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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016489 ID=TCONS_00016489|Name=TCONS_00016489|organism=Clytia hemisphaerica|type=transcript|length=2770bp
CATGTTTCGATTTTATCAAGTTGTACAAATGTTAGAAATGATGGTGTGAA
ATTAGCATTTATTATTACCCCTTCTGAGCGGTAAAAGGCAGCAACGTTGA
GTGACCCTGAGCTATTATAATTTTTAGctaatgaaattattatttgaaaC
TAATCTTGTTCAATATTCTTTCTTTCTCAgcaattaataaaaaaattgaa
tcacaAAATAATGATTATTGGTGAAGATGCATTTCAATTTATGGATACAT
TGATATGCATGGCTATCTTGTGGAATGAGCTGTCATGATTAATGTAATTT
TGTTCAATCATTTGTTCAGGTTTGTTTGAAATGACCTTCCTTGAAGCTCG
TAAAGATTGAGCTTTCTTCCACCTACGTTATTTCGTCGTGGAGTATTTTG
ATTAAGCTCGGGAGCACTTTGGAAGAGAGGGGGCTCGAGCTTGTTTATTG
GAACCCgttatttgattttttgggaCCTAAATATCTTTTACAACTATCTA
TCTAACCATAAATGCTcttctttaactttttctttaCTGAGGTTCCTGCA
GTCGAAAACCAGGATGGCGGTGGGTTAAGACGGGCGGAAAGCACCCTAAC
ATTATAACAAGATAAATCtcctttcgattttcaaagtttgTCTCGCTCAT
TTTCATCTCTTGTAAAAGAACTCGTTCTGTCATTCAACGAGATGCTTCAA
ATTCTTATTTGTTTATCGCTATTGGTTTTTGATTGCTTAATAACTTGCGT
GAAATGAGTGGTTTTCAATTACTTATTTATTAGCCTTGGTCAGGTAGTAA
CTGATGATAAGGGAAATTAGTACCCATTTTATTGTCATACTTCCAAAATG
ATAACATTATGTTGAAACATGGAGTCCTGTTCATGGCGCAAAAAAATCAG
CTGCttgaaaagaaaacctttaCTCTGAATGAACGAACAGACGGCTTGTC
AGTACATGAATTCTGTTGTCATGGATTATTGCTTCACCCAACGAGCGAGC
CGGGTTACTATGCTATTGGTATTATCACAAGTCTCATTGGAAGAGAAAAG
TAGACAGAATACTCGTGCACGTTTCCTGCTTGTTTACACGATCATGAACA
ATTTGTAAGATTTGTTGAGAAAACAGAGATTGTTTATCATTCACCCCGTT
TGTAAACACTTCACTTGACAAAAAGGGAACGATTTGACGCGAAAGTTGTT
GGCTTCACATAATTGATGATATCGATCAAGTATAAGAGAGACATCAAGCT
AtcaaagCTTCTTCACCAGTCAAGATGATAGGATTGAATGAACCGCTGGA
CATTGCATACACCACACTGTACATCATCTCTCTCATCGGCAACTTGATCT
TCATCTTATACCTGCTGGTGCAACAATTAAAGATATCAGTGGACCGTTTG
TTGTTCACGCAATCCATCGTTCAACTCATCCTCGTCATCCTCGCCGTTCC
CTTCGTTCACGATGCATGGGTGCAAGAACCTTACCAATTTGGTGACTTTG
CTTGCCGTTTCGTGACGCCGTTACATGATTTGTTCGAATTTTCGCAAGGT
TTCATGTACGCAGTGATCGGCTGGTTTATCGCACAAAAGTTGAAAGGGGA
CCAAGAGATTAAATGGAAAGTTCTCTCTTCATTGATCGGTTTACATCTCT
TATGTATTGTATTTCTTTTACCGACGTTCGGTGTTTGGCACCTCGTGTAT
GTCCCTTCCTCTCAAACACATCATTGCAAAGAGGCATGGTCATATGAAGC
TGAAATTATGCACCGAATCAGCCGAGTATTTTTATTCGCTATCCCAACAG
GCATCGCCTTATATTATTACATCAAAGGTTTTCGCATCGTGAAATTTATC
ACCAATTTCTTGAGCCTCAAAAAGTCGAACGCACGTTAccaaagctttgc
aaaagtcaTTTCAGACGTTGGTCATACTCCCGAATCTCATCTTTGCTTTG
GTGAATCAGAAGAAATGAACTTAGAGATGAACCACTTGTATCAAAAGCAT
AATAGCATCTCAACCATTTCAAAAGATGACGTCACCGCCAACATTTCTGT
GCAGATCTTTACCAACGAAGTGGAGATTGATAGGATCGATTCGCAGTCTC
CTCTTTGGCGCGGAAAACCAAAGGCTGGGGAGTACCAAAAGATGGTGGTC
TCCATAAAGTGGTTCCGCTACACTCGCAATCTTTATCAGGCTTTCCTTGT
GTCAGTCATTTTCTACGCTGTCGCCTCCGCCCCTTACTTCGTTTTTCTTC
TCTACACGACCGACCGAAAAACCGAGTTTACGAACACGGAAAAGTGGGCT
GCTTCTATCATCTTTTTTATCCGATACTCCACTTGTTTGGTGAACCCTTG
GATTTTCATGCTtggtattttcaaatttcgtaAGAGTTTGTTTGGCAAAT
GTTATCGACAGCAACGAGACTTCGTCCTTCTACCGGATTCGGTGAAAGAA
GATACTTCGTGAATATGAAATAATATCAATATGTGCGCCATTTCGCATTA
CTTCAGGATAAATGAATGAGCTGAAATGaatcaatattttaaacaattta
aagTCTGGTCACCAAGTTCGTAACATAGGGTTTACTGTTATGTTATATGA
TAAGTACAGGAAAGTTTACGGAAAAATATATCTACAAACATAGATCGCTG
CTTTTTTCTCCCTTGTCAAAGATTGATGTTCGACAAACCTCTATTGAtag
actttttggacctacctccgggtgccccggtggaggttctataaattaac
ccatgtccgtccgttcgttc Run BLAST on NCBI protein sequence of 7 transmembrane protein >TCONS_00016489-protein ID=TCONS_00016489-protein|Name=7 transmembrane protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
MIGLNEPLDIAYTTLYIISLIGNLIFILYLLVQQLKISVDRLLFTQSIVQ
LILVILAVPFVHDAWVQEPYQFGDFACRFVTPLHDLFEFSQGFMYAVIGW
FIAQKLKGDQEIKWKVLSSLIGLHLLCIVFLLPTFGVWHLVYVPSSQTHH
CKEAWSYEAEIMHRISRVFLFAIPTGIALYYYIKGFRIVKFITNFLSLKK
SNARYQSFAKVISDVGHTPESHLCFGESEEMNLEMNHLYQKHNSISTISK
DDVTANISVQIFTNEVEIDRIDSQSPLWRGKPKAGEYQKMVVSIKWFRYT
RNLYQAFLVSVIFYAVASAPYFVFLLYTTDRKTEFTNTEKWAASIIFFIR
YSTCLVNPWIFMLGIFKFRKSLFGKCYRQQRDFVLLPDSVKEDTS Run BLAST on NCBI transcript from alignment at sc0000240:127415..130615- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016489 ID=TCONS_00016489|Name=TCONS_00016489|organism=Clytia hemisphaerica|type=transcript|length=3201bp|location=Sequence derived from alignment at sc0000240:127415..130615- (Clytia hemisphaerica)
CATGTTTCGATTTTATCAAGTTGTACAAATGTTAGAAATGATGGTGTGAA
ATTAGCATTTATTATTACCCCTTCTGAGCGGTAAAAGGCAGCAACGTTGA
GTGACCCTGAGCTATTATAATTTTTAGCTAATGAAATTATTATTTGAAAC
TAATCTTGTTCAATATTCTTTCTTTCTCAGCAATTAATAAAAAAATTGAA
TCACAAAATAATGATTATTGGTGAAGATGCATTTCAATTTATGGATACAT
TGATATGCATGGCTATCTTGTGGAATGAGCTGTCATGATTAATGTAATTT
TGTTCAATCATTTGTTCAGGTTTGTTTGAAATGACCTTCCTTGAAGCTCG
TAAAGATTGAGCTTTCTTCCACCTACGTTATTTCGTCGTGGAGTATTTTG
ATTAAGCTCGGGAGCACTTTGGAAGAGAGGGGGCTCGAGCTTGTTTATTG
GAACCCGTTATTTGATTTTTTGGGACCTAAATATCTTTTACAACTATCTA
TCTAACCATAAATGCTCTTCTTTAACTTTTTCTTTACTGAGGTTCCTGCA
GTCGAAAACCAGGATGGCGGTGGGTTAAGACGGGCGGAAAGCACCCTAAC
ATTATAACAAGATAAATCTCCTTTCGATTTTCAAAGTTTGTCTCGCTCAT
TTTCATCTCTTGTAAAAGAACTCGTTCTGTCATTCAACGAGATGCTTCAA
ATTCTTATTTGTTTATCGCTATTGGTTTTTGATTGCTTAATAACTTGCGT
GAAATGAGTGGTTTTCAATTACTTATTTATTAGCCTTGGTCAGGTAGTAA
CTGATGATAAGGGAAATTAGTACCCATTTTATTGTCATACTTCCAAAATG
ATAACATTATGTTGAAACATGGAGTCCTGTTCATGGCGCAAAAAAATCAG
CTGCTTGAAAAGAAAACCTTTACTCTGAATGAACGAACAGACGGCTTGTC
AGTACATGAATTCTGTTGTCATGGATTATTGCTTCACCCAACGAGCGAGC
CGGGTTACTATGCTATTGGTATTATCACAAGTCTCATTGGAAGAGAAAAG
TAGACAGAATACTCGTGCACGTTTCCTGCTTGTTTACACGATCATGAACA
ATTTGTAAGATTTGTTGAGAAAACAGAGATTGTTTATCATTCACCCCGTT
TGTAAACACTTCACTTGACAAAAAGGGAACGATTTGACGCGAAAGTTGTT
GGCTTCACATAATTGATGATATCGATCAAGTATAAGAGAGACATCAAGCT
ATCAAAGGTGATTTTTTTGCTTCCAATTTCCAAATTAATTAAATAGTTAA
TCGTTATAAATGAGAAGGGAAATTTTCCATGGTAACTTCATTTCTGATTG
CAAAGAGAGTTTTTTCGATGCTTTTCGTGTTCGTCTCTTTATACATTTTT
GTTGACAAATTTCTTGTGTTATAAAAAGTGGGCGTGTTGAAATTAATCGT
ACTGTTAGCCCAGTAAATTGTATATTTTAATTCTATAAAGAAATTCGGTT
AAGGTGAACGCCTAATTAACAGATTACCTCGTCTTGTAAAAATTCTTCAA
CGTTAAGCCAGAGAATGTTGATGTATGAAGTTTAAACCTTTTAGCGTTTA
TTCTATGGTCTCGTGTAAATGTCATTTTTTTGTGGAAAAGAGGTTGATAA
CACCTCATAACAACACCTCGCTTCTCTTCTTCTTTTAGCTTCTTCACCAG
TCAAGATGATAGGATTGAATGAACCGCTGGACATTGCATACACCACACTG
TACATCATCTCTCTCATCGGCAACTTGATCTTCATCTTATACCTGCTGGT
GCAACAATTAAAGATATCAGTGGACCGTTTGTTGTTCACGCAATCCATCG
TTCAACTCATCCTCGTCATCCTCGCCGTTCCCTTCGTTCACGATGCATGG
GTGCAAGAACCTTACCAATTTGGTGACTTTGCTTGCCGTTTCGTGACGCC
GTTACATGATTTGTTCGAATTTTCGCAAGGTTTCATGTACGCAGTGATCG
GCTGGTTTATCGCACAAAAGTTGAAAGGGGACCAAGAGATTAAATGGAAA
GTTCTCTCTTCATTGATCGGTTTACATCTCTTATGTATTGTATTTCTTTT
ACCGACGTTCGGTGTTTGGCACCTCGTGTATGTCCCTTCCTCTCAAACAC
ATCATTGCAAAGAGGCATGGTCATATGAAGCTGAAATTATGCACCGAATC
AGCCGAGTATTTTTATTCGCTATCCCAACAGGCATCGCCTTATATTATTA
CATCAAAGGTTTTCGCATCGTGAAATTTATCACCAATTTCTTGAGCCTCA
AAAAGTCGAACGCACGTTACCAAAGCTTTGCAAAAGTCATTTCAGACGTT
GGTCATACTCCCGAATCTCATCTTTGCTTTGGTGAATCAGAAGAAATGAA
CTTAGAGATGAACCACTTGTATCAAAAGCATAATAGCATCTCAACCATTT
CAAAAGATGACGTCACCGCCAACATTTCTGTGCAGATCTTTACCAACGAA
GTGGAGATTGATAGGATCGATTCGCAGTCTCCTCTTTGGCGCGGAAAACC
AAAGGCTGGGGAGTACCAAAAGATGGTGGTCTCCATAAAGTGGTTCCGCT
ACACTCGCAATCTTTATCAGGCTTTCCTTGTGTCAGTCATTTTCTACGCT
GTCGCCTCCGCCCCTTACTTCGTTTTTCTTCTCTACACGACCGACCGAAA
AACCGAGTTTACGAACACGGAAAAGTGGGCTGCTTCTATCATCTTTTTTA
TCCGATACTCCACTTGTTTGGTGAACCCTTGGATTTTCATGCTTGGTATT
TTCAAATTTCGTAAGAGTTTGTTTGGCAAATGTTATCGACAGCAACGAGA
CTTCGTCCTTCTACCGGATTCGGTGAAAGAAGATACTTCGTGAATATGAA
ATAATATCAATATGTGCGCCATTTCGCATTACTTCAGGATAAATGAATGA
GCTGAAATGAATCAATATTTTAAACAATTTAAAGTCTGGTCACCAAGTTC
GTAACATAGGGTTTACTGTTATGTTATATGATAAGTACAGGAAAGTTTAC
GGAAAAATATATCTACAAACATAGATCGCTGCTTTTTTCTCCCTTGTCAA
AGATTGATGTTCGACAAACCTCTATTGATAGACTTTTTGGACCTACCTCC
GGGTGCCCCGGTGGAGGTTCTATAAATTAACCCATGTCCGTCCGTTCGTT
C Coding sequence (CDS) from alignment at sc0000240:127415..130615- >TCONS_00016489 ID=TCONS_00016489|Name=TCONS_00016489|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0000240:127415..130615- (Clytia hemisphaerica)
ATGATAGGATTGAATGAACCGCTGGACATTGCATACACCACACTGTACAT
CATCTCTCTCATCGGCAACTTGATCTTCATCTTATACCTGCTGGTGCAAC
AATTAAAGATATCAGTGGACCGTTTGTTGTTCACGCAATCCATCGTTCAA
CTCATCCTCGTCATCCTCGCCGTTCCCTTCGTTCACGATGCATGGGTGCA
AGAACCTTACCAATTTGGTGACTTTGCTTGCCGTTTCGTGACGCCGTTAC
ATGATTTGTTCGAATTTTCGCAAGGTTTCATGTACGCAGTGATCGGCTGG
TTTATCGCACAAAAGTTGAAAGGGGACCAAGAGATTAAATGGAAAGTTCT
CTCTTCATTGATCGGTTTACATCTCTTATGTATTGTATTTCTTTTACCGA
CGTTCGGTGTTTGGCACCTCGTGTATGTCCCTTCCTCTCAAACACATCAT
TGCAAAGAGGCATGGTCATATGAAGCTGAAATTATGCACCGAATCAGCCG
AGTATTTTTATTCGCTATCCCAACAGGCATCGCCTTATATTATTACATCA
AAGGTTTTCGCATCGTGAAATTTATCACCAATTTCTTGAGCCTCAAAAAG
TCGAACGCACGTTACCAAAGCTTTGCAAAAGTCATTTCAGACGTTGGTCA
TACTCCCGAATCTCATCTTTGCTTTGGTGAATCAGAAGAAATGAACTTAG
AGATGAACCACTTGTATCAAAAGCATAATAGCATCTCAACCATTTCAAAA
GATGACGTCACCGCCAACATTTCTGTGCAGATCTTTACCAACGAAGTGGA
GATTGATAGGATCGATTCGCAGTCTCCTCTTTGGCGCGGAAAACCAAAGG
CTGGGGAGTACCAAAAGATGGTGGTCTCCATAAAGTGGTTCCGCTACACT
CGCAATCTTTATCAGGCTTTCCTTGTGTCAGTCATTTTCTACGCTGTCGC
CTCCGCCCCTTACTTCGTTTTTCTTCTCTACACGACCGACCGAAAAACCG
AGTTTACGAACACGGAAAAGTGGGCTGCTTCTATCATCTTTTTTATCCGA
TACTCCACTTGTTTGGTGAACCCTTGGATTTTCATGCTTGGTATTTTCAA
ATTTCGTAAGAGTTTGTTTGGCAAATGTTATCGACAGCAACGAGACTTCG
TCCTTCTACCGGATTCGGTGAAAGAAGATACTTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016489-exon-sc0000240-1575043694:129359..130615 | TCONS_00016489-exon-sc0000240-1575043694:129359..130615 | Clytia hemisphaerica | exon |
| TCONS_00016489-exon-sc0000240-1575043694:127415..128927 | TCONS_00016489-exon-sc0000240-1575043694:127415..128927 | Clytia hemisphaerica | exon |
| TCONS_00016489-exon-sc0000240-1510915933:129359..130615 | TCONS_00016489-exon-sc0000240-1510915933:129359..130615 | Clytia hemisphaerica | exon |
| TCONS_00016489-exon-sc0000240-1510915933:127415..128927 | TCONS_00016489-exon-sc0000240-1510915933:127415..128927 | Clytia hemisphaerica | exon |
| TCONS_00016489-exon-sc0000240-1491911889:129359..130615 | TCONS_00016489-exon-sc0000240-1491911889:129359..130615 | Clytia hemisphaerica | exon |
| TCONS_00016489-exon-sc0000240-1491911889:127415..128927 | TCONS_00016489-exon-sc0000240-1491911889:127415..128927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000240 | supercontig | sc0000240:127415..130615 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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