgAACTACCTCAACCTACACAACCACAACGCA
GAAATCAAAGAAGTCAAGCAGCCTTCAAACGTAAAGAACAACTCAAAGAA
AAACTGGACTCTTTTGATTTGGTCTTGGGAAAGACTTCCAACTTCCTTGC
CAAAGTGAAGACTGTCAGGAAGGAATGAATGTTCTCCGATTCATCCGATT
CAGAAACCTCTTTTTTCGACGATAGCGATGACAATGATGATGTCACCGTC
TTTTTCGGAAAACACGGCAACAAATTTCAAAACGTTCGTGATGGTGATCG
GGAAAACCTCAGGCCGACCAACACCGACGACGGGAACTGTCGTTACCGAC
ATGAAAAGACGAAATCATGTGAAATACTTCTCTCACCAAAAATGCAACGA
AGAGCGGGattgaaaaacagcaaaacaacctccaattttcaaaaaagtgc
gTCAATGGACTTTGGCTTTCATCCACCCACCAGGAATTTCTCAGTACCAA
ACCTCTCATCAGTGCGAAAGACTTCCGatgaaaacagatcaaaatgtGGA
GAAGAAGACAGATATTTATCGAGTCCTCGATTAAAACGAAAACAAATGGA
CATAACAAAATCTGCAGCCTTTAAAGAGATCTACGCACACAACTTACGAC
TCTACAGTGCAGTATTAGCTAAGcaAGTTGCATCAACGGGACAAATCGGT
CGTGAGATGAACCAAATCAGAAGGAATAAGCTGAAAGAACGAGttctcaa
caacaacaacaacaacaatataGAAAACAACAATGACAACAATACGAACA
AAGAAATGTACAAAAGATCGAACAGTTTCGCACATTCAGTGGGCGCGGAG
GAGAGCGGACGACTGCAACGAAGCAAACGATCTAACAGTGCCAGTAGTGA
ACAGATTCGAAAACAACTACAAGATGCAGCATTCGTTGCCATGCCAATCC
CTCTGTCGAACAGTGATGACGACATCAGACCCAGTGAAGAAGAATGCTGT
TTAAGAGGAAGATCACAATCTCTGGTCCCTTCAAGAGATATTTTAAAGAG
GATGTCAGCCAAAAAGACAACCGATGAAAATCAAAACGAGatttgtgacg
tcatcagtgAACTACCTCAACCTACACAACCACAACGCAGAAATCAAAGA
AGTCAAGCAGCCTTCAAACGTAAAGAACAACTCAAAGAAAAACTGGACTC
TTTTGATTTGGTCTTGGGAAAGACTTCCAACTTCCTTGCCAAAGTGAAGA
CTGTCAGGAAGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016466-exon-sc0000240-1491911889:110076..110114 | TCONS_00016466-exon-sc0000240-1491911889:110076..110114 | Clytia hemisphaerica | exon |
| TCONS_00016466-exon-sc0000240-1510915933:110076..110114 | TCONS_00016466-exon-sc0000240-1510915933:110076..110114 | Clytia hemisphaerica | exon |
| TCONS_00016466-exon-sc0000240-1575043694:110076..110114 | TCONS_00016466-exon-sc0000240-1575043694:110076..110114 | Clytia hemisphaerica | exon |
| TCONS_00016466-exon-sc0000240-1491911889:110800..111404 | TCONS_00016466-exon-sc0000240-1491911889:110800..111404 | Clytia hemisphaerica | exon |
| TCONS_00016466-exon-sc0000240-1510915933:110800..111404 | TCONS_00016466-exon-sc0000240-1510915933:110800..111404 | Clytia hemisphaerica | exon |
| TCONS_00016466-exon-sc0000240-1575043694:110800..111404 | TCONS_00016466-exon-sc0000240-1575043694:110800..111404 | Clytia hemisphaerica | exon |
| TCONS_00016466-exon-sc0000240-1491911889:111592..111969 | TCONS_00016466-exon-sc0000240-1491911889:111592..111969 | Clytia hemisphaerica | exon |
| TCONS_00016466-exon-sc0000240-1510915933:111592..111969 | TCONS_00016466-exon-sc0000240-1510915933:111592..111969 | Clytia hemisphaerica | exon |
| TCONS_00016466-exon-sc0000240-1575043694:111592..111969 | TCONS_00016466-exon-sc0000240-1575043694:111592..111969 | Clytia hemisphaerica | exon |
| TCONS_00016466-exon-sc0000240-1491911889:112234..112806 | TCONS_00016466-exon-sc0000240-1491911889:112234..112806 | Clytia hemisphaerica | exon |
| TCONS_00016466-exon-sc0000240-1510915933:112234..112806 | TCONS_00016466-exon-sc0000240-1510915933:112234..112806 | Clytia hemisphaerica | exon |
| TCONS_00016466-exon-sc0000240-1575043694:112234..112806 | TCONS_00016466-exon-sc0000240-1575043694:112234..112806 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000240 | supercontig | sc0000240:110076..112806 + |
Blast
The following BLAST results are available for this feature:
|
