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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016492 ID=TCONS_00016492|Name=TCONS_00016492|organism=Clytia hemisphaerica|type=transcript|length=1240bp
GATATGTACTACGAAGTTAAACATCTCGATCTGGTTGCAAGAGAATTTAA
AATGCACGATCACTGCAGAAAACGCTTTCTTAGAGGATTTAGAGAAgaaa
atcgaaagaaaaagCTCGAAGCTACAGGGAATCAGGAGTCCACAACATCT
CTGAGGACTGATTTTGATGCTGTCAAGGCGTACATCAGAAATGTAATCAT
AGGAGAAAACAAAGTTGTCTCGACGAAGATATTGCAATCGATTTATGGTT
ATACCCCTTATAGCAACGATGACAAGCGTtctagacataaactcaagaaT
AAAATCATCAACGAGTTTCCAGATACTCTACAATTCGTCCAACCTGGTGG
TCAATGTGCGGAAGTTGTGTTCAGCAAATCcatttttgatgagaaaatga
TGCCATCGTTTGATCCTAACTCTAACATAATTTCTGTTTCAAAACAACTT
CGAAAAGATATTATCACATTTTGTAAGTCGGTTCCTGGACATAAGTGGCC
ACCAACCTTTGATAGCTTAACGGGTGAATACGGAAAGCCACCAGAATCAG
TCCAATTATTCTTAAAGCACTTGCTAAcctcagaaaaaaacaaagaaaga
caCAGCATTTCGGCTAATCGATTCGTTTACATCCGACTTCATCCATAATG
TCAGTAATGGAAAGGTTATCACTTCCAAGCATTATTTACTTACTCTTGGA
CTCCACAACATCACTGGGCAAAGGCAACCTGTCGAAATTACAAATAAACT
TGGGCATTGTATGTCATACGGCACTTGCTGCGAAATTGAAACGACACTAT
CTGAAGCTTCAATGCTGAAAGCCAAGGAAACTTATATTCTTAAGATGCGA
CCTATTGACCACGAGTTTATCTTTACATGGTTTTGGGTTGATAACTTTGA
TGTCTTGGTGGAGAAAGCTGGAGGAGGTGGGTCGGTAAACACAACACATC
TGGTAGCCTTCCAGGAACCAGGACTCAGAGGCGCTAACAAGGATTTACAC
GTCGAGATACCAAGGACCCGGAAACGAAAATTATGCATTCCAACAGAAAA
AAGAGCATGTTGCATATAATGTTGATACTGCTGCACCACCACCAGCTATC
AACACAACCTCTCACAACGAAAGCTTTAGTGAGATGGATTTCAACAACTC
GATGTTCACCTGGATCTTTTTCAGAAACGTCAATCATTCAGATTAAGCTG
TTCCGATTTTCACCGGTTGGAGACTATTTGGAAGCAAGCC Run BLAST on NCBI protein sequence of TCONS_00016492-protein >TCONS_00016492-protein ID=TCONS_00016492-protein|Name=TCONS_00016492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
DMYYEVKHLDLVAREFKMHDHCRKRFLRGFREENRKKKLEATGNQESTTS
LRTDFDAVKAYIRNVIIGENKVVSTKILQSIYGYTPYSNDDKRSRHKLKN
KIINEFPDTLQFVQPGGQCAEVVFSKSIFDEKMMPSFDPNSNIISVSKQL
RKDIITFCKSVPGHKWPPTFDSLTGEYGKPPESVQLFLKHLLTSEKNKER
HSISANRFVYIRLHP Run BLAST on NCBI transcript from alignment at sc0000240:385521..387106- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016492 ID=TCONS_00016492|Name=TCONS_00016492|organism=Clytia hemisphaerica|type=transcript|length=1586bp|location=Sequence derived from alignment at sc0000240:385521..387106- (Clytia hemisphaerica)
GATATGTACTACGAAGTTAAACATCTCGATCTGGTTGCAAGAGAATTTAA
AATGCACGATCACTGCAGAAAACGCTTTCTTAGAGGATTTAGAGAAGAAA
ATCGAAAGAAAAAGCTCGAAGCTACAGGGAATCAGGTTTAAACTTTGCTT
TTTCGTCATTTACGTTATGCTGTTTTGCTATTAAACTCCAAGGCTTTTCA
ATAGTCCTTTTCGGGATCGCGAAACCATATTGAATGATTTCTTATTCACT
CGCTTGCGAACACTCGCAAAATTGAGTGAGCATTCACGCGCGTACTACAC
GAAATCATTGGTTGGTTCTTGTGCTGGATTATGACGTCACTGTGAGTCAA
TCCACTGGCACAAGATTCAAAAAAAATAATTCAATATGGTGTCGCGATCC
CGAAAAGGACTATCTTAAGAGTAAATTCTATAAAAAATCTAGCCCTTTAT
CAATGATTATCCATTGCTTATTCATTTTAAGGAGTCCACAACATCTCTGA
GGACTGATTTTGATGCTGTCAAGGCGTACATCAGAAATGTAATCATAGGA
GAAAACAAAGTTGTCTCGACGAAGATATTGCAATCGATTTATGGTTATAC
CCCTTATAGCAACGATGACAAGCGTTCTAGACATAAACTCAAGAATAAAA
TCATCAACGAGTTTCCAGATACTCTACAATTCGTCCAACCTGGTGGTCAA
TGTGCGGAAGTTGTGTTCAGCAAATCCATTTTTGATGAGAAAATGATGCC
ATCGTTTGATCCTAACTCTAACATAATTTCTGTTTCAAAACAACTTCGAA
AAGATATTATCACATTTTGTAAGTCGGTTCCTGGACATAAGTGGCCACCA
ACCTTTGATAGCTTAACGGGTGAATACGGAAAGCCACCAGAATCAGTCCA
ATTATTCTTAAAGCACTTGCTAACCTCAGAAAAAAACAAAGAAAGACACA
GCATTTCGGCTAATCGATTCGTTTACATCCGACTTCATCCATAATGTCAG
TAATGGAAAGGTTATCACTTCCAAGCATTATTTACTTACTCTTGGACTCC
ACAACATCACTGGGCAAAGGCAACCTGTCGAAATTACAAATAAACTTGGG
CATTGTATGTCATACGGCACTTGCTGCGAAATTGAAACGACACTATCTGA
AGCTTCAATGCTGAAAGCCAAGGAAACTTATATTCTTAAGATGCGACCTA
TTGACCACGAGTTTATCTTTACATGGTTTTGGGTTGATAACTTTGATGTC
TTGGTGGAGAAAGCTGGAGGAGGTGGGTCGGTAAACACAACACATCTGGT
AGCCTTCCAGGAACCAGGACTCAGAGGCGCTAACAAGGATTTACACGTCG
AGATACCAAGGACCCGGAAACGAAAATTATGCATTCCAACAGAAAAAAGA
GCATGTTGCATATAATGTTGATACTGCTGCACCACCACCAGCTATCAACA
CAACCTCTCACAACGAAAGCTTTAGTGAGATGGATTTCAACAACTCGATG
TTCACCTGGATCTTTTTCAGAAACGTCAATCATTCAGATTAAGCTGTTCC
GATTTTCACCGGTTGGAGACTATTTGGAAGCAAGCC Coding sequence (CDS) from alignment at sc0000240:385521..387106- >TCONS_00016492 ID=TCONS_00016492|Name=TCONS_00016492|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at sc0000240:385521..387106- (Clytia hemisphaerica)
GAGTCCACAACATCTCTGAGGACTGATTTTGATGCTGTCAAGGCGTACAT
CAGAAATGTAATCATAGGAGAAAACAAAGTTGTCTCGACGAAGATATTGC
AATCGATTTATGGTTATACCCCTTATAGCAACGATGACAAGCGTTCTAGA
CATAAACTCAAGAATAAAATCATCAACGAGTTTCCAGATACTCTACAATT
CGTCCAACCTGGTGGTCAATGTGCGGAAGTTGTGTTCAGCAAATCCATTT
TTGATGAGAAAATGATGCCATCGTTTGATCCTAACTCTAACATAATTTCT
GTTTCAAAACAACTTCGAAAAGATATTATCACATTTTGTAAGTCGGTTCC
TGGACATAAGTGGCCACCAACCTTTGATAGCTTAACGGGTGAATACGGAA
AGCCACCAGAATCAGTCCAATTATTCTTAAAGCACTTGCTAACCTCAGAA
AAAAACAAAGAAAGACACAGCATTTCGGCTAATCGATTCGTTTACATCCG
ACTTCATCCATAAGATATGTACTACGAAGTTAAACATCTCGATCTGGTTG
CAAGAGAATTTAAAATGCACGATCACTGCAGAAAACGCTTTCTTAGAGGA
TTTAGAGAAGAAAATCGAAAGAAAAAGCTCGAAGCTACAGGGAATCAGGA
GTCCACAACATCTCTGAGGACTGATTTTGATGCTGTCAAGGCGTACATCA
GAAATGTAATCATAGGAGAAAACAAAGTTGTCTCGACGAAGATATTGCAA
TCGATTTATGGTTATACCCCTTATAGCAACGATGACAAGCGTTCTAGACA
TAAACTCAAGAATAAAATCATCAACGAGTTTCCAGATACTCTACAATTCG
TCCAACCTGGTGGTCAATGTGCGGAAGTTGTGTTCAGCAAATCCATTTTT
GATGAGAAAATGATGCCATCGTTTGATCCTAACTCTAACATAATTTCTGT
TTCAAAACAACTTCGAAAAGATATTATCACATTTTGTAAGTCGGTTCCTG
GACATAAGTGGCCACCAACCTTTGATAGCTTAACGGGTGAATACGGAAAG
CCACCAGAATCAGTCCAATTATTCTTAAAGCACTTGCTAACCTCAGAAAA
AAACAAAGAAAGACACAGCATTTCGGCTAATCGATTCGTTTACATCCGAC
TTCATCCATAAGATATGTACTACGAAGTTAAACATCTCGATCTGGTTGCA
AGAGAATTTAAAATGCACGATCACTGCAGAAAACGCTTTCTTAGAGGATT
TAGAGAAGAAAATCGAAAGAAAAAGCTCGAAGCTACAGGGAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016492-exon-sc0000240-1575043694:386972..387106 | TCONS_00016492-exon-sc0000240-1575043694:386972..387106 | Clytia hemisphaerica | exon |
| TCONS_00016492-exon-sc0000240-1575043694:385521..386625 | TCONS_00016492-exon-sc0000240-1575043694:385521..386625 | Clytia hemisphaerica | exon |
| TCONS_00016492-exon-sc0000240-1510915933:386972..387106 | TCONS_00016492-exon-sc0000240-1510915933:386972..387106 | Clytia hemisphaerica | exon |
| TCONS_00016492-exon-sc0000240-1510915933:385521..386625 | TCONS_00016492-exon-sc0000240-1510915933:385521..386625 | Clytia hemisphaerica | exon |
| TCONS_00016492-exon-sc0000240-1491911889:386972..387106 | TCONS_00016492-exon-sc0000240-1491911889:386972..387106 | Clytia hemisphaerica | exon |
| TCONS_00016492-exon-sc0000240-1491911889:385521..386625 | TCONS_00016492-exon-sc0000240-1491911889:385521..386625 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000240 | supercontig | sc0000240:385521..387106 - |
Blast
The following BLAST results are available for this feature:
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