TCONS_00016474 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00016474
Unique Name	TCONS_00016474
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1760

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000240:203401..209140+
coding sequence from alignment at sc0000240:203401..209140+

transcript sequence

>TCONS_00016474 ID=TCONS_00016474|Name=TCONS_00016474|organism=Clytia hemisphaerica|type=transcript|length=1760bp
ttatagCAAACTACTAGaattgacaaataaaaaatttggtaACAAACAAT
GTACAGCGATAGTTATGATGAAGATGACGATGCACCATATGatGATGTAC
CAGTCTCCTTGGTACCATGTTCAAATTGTGGTCGAAAATTCAATTCAGAT
AGTTTGGCGCGGCACGAGAATGTTTGCAGCAACCTGAAGCCGCGAAAAGT
TTTCGATTCCAGCAAACAAAGAACTGAAGGTTTGGAGAAGCCGAAAGTCA
CAAGATCAGACCCTCCAAAGAAGgcacCGAGGAAGAAAGATTGGCGAAGA
CAACATGATGAATTTATTAAGAACATTCGAGCGGCACGCGGTGTGAAAAA
GGCTCTCGAGACGGGTGGTGAATTACCGCCTCCGCCCGAACCCTCTTACA
ACCCTGACTATGTACAGTGTCAACACTGTAACAGAAGGTTCAACGAAAGT
GCAGCTGAAAGACACATCAAATTCTGCAAGGAACAAAAATCACGCCTTCC
AAAAGCTCCCTCAGACTCAAAGTTTTCACAGAAATCAGAGAAACAGAAAA
TCAGAACACAGtaCAGACCACCGGTTCCAGGACAGAAGAAGAGTAGCACG
TCATCACCTGCCAAACCTCGTGGTTCCGCCTCTGACATGCGTTCACCAGC
TGTTAAGAAAGGAAGTGCTACCAAAGTTAAAAAGGttGAAGATGATGAGC
GACCTATCCCACAAACCAATGGACGTTACAATCAGAAAGATTATACAGAT
TCCCCCTCCACTGCTAAAAGTAAACACAACAAAAATACCGATCCAGATTG
GATGGTAGACTTGAAACGAGGAAGTTCCGCCAAGAAAACGTCCGCAAAAA
GTCAACGCAGTGGCCATAACCTCAACGATAACGATTCTGGTGTCGACATT
AACGAAAATAACGATCGAAGGAGGAGAACTGCTGAACGCGAAGCAGATCT
CTTCGGTCAGAAGAAAGACCGACATCCAAGTGCTGGTCGTCGTGTCACTT
CATCAAACAAAGGTTCATCCAACAAGCTGGCCAATTTTTGCCATGACTGT
GGAACGAAATATCCGGTGGTGGAAGCCAAATTTTGTTGTGAATGCGGACT
ACGAAGGATGGCCATTACGTGATTATGCATGCCATGTTATCTTTTCTTGC
ACTCTTGAAATCACGCACCTGCATGTCTTGTCGATAACGGACACGTGGTA
CGCTAAACCTTTGGTATTAAGATGAGGGAACTCTTAGGGTTGAAATCAGA
AGGCATTATCACCACTCTAATATAAAGCAAAGTTTTTATATGTTTAATCA
TATAGAAATCAGGGAACCGTTCATGCTTAAAAAATTGCCTATATTCTAAT
GCCGAAGGGCAAATTATTCAGTTCCTGTGTCTAGAGAGACCATTCATTCG
GACAAAAGgtcctttaaaaaattttttttcacccaaattgGAAATTTTTC
GACAAGATGATCTTAgtattctttctttttgaatttttacttcTGAGCTT
TAAAAAGAAGATCTCTCAAATGGTGAAATCCAAAGAAACATTTTTCTAGT
CAATATTCCAGATTGAAAATCAGTACATAGACCATAGACAGAATCGATTA
TTCTTTGACTGGGTGTGTGAATTGTTACACCTAATTAAACGATCTTTTgg
taaaaatagttttttggtgtcacgtaaagtttttttaagaaccatGTAAA
ATGTTTGTATATAAAGTAAtccattttaaataaaatatataattttaatg
TGTAGAAAGA

Run BLAST on NCBI

protein sequence of TCONS_00016474-protein

>TCONS_00016474-protein ID=TCONS_00016474-protein|Name=TCONS_00016474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MYSDSYDEDDDAPYDDVPVSLVPCSNCGRKFNSDSLARHENVCSNLKPRK
VFDSSKQRTEGLEKPKVTRSDPPKKAPRKKDWRRQHDEFIKNIRAARGVK
KALETGGELPPPPEPSYNPDYVQCQHCNRRFNESAAERHIKFCKEQKSRL
PKAPSDSKFSQKSEKQKIRTQYRPPVPGQKKSSTSSPAKPRGSASDMRSP
AVKKGSATKVKKVEDDERPIPQTNGRYNQKDYTDSPSTAKSKHNKNTDPD
WMVDLKRGSSAKKTSAKSQRSGHNLNDNDSGVDINENNDRRRRTAEREAD
LFGQKKDRHPSAGRRVTSSNKGSSNKLANFCHDCGTKYPVVEAKFCCECG
LRRMAIT

Run BLAST on NCBI

transcript from alignment at sc0000240:203401..209140+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00016474 ID=TCONS_00016474|Name=TCONS_00016474|organism=Clytia hemisphaerica|type=transcript|length=5740bp|location=Sequence derived from alignment at sc0000240:203401..209140+ (Clytia hemisphaerica)
ttatagCAAACTACTAGaattgacaaataaaaaatttggtaACAAACAAT
GTACAGCGATAGTTATGATGAAGATGACGATGCACCATATGGTATGATGT
TTCAATATatctaaaatttctttttcatttgtttttctttcttggtTTAC
GCTATCCTGCTTGATTTAAAAACTACTAGAATTTTAGACGACATCATTAG
AGTCATTAAAATATATTCCGAAGTGGatgaattgacaaaaataatcttta
aagaTATAAAGATcttgaaaatctttattttttagatGATGTACCAGTCT
CCTTGGTACCATGTTCAAATTGTGGTCGAAAATTCAATTCAGATAGTTTG
GTAAGTCAAAGCGTTAGACGTTATGGTAAGctcaaaaagtttttaagaaa
taagtGACAGCTATTTTCAACTCTAATAGAACGACGCTATATGCAAAGAT
ATAAATTGATATAAGATTGATGATTTAATAGGGAATGAGACTGAAATAAC
AGATAGCAAAAGGAGAATTGCAATCGATCGTACTCTTTCTGACATTGACT
CATCCATACGATATCttttccaaaattcaaatcatcTTTTTAATTCAAAC
TTCCCTCGGTTCATCTCAGGCGCGGCACGAGAATGTTTGCAGCAACCTGA
AGCCGCGAAAAGTTTTCGATTCCAGCAAACAAAGAACTGAAGGTTTGGAG
AAGCCGAAAGTCACAAGATCAGACCCTCCAAAGAAGGTTTACATGAAAAT
TAATTGTATCATTTGAACAAAATATCTGATAAATGACGCATGGAATATTT
CTTATCAActactttaagggaagaaactGTCGTGGAACGAAACTTTTGGG
ATTTTTGTAAATGTTAGGCTTATTTACAAACATAAATTTCTGAGCAACTA
GCGTCTGCTTATTGAATTATAATGTATGTTCGACAAGAAAGCAATAAGTA
TGACGTTTCTGGTTTTTCGATGTTGCTAATTCCAATACTATAATAAATTT
CTGACCTTGAATCGAGGccgttttattttgttatgaGCTTTCCTTTTAAA
GATTGATGCTTGTTTGATggtatttttttgttgaaattgaagctttctgt
ttttttttcaggcacCGAGGAAGAAAGATTGGCGAAGACAACATGATGAA
TTTATTAAGAACATTCGAGCGGCACGCGGTGTGAAAAAGGCTCTCGAGAC
GGGTGGTGAATTACCGCCTCCGCCCGAACCCTCTTACAACCCTGACTATG
TACAGTGTCAACACTGTAACAGAAGGTTCAACGAAAGTGCAGCTGAAAGA
CACATCAAATTCTGCAAGGAACAAAAATCACGCCTTCCAAAAGCTCCCTC
AGACTCAAAGTTTTCACAGAAATCAGAGAAACAGAAAATCAGAACACAGG
tataattttagtttttatttcagtttttctACTTTAAAATGACATTGATT
GCGCCCTGTACACCCTCTTCATATCATCCAACTTTCAGGAACAATGATTG
TTTGTCTTCTTTTTCACGAATTTCGCTCTTTGTGTTACAATGAAGTGAAT
GCAGTCGCTATGATGTtctcttctgaccagccaccagaaccgttggagtC
TTATTTTCTGAAACCTTATGTCCATTAATCAATGAATTtgatttctcttt
tttagtaCAGACCACCGGTTCCAGGACAGAAGAAGAGTAGCACGTCATCA
CCTGCCAAACCTCGTGGTTCCGCCTCTGACAGTATGTCTTTTTTCATCAT
TCTAATTCTCttttgttttacaaaatttgttaaaatcttAATATAAATTT
AAGTATTACAAGCGGGATAAAAAATATTGTATAAACTTTTAGTTCGCACG
AACTAGTCATTCCCTGCAATAACTTTTTGCTTTTCAATCTTCTCTTTTAA
GTGCGTTCACCAGCTGTTAAGAAAGGAAGTGCTACCAAAGTTAAAAAGGG
TAAGTAGTATTCTTTTGACCGACCCGACTGACTTGACAGCAAAAATAAGT
AAccacagtggagtctccataactcgaacacgcacgggcaacacaaattg
ttcgagttaaggaaatttcgaattatggagTAATGTTTATAAAGCTTTGT
TTACTCGTGAAGGTAAttaagatatagatggagagaaaacgtctcggtaa
tgacctaaatgatcgttgaaatcttttataaatctattcaaactcaaagc
ggcttttctttgatgtaccatcattggaaacaaaaaaatccgaaatgtaa
attcataagaacagaagtgagaatgttatcctgattgaaataaacatttt
acagtatgtggcccccaaaacggcgatcaaatttgaaatttctctcaaat
ctagaggaaaagagattttacaaaaatttttgctgcatgaaaacctttaa
catctctactttatttcctggaagttctttttcaaaattttcaatttcaa
caatatttttcaatcccTCAAAGAtgggtagcttttttctaatggccccc
aaaacggaggtttgaaattttagcgatttctcaagatatctttaagatat
gaataccaaattttgaccatagttttgaaatatgatttagagggttttgg
gcataaatttatttgataaaatctttacagtatacccctggttgtcaaaa
tgcaggtttggggcccctaaaacggaggtgtagttaaaatcaaattatta
agccgagtggtaatagggggggaaactatgaacatatttgtgttttccct
taaatttacgacccgatggatgtaaaatttatgatttttaggaaatattt
caagattttcgatattgcaaagtccaaattgaaaatttagaaattttcaa
aatgacaattttgatttaccaACGTCttgatcaagtttttgaaaacaaat
ctcttttgaaaatagttccattcatgtatggaataagctgtgaaaatttt
agaaaaaaatcttaactgaaactgaaaatattaagctttaaagatatttt
tctcctatattttgccgtttttgctgattcagcgaaaaattttatgtata
atgttaattttttgctaTAAACTACTAACTCAaagtgataggaatagaat
tccaagattttttgctttttctcatatttagaattttcggttttgtcaat
gNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNATTCTAGGGCTCCAagatactggttgaccttcaagatgctat
atcttttacccatcctctaaagtcacagatgtatttgcattttctgaaca
gcattaggtgtagaaagtttcctataccccgttttcataacttattttca
atatccaagaaGCTAGaatgagttatatgcaatttttatctaattttggt
gttaaaatatttcctttagacgcaaatatgttattttgaatccgtctcaa
accagcaaaaacatgctcatttttaagtataaccatcattctttcaaaag
aaacaaaaatcgtttaattctgataaatctacaagtcagaatcttcatgt
taatgaaaacctccgttttgggggccgtctccgttttgggggccatatac
tgtatgcagaaagttcttgttcaaacgcgatacaaaataattttctcaaa
gtaaggttacaatagttctatgatttcatatcCATGTATTTTTGGGCGAA
CACTGTGcaaattttgagagtttcagcacatgttccttgaaaatttcttc
atatAAATCTTTACGTCTGGAAGGGAGGGGactttcaaattctgatggat
gattaattaaaatttatcgatgattttatgagaggggacccttagaaata
taggattttgtgcttgttacggcaagctttttcttattttgatcaacaaa
gctattatctcacaatagagttttttattaacttaaatattcccatgagT
GCGCACAAAATTGATCACTTTTTCCACTGCAATCAAGGAgccgtttgctt
ccgatgattaggaacaatgaaataaaaggagttcatttcttattacctcc
atggtttACTGAAGGGTCCGAgaaattgttcgagttaaggagacatttga
gctATAGAGGTTTGGGTTGAAGAGGTTCTACTGTGTATGTTATACCATGC
TATATTCTGACGAAATAGTCAAAGTCTAGATCGAAGACTTTCTTGCGAAC
GATATGTcgattcattttttacaaagttggttgttttgttttgtttagtt
GAAGATGATGAGCGACCTATCCCACAAACCAATGGACGTTACAATCAGAA
AGATTATACAGATTCCCCCTCCACTGCTAAAAGTAAACACAACAAAAATA
CGTAAGAAGCCCTAAGCTATTTCATTGAGACTTCCGGTTCGCGGTGCCTG
CATCGTGTTGATAATAAACGTGTTTTCAATACTTATTTCTGCCTTTTCTG
CCGCGCTTTTCCGATTGGGTAACTTTAGTCTTAAATTTGGTGACTCACAg
ctaaatgaaataaattttctCTAACAAAACCTTTATTTGAAGAATGATTT
TTGAAGTATAATGATATTCAAATCATGAAAGTTTTCTCACCAAGTCAAGT
TCTACTAAATGCTCCAGAATGCTCGGTTCTTTGCTGTTTCTAAAAAGGGT
AACTTGTTTGATTCTAGCGTTCCCATCATTACAAgaacatatttcaaaaa
aatgtctttctcTTTTAGCGATCCAGATTGGATGGTAGACTTGAAACGAG
GAAGTTCCGCCAAGAAAACGTCCGCAAAAAGTCAACGCAGTGGCCATAAC
CTCAACGATAACGATTCTGGTGTCGACATTAACGAAAATAACGATCGAAG
GAGGAGAACTGCTGAACGCGAAGCAGATCTCTTCGGTCAGAAGAAAGACC
GACATCCAAGTGCTGGTCGTCGTGTCACTTCATCAAACAAAGGTTCATCC
AACAAGCTGGCCAATTTTTGCCATGACTGTGGAACGAAATATCCGGTGGT
GGAAGCCAAATTTTGTTGTGAATGCGGACTACGAAGGATGGCCATTACGT
GATTATGCATGCCATGTTATCTTTTCTTGCACTCTTGAAATCACGCACCT
GCATGTCTTGTCGATAACGGACACGTGGTACGCTAAACCTTTGGTATTAA
GATGAGGGAACTCTTAGGGTTGAAATCAGAAGGCATTATCACCACTCTAA
TATAAAGCAAAGTTTTTATATGTTTAATCATATAGAAATCAGGGAACCGT
TCATGCTTAAAAAATTGCCTATATTCTAATGCCGAAGGGCAAATTATTCA
GTTCCTGTGTCTAGAGAGACCATTCATTCGGACAAAAGgtcctttaaaaa
attttttttcacccaaattgGAAATTTTTCGACAAGATGATCTTAgtatt
ctttctttttgaatttttacttcTGAGCTTTAAAAAGAAGATCTCTCAAA
TGGTGAAATCCAAAGAAACATTTTTCTAGTCAATATTCCAGATTGAAAAT
CAGTACATAGACCATAGACAGAATCGATTATTCTTTGACTGGGTGTGTGA
ATTGTTACACCTAATTAAACGATCTTTTggtaaaaatagttttttggtgt
cacgtaaagtttttttaagaaccatGTAAAATGTTTGTATATAAAGTAAt
ccattttaaataaaatatataattttaatgTGTAGAAAGA

Coding sequence (CDS) from alignment at sc0000240:203401..209140+

>TCONS_00016474 ID=TCONS_00016474|Name=TCONS_00016474|organism=Clytia hemisphaerica|type=CDS|length=8592bp|location=Sequence derived from alignment at sc0000240:203401..209140+ (Clytia hemisphaerica)
ATGTACAGCGATAGTTATGATGAAGATGACGATGCACCATATGatGATGT
ACCAGTCTCCTTGGTACCATGTTCAAATTGTGGTCGAAAATTCAATTCAG
ATAGTTTGGCGCGGCACGAGAATGTTTGCAGCAACCTGAAGCCGCGAAAA
GTTTTCGATTCCAGCAAACAAAGAACTGAAGGTTTGGAGAAGCCGAAAGT
CACAAGATCAGACCCTCCAAAGAAGgcacCGAGGAAGAAAGATTGGCGAA
GACAACATGATGAATTTATTAAGAACATTCGAGCGGCACGCGGTGTGAAA
AAGGCTCTCGAGACGGGTGGTGAATTACCGCCTCCGCCCGAACCCTCTTA
CAACCCTGACTATGTACAGTGTCAACACTGTAACAGAAGGTTCAACGAAA
GTGCAGCTGAAAGACACATCAAATTCTGCAAGGAACAAAAATCACGCCTT
CCAAAAGCTCCCTCAGACTCAAAGTTTTCACAGAAATCAGAGAAACAGAA
AATCAGAACACAGtaCAGACCACCGGTTCCAGGACAGAAGAAGAGTAGCA
CGTCATCACCTGCCAAACCTCGTGGTTCCGCCTCTGACATGCGTTCACCA
GCTGTTAAGAAAGGAAGTGCTACCAAAGTTAAAAAGGttGAAGATGATGA
GCGACCTATCCCACAAACCAATGGACGTTACAATCAGAAAGATTATACAG
ATTCCCCCTCCACTGCTAAAAGTAAACACAACAAAAATACCGATCCAGAT
TGGATGGTAGACTTGAAACGAGGAAGTTCCGCCAAGAAAACGTCCGCAAA
AAGTCAACGCAGTGGCCATAACCTCAACGATAACGATTCTGGTGTCGACA
TTAACGAAAATAACGATCGAAGGAGGAGAACTGCTGAACGCGAAGCAGAT
CTCTTCGGTCAGAAGAAAGACCGACATCCAAGTGCTGGTCGTCGTGTCAC
TTCATCAAACAAAGGTTCATCCAACAAGCTGGCCAATTTTTGCCATGACT
GTGGAACGAAATATCCGGTGGTGGAAGCCAAATTTTGTTGTGAATGCGGA
CTACGAAGGATGGCCATTACGTGAATGTACAGCGATAGTTATGATGAAGA
TGACGATGCACCATATGatGATGTACCAGTCTCCTTGGTACCATGTTCAA
ATTGTGGTCGAAAATTCAATTCAGATAGTTTGGCGCGGCACGAGAATGTT
TGCAGCAACCTGAAGCCGCGAAAAGTTTTCGATTCCAGCAAACAAAGAAC
TGAAGGTTTGGAGAAGCCGAAAGTCACAAGATCAGACCCTCCAAAGAAGg
cacCGAGGAAGAAAGATTGGCGAAGACAACATGATGAATTTATTAAGAAC
ATTCGAGCGGCACGCGGTGTGAAAAAGGCTCTCGAGACGGGTGGTGAATT
ACCGCCTCCGCCCGAACCCTCTTACAACCCTGACTATGTACAGTGTCAAC
ACTGTAACAGAAGGTTCAACGAAAGTGCAGCTGAAAGACACATCAAATTC
TGCAAGGAACAAAAATCACGCCTTCCAAAAGCTCCCTCAGACTCAAAGTT
TTCACAGAAATCAGAGAAACAGAAAATCAGAACACAGtaCAGACCACCGG
TTCCAGGACAGAAGAAGAGTAGCACGTCATCACCTGCCAAACCTCGTGGT
TCCGCCTCTGACATGCGTTCACCAGCTGTTAAGAAAGGAAGTGCTACCAA
AGTTAAAAAGGttGAAGATGATGAGCGACCTATCCCACAAACCAATGGAC
GTTACAATCAGAAAGATTATACAGATTCCCCCTCCACTGCTAAAAGTAAA
CACAACAAAAATACCGATCCAGATTGGATGGTAGACTTGAAACGAGGAAG
TTCCGCCAAGAAAACGTCCGCAAAAAGTCAACGCAGTGGCCATAACCTCA
ACGATAACGATTCTGGTGTCGACATTAACGAAAATAACGATCGAAGGAGG
AGAACTGCTGAACGCGAAGCAGATCTCTTCGGTCAGAAGAAAGACCGACA
TCCAAGTGCTGGTCGTCGTGTCACTTCATCAAACAAAGGTTCATCCAACA
AGCTGGCCAATTTTTGCCATGACTGTGGAACGAAATATCCGGTGGTGGAA
GCCAAATTTTGTTGTGAATGCGGACTACGAAGGATGGCCATTACGTGAAT
GTACAGCGATAGTTATGATGAAGATGACGATGCACCATATGatGATGTAC
CAGTCTCCTTGGTACCATGTTCAAATTGTGGTCGAAAATTCAATTCAGAT
AGTTTGGCGCGGCACGAGAATGTTTGCAGCAACCTGAAGCCGCGAAAAGT
TTTCGATTCCAGCAAACAAAGAACTGAAGGTTTGGAGAAGCCGAAAGTCA
CAAGATCAGACCCTCCAAAGAAGgcacCGAGGAAGAAAGATTGGCGAAGA
CAACATGATGAATTTATTAAGAACATTCGAGCGGCACGCGGTGTGAAAAA
GGCTCTCGAGACGGGTGGTGAATTACCGCCTCCGCCCGAACCCTCTTACA
ACCCTGACTATGTACAGTGTCAACACTGTAACAGAAGGTTCAACGAAAGT
GCAGCTGAAAGACACATCAAATTCTGCAAGGAACAAAAATCACGCCTTCC
AAAAGCTCCCTCAGACTCAAAGTTTTCACAGAAATCAGAGAAACAGAAAA
TCAGAACACAGtaCAGACCACCGGTTCCAGGACAGAAGAAGAGTAGCACG
TCATCACCTGCCAAACCTCGTGGTTCCGCCTCTGACATGCGTTCACCAGC
TGTTAAGAAAGGAAGTGCTACCAAAGTTAAAAAGGttGAAGATGATGAGC
GACCTATCCCACAAACCAATGGACGTTACAATCAGAAAGATTATACAGAT
TCCCCCTCCACTGCTAAAAGTAAACACAACAAAAATACCGATCCAGATTG
GATGGTAGACTTGAAACGAGGAAGTTCCGCCAAGAAAACGTCCGCAAAAA
GTCAACGCAGTGGCCATAACCTCAACGATAACGATTCTGGTGTCGACATT
AACGAAAATAACGATCGAAGGAGGAGAACTGCTGAACGCGAAGCAGATCT
CTTCGGTCAGAAGAAAGACCGACATCCAAGTGCTGGTCGTCGTGTCACTT
CATCAAACAAAGGTTCATCCAACAAGCTGGCCAATTTTTGCCATGACTGT
GGAACGAAATATCCGGTGGTGGAAGCCAAATTTTGTTGTGAATGCGGACT
ACGAAGGATGGCCATTACGTGAATGTACAGCGATAGTTATGATGAAGATG
ACGATGCACCATATGatGATGTACCAGTCTCCTTGGTACCATGTTCAAAT
TGTGGTCGAAAATTCAATTCAGATAGTTTGGCGCGGCACGAGAATGTTTG
CAGCAACCTGAAGCCGCGAAAAGTTTTCGATTCCAGCAAACAAAGAACTG
AAGGTTTGGAGAAGCCGAAAGTCACAAGATCAGACCCTCCAAAGAAGgca
cCGAGGAAGAAAGATTGGCGAAGACAACATGATGAATTTATTAAGAACAT
TCGAGCGGCACGCGGTGTGAAAAAGGCTCTCGAGACGGGTGGTGAATTAC
CGCCTCCGCCCGAACCCTCTTACAACCCTGACTATGTACAGTGTCAACAC
TGTAACAGAAGGTTCAACGAAAGTGCAGCTGAAAGACACATCAAATTCTG
CAAGGAACAAAAATCACGCCTTCCAAAAGCTCCCTCAGACTCAAAGTTTT
CACAGAAATCAGAGAAACAGAAAATCAGAACACAGtaCAGACCACCGGTT
CCAGGACAGAAGAAGAGTAGCACGTCATCACCTGCCAAACCTCGTGGTTC
CGCCTCTGACATGCGTTCACCAGCTGTTAAGAAAGGAAGTGCTACCAAAG
TTAAAAAGGttGAAGATGATGAGCGACCTATCCCACAAACCAATGGACGT
TACAATCAGAAAGATTATACAGATTCCCCCTCCACTGCTAAAAGTAAACA
CAACAAAAATACCGATCCAGATTGGATGGTAGACTTGAAACGAGGAAGTT
CCGCCAAGAAAACGTCCGCAAAAAGTCAACGCAGTGGCCATAACCTCAAC
GATAACGATTCTGGTGTCGACATTAACGAAAATAACGATCGAAGGAGGAG
AACTGCTGAACGCGAAGCAGATCTCTTCGGTCAGAAGAAAGACCGACATC
CAAGTGCTGGTCGTCGTGTCACTTCATCAAACAAAGGTTCATCCAACAAG
CTGGCCAATTTTTGCCATGACTGTGGAACGAAATATCCGGTGGTGGAAGC
CAAATTTTGTTGTGAATGCGGACTACGAAGGATGGCCATTACGTGAATGT
ACAGCGATAGTTATGATGAAGATGACGATGCACCATATGatGATGTACCA
GTCTCCTTGGTACCATGTTCAAATTGTGGTCGAAAATTCAATTCAGATAG
TTTGGCGCGGCACGAGAATGTTTGCAGCAACCTGAAGCCGCGAAAAGTTT
TCGATTCCAGCAAACAAAGAACTGAAGGTTTGGAGAAGCCGAAAGTCACA
AGATCAGACCCTCCAAAGAAGgcacCGAGGAAGAAAGATTGGCGAAGACA
ACATGATGAATTTATTAAGAACATTCGAGCGGCACGCGGTGTGAAAAAGG
CTCTCGAGACGGGTGGTGAATTACCGCCTCCGCCCGAACCCTCTTACAAC
CCTGACTATGTACAGTGTCAACACTGTAACAGAAGGTTCAACGAAAGTGC
AGCTGAAAGACACATCAAATTCTGCAAGGAACAAAAATCACGCCTTCCAA
AAGCTCCCTCAGACTCAAAGTTTTCACAGAAATCAGAGAAACAGAAAATC
AGAACACAGtaCAGACCACCGGTTCCAGGACAGAAGAAGAGTAGCACGTC
ATCACCTGCCAAACCTCGTGGTTCCGCCTCTGACATGCGTTCACCAGCTG
TTAAGAAAGGAAGTGCTACCAAAGTTAAAAAGGttGAAGATGATGAGCGA
CCTATCCCACAAACCAATGGACGTTACAATCAGAAAGATTATACAGATTC
CCCCTCCACTGCTAAAAGTAAACACAACAAAAATACCGATCCAGATTGGA
TGGTAGACTTGAAACGAGGAAGTTCCGCCAAGAAAACGTCCGCAAAAAGT
CAACGCAGTGGCCATAACCTCAACGATAACGATTCTGGTGTCGACATTAA
CGAAAATAACGATCGAAGGAGGAGAACTGCTGAACGCGAAGCAGATCTCT
TCGGTCAGAAGAAAGACCGACATCCAAGTGCTGGTCGTCGTGTCACTTCA
TCAAACAAAGGTTCATCCAACAAGCTGGCCAATTTTTGCCATGACTGTGG
AACGAAATATCCGGTGGTGGAAGCCAAATTTTGTTGTGAATGCGGACTAC
GAAGGATGGCCATTACGTGAATGTACAGCGATAGTTATGATGAAGATGAC
GATGCACCATATGatGATGTACCAGTCTCCTTGGTACCATGTTCAAATTG
TGGTCGAAAATTCAATTCAGATAGTTTGGCGCGGCACGAGAATGTTTGCA
GCAACCTGAAGCCGCGAAAAGTTTTCGATTCCAGCAAACAAAGAACTGAA
GGTTTGGAGAAGCCGAAAGTCACAAGATCAGACCCTCCAAAGAAGgcacC
GAGGAAGAAAGATTGGCGAAGACAACATGATGAATTTATTAAGAACATTC
GAGCGGCACGCGGTGTGAAAAAGGCTCTCGAGACGGGTGGTGAATTACCG
CCTCCGCCCGAACCCTCTTACAACCCTGACTATGTACAGTGTCAACACTG
TAACAGAAGGTTCAACGAAAGTGCAGCTGAAAGACACATCAAATTCTGCA
AGGAACAAAAATCACGCCTTCCAAAAGCTCCCTCAGACTCAAAGTTTTCA
CAGAAATCAGAGAAACAGAAAATCAGAACACAGtaCAGACCACCGGTTCC
AGGACAGAAGAAGAGTAGCACGTCATCACCTGCCAAACCTCGTGGTTCCG
CCTCTGACATGCGTTCACCAGCTGTTAAGAAAGGAAGTGCTACCAAAGTT
AAAAAGGttGAAGATGATGAGCGACCTATCCCACAAACCAATGGACGTTA
CAATCAGAAAGATTATACAGATTCCCCCTCCACTGCTAAAAGTAAACACA
ACAAAAATACCGATCCAGATTGGATGGTAGACTTGAAACGAGGAAGTTCC
GCCAAGAAAACGTCCGCAAAAAGTCAACGCAGTGGCCATAACCTCAACGA
TAACGATTCTGGTGTCGACATTAACGAAAATAACGATCGAAGGAGGAGAA
CTGCTGAACGCGAAGCAGATCTCTTCGGTCAGAAGAAAGACCGACATCCA
AGTGCTGGTCGTCGTGTCACTTCATCAAACAAAGGTTCATCCAACAAGCT
GGCCAATTTTTGCCATGACTGTGGAACGAAATATCCGGTGGTGGAAGCCA
AATTTTGTTGTGAATGCGGACTACGAAGGATGGCCATTACGTGAATGTAC
AGCGATAGTTATGATGAAGATGACGATGCACCATATGatGATGTACCAGT
CTCCTTGGTACCATGTTCAAATTGTGGTCGAAAATTCAATTCAGATAGTT
TGGCGCGGCACGAGAATGTTTGCAGCAACCTGAAGCCGCGAAAAGTTTTC
GATTCCAGCAAACAAAGAACTGAAGGTTTGGAGAAGCCGAAAGTCACAAG
ATCAGACCCTCCAAAGAAGgcacCGAGGAAGAAAGATTGGCGAAGACAAC
ATGATGAATTTATTAAGAACATTCGAGCGGCACGCGGTGTGAAAAAGGCT
CTCGAGACGGGTGGTGAATTACCGCCTCCGCCCGAACCCTCTTACAACCC
TGACTATGTACAGTGTCAACACTGTAACAGAAGGTTCAACGAAAGTGCAG
CTGAAAGACACATCAAATTCTGCAAGGAACAAAAATCACGCCTTCCAAAA
GCTCCCTCAGACTCAAAGTTTTCACAGAAATCAGAGAAACAGAAAATCAG
AACACAGtaCAGACCACCGGTTCCAGGACAGAAGAAGAGTAGCACGTCAT
CACCTGCCAAACCTCGTGGTTCCGCCTCTGACATGCGTTCACCAGCTGTT
AAGAAAGGAAGTGCTACCAAAGTTAAAAAGGttGAAGATGATGAGCGACC
TATCCCACAAACCAATGGACGTTACAATCAGAAAGATTATACAGATTCCC
CCTCCACTGCTAAAAGTAAACACAACAAAAATACCGATCCAGATTGGATG
GTAGACTTGAAACGAGGAAGTTCCGCCAAGAAAACGTCCGCAAAAAGTCA
ACGCAGTGGCCATAACCTCAACGATAACGATTCTGGTGTCGACATTAACG
AAAATAACGATCGAAGGAGGAGAACTGCTGAACGCGAAGCAGATCTCTTC
GGTCAGAAGAAAGACCGACATCCAAGTGCTGGTCGTCGTGTCACTTCATC
AAACAAAGGTTCATCCAACAAGCTGGCCAATTTTTGCCATGACTGTGGAA
CGAAATATCCGGTGGTGGAAGCCAAATTTTGTTGTGAATGCGGACTACGA
AGGATGGCCATTACGTGAATGTACAGCGATAGTTATGATGAAGATGACGA
TGCACCATATGatGATGTACCAGTCTCCTTGGTACCATGTTCAAATTGTG
GTCGAAAATTCAATTCAGATAGTTTGGCGCGGCACGAGAATGTTTGCAGC
AACCTGAAGCCGCGAAAAGTTTTCGATTCCAGCAAACAAAGAACTGAAGG
TTTGGAGAAGCCGAAAGTCACAAGATCAGACCCTCCAAAGAAGgcacCGA
GGAAGAAAGATTGGCGAAGACAACATGATGAATTTATTAAGAACATTCGA
GCGGCACGCGGTGTGAAAAAGGCTCTCGAGACGGGTGGTGAATTACCGCC
TCCGCCCGAACCCTCTTACAACCCTGACTATGTACAGTGTCAACACTGTA
ACAGAAGGTTCAACGAAAGTGCAGCTGAAAGACACATCAAATTCTGCAAG
GAACAAAAATCACGCCTTCCAAAAGCTCCCTCAGACTCAAAGTTTTCACA
GAAATCAGAGAAACAGAAAATCAGAACACAGtaCAGACCACCGGTTCCAG
GACAGAAGAAGAGTAGCACGTCATCACCTGCCAAACCTCGTGGTTCCGCC
TCTGACATGCGTTCACCAGCTGTTAAGAAAGGAAGTGCTACCAAAGTTAA
AAAGGttGAAGATGATGAGCGACCTATCCCACAAACCAATGGACGTTACA
ATCAGAAAGATTATACAGATTCCCCCTCCACTGCTAAAAGTAAACACAAC
AAAAATACCGATCCAGATTGGATGGTAGACTTGAAACGAGGAAGTTCCGC
CAAGAAAACGTCCGCAAAAAGTCAACGCAGTGGCCATAACCTCAACGATA
ACGATTCTGGTGTCGACATTAACGAAAATAACGATCGAAGGAGGAGAACT
GCTGAACGCGAAGCAGATCTCTTCGGTCAGAAGAAAGACCGACATCCAAG
TGCTGGTCGTCGTGTCACTTCATCAAACAAAGGTTCATCCAACAAGCTGG
CCAATTTTTGCCATGACTGTGGAACGAAATATCCGGTGGTGGAAGCCAAA
TTTTGTTGTGAATGCGGACTACGAAGGATGGCCATTACGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009201	XLOC_009201	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00016474-protein	TCONS_00016474-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000240	supercontig	sc0000240:203401..209140 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3456	8.69929	42.164	46.3945	51.021	39.6837	28.0261	31.3861	26.369	28.675	24.7272	21.0382	14.0415	14.1714	9.71553	10.8305	11.3504	11.4402	14.3463	15.1141	9.31083	10.0323	10.8055	11.5406	31.4109	31.4527	6.24162	6.15913	6.19479	6.36324

Blast

[Close]

BLAST of TCONS_00016474 vs. Swiss-Prot (Human)
Match: ZC21A (Zinc finger C2HC domain-containing protein 1A OS=Homo sapiens GN=ZC2HC1A PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.199e-33
Identity = 88/188 (46.81%), Postives = 120/188 (63.83%), Query Frame = 1

Query:  109 LVPCSNCGRKFNSDSLARHENVC--SNLKPRKVFDSSKQRTEGLEKPKVTRSDPPKKAPRKK-DWRRQHDEFIKNIRAARGVKKAXXXXXXXXXXXXXSYNPDYVQCQHCNRRFNESAAERHIKFCKEQKSRLPKAPSDSKFSQKSE-KQKIRTQ-YRPPV------PGQKKSSTSSPAKPRGSASDM 639
            L+PC  CGR F   +L +H  +C  +  K RK FDSS+QR EG + P V    P  + P+K  +WRR+H+EFI  IRAA+G+ +AL+ GG+LPPPP PSY+PDY+QC +C RRFNE+AA+RHI FCKEQ +R+    +  KFS  ++ K   RTQ Y+PP       PG   S +S   +P G+   +
Sbjct:   16 LLPCKICGRTFFPVALKKHGPICQKTATKKRKTFDSSRQRAEGTDIPTVKPLKPRPEPPKKPSNWRRKHEEFIATIRAAKGLDQALKEGGKLPPPPPPSYDPDYIQCPYCQRRFNENAADRHINFCKEQAARI---SNKGKFSTDTKGKPTSRTQVYKPPALKKSNSPGTASSGSSRLPQPSGAGKTV 200

The following BLAST results are available for this feature:

BLAST of TCONS_00016474 vs. Swiss-Prot (Human)

BLAST of TCONS_00016474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZC21A	1.199e-33	46.81	Zinc finger C2HC domain-containing protein 1A OS=H...	[more]

You are here

TCONS_00016474 (transcript) - C. hemisphaerica