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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016550 ID=TCONS_00016550|Name=TCONS_00016550|organism=Clytia hemisphaerica|type=transcript|length=3364bp
gggcgagcctagaatttcttttgatttattacataaaagaaatcaaaaga
ctttaacgaccaattaccgacaaattcatctcctgtctttctttatacct
ccatgctatGGTAAAGTTACTTTACTAAAACAAAAATCCGAAACGGTATG
AAGGCCGAAAACTTGGATCAAAGAATAgacaaatttaaaatcaaaatttt
ggttcGACGAAATAGTCTTTAACAATGTTATAGAATTTACATGATATTAT
AGTGCTCACCGGGAGCTATCAAAAATAATAATCTACaaaacataatatca
aaaaaataaatcaaatagcTATTAATTATACTTTCTATGTCTATCAAACC
ATATTCCTATCTACtatgaattattttcaaaataatttgcttTTATGATC
TCTAACAGTGATTCCTTTCCTAAAATAGATTTTATCGGAgtgtaaaaatc
tttttaaattaaTGCTCAATTCATTTCCAACCCTACCTGACCATTATATC
TAAATATTTACATTACTAGTTACGATTCAAAACAAATCTATTcttaaata
aactaaaaatttttcaatacagttgtttcgtttttcaaaatgtttttatt
taaatgATAGAAATTTCTTTCTGTGTGTTTGTATGTCCGTTCGTTAATTT
GGTTCGCATTGGTGGTGATGATTTTTCGTTCAGTTCTCCTTTCTTGTCTG
AAGAAATAAGAGCTTGTGGCTTCATCTCATTGTAAACTGATTGCATGTCC
ATAAGCTTGTGTTCCAAAGTCATATGGTTTTGTGGAGGTAAGGCTAGGCA
AGCTCTTAGAATGTTTTCAATAGCAGACCGTTGCTTGAAGAGAGCGTTAA
CGACTGGTGTGCCTTTTGGGACAAGTGGAGCTTTCAACAGGTAAGAAAGT
AGCGATAAAACTGAATTGAAGGTTTGATATTCACCTGTACCTACTCGCAT
TTTGATTCGTTGACATAATTCGGTTAAGAGGACGAGATCAAGAATGATGG
GTGTCGCGAGAAGCGAGTCTTCACAGGTGTTATGAAGGACGATGGTGTTC
GTACCATGCATCATGATTTCGGACGTGTATTCGTCTAGCGCTCGTTTACT
GTCGGCGACGGTCGGTACGTACTTGATGACGACGACATGATCCGGCTTTT
CACCTTCTTTGTACAAGATACGATTGGATTCAACCATGTCATCAACGACA
TTGCTCTTGGAGATCTCTTTGGAACGGAATTGTTTTGGTGCTGAGAGATT
TTTTCCATCGTTGTTTCCAAGGTGGTTGTAACTGGCAATCGAGACTGGTT
TGATGCCTGCACCAACCAAAAAGTCGACCAGTACTGATTTGATTTTCGTT
TGACCAGATTTGAAGTCGTCACCACCGAGGAAAACATTACGTTCTTCAGC
CAGTTGAATAACACCAGGAACAAAGGTGTTCTGTGGAGATCCATTGATGT
ACGCGCAACCTTCCAGAATACTTGCCAAGGCGTAGATTGATGAAGCTGAG
ATTTCAATTTCATCACGTTTGATGGCATCCAAGATGTTTTCTGCAGTGTC
ATGAACACCAGGGATGACGTCACAGAATCGTTCAGTGTTTGCTGTCCATA
ACACGATCACCTTATCCAGTTTGTTCTTCTCCTTGAAGTCACGGATATCC
TTGCGGATGGTGGTCATTTGTTGTTCGGCCGATCCAAGCACGACATTGTC
CGCGCGGTCCGATTGGTTTGCTGCGATGAAGTCTGGACGATAGACGGCAG
GTCTTGGTTTCATGTCGTTCATGTATGGAGCAAGTTTTCGTTGGAGGTCG
AAATCAAAGACTTCAGCCCGTTGCATGGCATCAGTTATTGAGAGAGAGGA
GATGTCCCATCCATCGATAATGAGGTCATCTGGTTGTAACATTGGTAAGA
CGTCTCTCATAGCAACGAATTCTTCTCCTTGCTCACTGAAGCCAAGACTG
ACTGTAGATGATTGCAATAAGGATCCAAACCAGTTCGGTTGCTTTTCACC
AGATTTGGTGTTCCATGAGATGTTGTGTTTGTTGGCAAGGTAAGCTCCAG
TGAAAGTGGTACCATTGTTGCCACCCCATCCCACAAGCATGACTCCAACC
TTAGGGACATGTCGTTGGACTTTGAATTTAACTTCAACATCGACAGGTGT
GACGGTGATCCTTTGAGGTGTTGGACGTTCGACTTTGGTCGTTTGGTAAA
TGTATTTGGATTGGATCTCGTCAGAGGTGTATTCCACGTTGCAACTGTTT
ACTTCAATCATGATGATTCtgtagagaaaaaaagaaaaactaggTTAGgt
attgaaaatataaaaaacttcgTAAGTAAGAATCACAAAAAGTCCTTAGA
AAATTTAAGACTATTCCAAAGAGTTTATACAAAAACTTATCGAGGTGAAA
TACTCAAAGCTATGCagatatttttaaaacatgTACACACCTTCAAAGAT
GTTCTAGATAAGTCAAGTCTACCTTTCCTCTTTTCTCTTTCAACTTTTAA
ACCAAGTGAATTTTTTATGTGAGATTTTATCAGAAATTTTCTACCTTTTA
TAGTTTTCGAAACTAAAGCTATTGTGCAAGAGAGCTCAAATGAAACCCTG
TTATTTCAGGTTGTACAGATCTTTCAACAGGACTTTCAATTCACATAGAA
GGGTTGCCTCGCAATTTCCCAACATGACAGTGTAATACAatataaaagca
tgaaattatAAAAGTCGAAAAAAGAATTTCCTCAGAATTTTGACCTTTTA
ATGGGCTCTTTGACCTTTTAAGGATaaagtttgaattttcaaagtaaaca
aatgTATGAAATTAGATATGATAAATTTAGCCTAGGAGGTGTGCTGTAGG
TAACTTGTACAATATCCCAATTTTTATCAGAAAGGATTTTTACAACAGTG
AGGCAGATTAGAAGTGCATTTCAGTTGTGAGAAAAATGATCTACTCTGTG
TAACCAAAATTGAGAATTGAAATCAAAGTGTTGCAAATAATAGATGGTAG
TTGGAGCAGGTTGGAGAGTGAGCAATATTTTTGGCATTCTtgcattttga
tgttatttttagGAGATTTGCTTTGATATCTCGTAAAATTACTATGATTT
TATGACAAATTCTAGAATTTGAATCTTCTTAAGCATTACATTCATCTTCT
TTTATACCAAGAActgattatttttcatttcatttcattttaagattttt
agaattttattttatacaCCCAGGACAGACTGTAGAATATTAAAAATCAG
AGTTATCAAAgttattttactttcttttcttAAGTAATATAAGAGAAAAG
ATAAGAAAGGAGAAAGAATTTTGCCTGCGAACGCTCAAAATACCAGTGAA
GTCCCCTGATGAAT Run BLAST on NCBI transcript from alignment at sc0000241:280642..284097- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016550 ID=TCONS_00016550|Name=TCONS_00016550|organism=Clytia hemisphaerica|type=transcript|length=3456bp|location=Sequence derived from alignment at sc0000241:280642..284097- (Clytia hemisphaerica)
GGGCGAGCCTAGAATTTCTTTTGATTTATTACATAAAAGAAATCAAAAGA
CTTTAACGACCAATTACCGACAAATTCATCTCCTGTCTTTCTTTATACCT
CCATGCTATGGTAAAGTTACTTTACTAAAACAAAAATCCGAAACGGTATG
AAGGCCGAAAACTTGGATCAAAGAATAGACAAATTTAAAATCAAAATTTT
GGTTCGACGAAATAGTCTTTAACAATGTTATAGAATTTACATGATATTAT
AGTGCTCACCGGGAGCTATCAAAAATAATAATCTACAAAACATAATATCA
AAAAAATAAATCAAATAGCTATTAATTATACTTTCTATGTCTATCAAACC
ATATTCCTATCTACTATGAATTATTTTCAAAATAATTTGCTTTTATGATC
TCTAACAGTGATTCCTTTCCTAAAATAGATTTTATCGGAGTGTAAAAATC
TTTTTAAATTAATGCTCAATTCATTTCCAACCCTACCTGACCATTATATC
TAAATATTTACATTACTAGTTACGATTCAAAACAAATCTATTCTTAAATA
AACTAAAAATTTTTCAATACAGTTGTTTCGTTTTTCAAAATGTTTTTATT
TAAATGATAGAAATTTCTTTCTGTGTGTTTGTATGTCCGTTCGTTAATTT
GGTTCGCATTGGTGGTGATGATTTTTCGTTCAGTTCTCCTTTCTTGTCTG
AAGAAATAAGAGCTTGTGGCTTCATCTCATTGTAAACTGATTGCATGTCC
ATAAGCTTGTGTTCCAAAGTCATATGGTTTTGTGGAGGTAAGGCTAGGCA
AGCTCTTAGAATGTTTTCAATAGCAGACCGTTGCTTGAAGAGAGCGTTAA
CGACTGGTGTGCCTTTTGGGACAAGTGGAGCTTTCAACAGGTAAGAAAGT
AGCGATAAAACTGAATTGAAGGTTTGATATTCACCTGTACCTACTCGCAT
TTTGATTCGTTGACATAATTCGGTTAAGAGGACGAGATCAAGAATGATGG
GTGTCGCGAGAAGCGAGTCTTCACAGGTGTTATGAAGGACGATGGTGTTC
GTACCATGCATCATGATTTCGGACGTGTATTCGTCTAGCGCTCGTTTACT
GTCGGCGACGGTCGGTACGTACTTGATGACGACGACATGATCCGGCTTTT
CACCTTCTTTGTACAAGATACGATTGGATTCAACCATGTCATCAACGACA
TTGCTCTTGGAGATCTCTTTGGAACGGAATTGTTTTGGTGCTGAGAGATT
TTTTCCATCGTTGTTTCCAAGGTGGTTGTAACTGGCAATCGAGACTGGTT
TGATGCCTGCACCAACCAAAAAGTCGACCAGTACTGATTTGATTTTCGTT
TGACCAGATTTGAAGTCGTCACCACCGAGGAAAACATTACGTTCTTCAGC
CAGTTGAATAACACCAGGAACAAAGGTGTTCTGTGGAGATCCATTGATGT
ACGCGCAACCTTCCAGAATACTTGCCAAGGCGTAGATTGATGAAGCTGAG
ATTTCAATTTCATCACGTTTGATGGCATCCAAGATGTTTTCTGCAGTGTC
ATGAACACCAGGGATGACGTCACAGAATCGTTCAGTGTTTGCTGTCCATA
ACACGATCACCTTATCCAGTTTGTTCTTCTCCTTGAAGTCACGGATATCC
TTGCGGATGGTGGTCATTTGTTGTTCGGCCGATCCAAGCACGACATTGTC
CGCGCGGTCCGATTGGTTTGCTGCGATGAAGTCTGGACGATAGACGGCAG
GTCTTGGTTTCATGTCGTTCATGTATGGAGCAAGTTTTCGTTGGAGGTCG
AAATCAAAGACTTCAGCCCGTTGCATGGCATCAGTTATTGAGAGAGAGGA
GATGTCCCATCCATCGATAATGAGGTCATCTGGTTGTAACATTGGTAAGA
CGTCTCTCATAGCAACGAATTCTTCTCNATTGAGAGAGAGGAGATGTCCC
ATCCATCGATAATGAGGTCATCTGGTTGTAACATTGGTAAGACGTCTCTC
ATAGCAACGAATTCTTCTCCTTGCTCACTGAAGCCAAGACTGACTGTAGA
TGATTGCAATAAGGATCCAAACCAGTTCGGTTGCTTTTCACCAGATTTGG
TGTTCCATGAGATGTTGTGTTTGTTGGCAAGGTAAGCTCCAGTGAAAGTG
GTACCATTGTTGCCACCCCATCCCACAAGCATGACTCCAACCTTAGGGAC
ATGTCGTTGGACTTTGAATTTAACTTCAACATCGACAGGTGTGACGGTGA
TCCTTTGAGGTGTTGGACGTTCGACTTTGGTCGTTTGGTAAATGTATTTG
GATTGGATCTCGTCAGAGGTGTATTCCACGTTGCAACTGTTTACTTCAAT
CATGATGATTCTGTAGAGAAAAAAAGAAAAACTAGGTTAGGTATTGAAAA
TATAAAAAACTTCGTAAGTAAGAATCACAAAAAGTCCTTAGAAAATTTAA
GACTATTCCAAAGAGTTTATACAAAAACTTATCGAGGTGAAATACTCAAA
GCTATGCAGATATTTTTAAAACATGTACACACCTTCAAAGATGTTCTAGA
TAAGTCAAGTCTACCTTTCCTCTTTTCTCTTTCAACTTTTAAACCAAGTG
AATTTTTTATGTGAGATTTTATCAGAAATTTTCTACCTTTTATAGTTTTC
GAAACTAAAGCTATTGTGCAAGAGAGCTCAAATGAAACCCTGTTATTTCA
GGTTGTACAGATCTTTCAACAGGACTTTCAATTCACATAGAAGGGTTGCC
TCGCAATTTCCCAACATGACAGTGTAATACAATATAAAAGCATGAAATTA
TAAAAGTCGAAAAAAGAATTTCCTCAGAATTTTGACCTTTTAATGGGCTC
TTTGACCTTTTAAGGATAAAGTTTGAATTTTCAAAGTAAACAAATGTATG
AAATTAGATATGATAAATTTAGCCTAGGAGGTGTGCTGTAGGTAACTTGT
ACAATATCCCAATTTTTATCAGAAAGGATTTTTACAACAGTGAGGCAGAT
TAGAAGTGCATTTCAGTTGTGAGAAAAATGATCTACTCTGTGTAACCAAA
ATTGAGAATTGAAATCAAAGTGTTGCAAATAATAGATGGTAGTTGGAGCA
GGTTGGAGAGTGAGCAATATTTTTGGCATTCTTGCATTTTGATGTTATTT
TTAGGAGATTTGCTTTGATATCTCGTAAAATTACTATGATTTTATGACAA
ATTCTAGAATTTGAATCTTCTTAAGCATTACATTCATCTTCTTTTATACC
AAGAACTGATTATTTTTCATTTCATTTCATTTTAAGATTTTTAGAATTTT
ATTTTATACACCCAGGACAGACTGTAGAATATTAAAAATCAGAGTTATCA
AAGTTATTTTACTTTCTTTTCTTAAGTAATATAAGAGAAAAGATAAGAAA
GGAGAAAGAATTTTGCCTGCGAACGCTCAAAATACCAGTGAAGTCCCCTG
ATGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016550-exon-sc0000241-1575043694:282208..284097 | TCONS_00016550-exon-sc0000241-1575043694:282208..284097 | Clytia hemisphaerica | exon |
| TCONS_00016550-exon-sc0000241-1575043694:280642..282115 | TCONS_00016550-exon-sc0000241-1575043694:280642..282115 | Clytia hemisphaerica | exon |
| TCONS_00016550-exon-sc0000241-1510915933:282208..284097 | TCONS_00016550-exon-sc0000241-1510915933:282208..284097 | Clytia hemisphaerica | exon |
| TCONS_00016550-exon-sc0000241-1510915933:280642..282115 | TCONS_00016550-exon-sc0000241-1510915933:280642..282115 | Clytia hemisphaerica | exon |
| TCONS_00016550-exon-sc0000241-1491911889:282208..284097 | TCONS_00016550-exon-sc0000241-1491911889:282208..284097 | Clytia hemisphaerica | exon |
| TCONS_00016550-exon-sc0000241-1491911889:280642..282115 | TCONS_00016550-exon-sc0000241-1491911889:280642..282115 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000241 | supercontig | sc0000241:280642..284097 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004512 | inositol-3-phosphate synthase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008654 | phospholipid biosynthetic process |
| GO:0006021 | inositol biosynthetic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006021 |
inositol biosynthetic process |
| biological_process |
GO:0008654 |
phospholipid biosynthetic process |
| molecular_function |
GO:0004512 |
inositol-3-phosphate synthase activity |
Blast
BLAST of TCONS_00016550 vs. Swiss-Prot (Human)
Match: INO1 (Inositol-3-phosphate synthase 1 OS=Homo sapiens GN=ISYNA1 PE=1 SV=1) HSP 1 Score: 612.068 bits (1577), Expect = 0.000e+0 Identity = 323/544 (59.38%), Postives = 402/544 (73.90%), Query Frame = -3
Query: 627 VNSCNVEYTSDEIQSKYIYQTTKVERPTPQRITVTPVDVEVKFKVQRHVPKVGVMLVXXXXXXXXXXXGAYLANKHNISWNTKSGEKQPNWFGSLLQSSTVSLGFSEQGEE-FVAMRDVLPMLQPDDLIIDGWDISSLSITDAMQRAEVFDFDLQRKLAPYMNDMKPRPAVYRPDFIAANQSDRADNVVLGSAEQQMTTIRKDIRDFKEKNKLDKVIVLWTANTERFCDVIPGVHDTAENILDAIKRDXXXXXXXXXXXXXXXXEGCAYINGSPQNTFVPGVIQLAEERNVFLGGDDFKSGQTKIKSVLVDFLVGAGIKPVSIASYNHLGNNDGKNLSAPKQFRSKEISKSNVVDDMVESNRILYKEGEKPDHVVVIKYVPTVADSKRALDEYTSEIMMHGTNTIVLHNTCEDSLLATPIILDLVLLTELCQRIKMRVGTG-EYQTFNXXXXXXXXXLKAPLVPKGTPVVNALFKQRSAIENILRACLALPPQNHMTLEHKLMDMQSVYNEMKPQALISSDKKGELNEKSSPPMRTKLTNGHTN 2252
V S +V Y + I+++Y Y+TT+V R + V P F+ R VP++GVMLVGWGGNNG+T T A LAN+ +SW T+SG K+ N++GSL Q+ TVSLG +G+E FV VLPM+ P+DL+ DGWDISSL++ +AM+RA+V D+ LQ +L P+M ++PRP+VY P+FIAANQS RADN++ GS QQ+ IR+DIRDF+ LDKVIVLWTANTERFC+VIPG++DTAEN+L I+ ++ + + GCA++NGSPQNT VPG ++LA + VF+GGDDFKSGQTK+KSVLVDFL+G+G+K +SI SYNHLGNNDG+NLSAP QFRSKE+SKSNVVDDMV+SN +LY GE+PDH VVIKYVP V DSKRALDEYTSE+M+ GTNT+VLHNTCEDSLLA PI+LDL LLTELCQR+ E QTF+ VLSLLS+L KAPLVP G+PVVNALF+QRS IENILRAC+ LPPQNHM LEHK+ + P A LN+K P T G N
Sbjct: 9 VESPDVVYGPEAIEAQYEYRTTRVSREG-GVLKVHPTSTRFTFRTARQVPRLGVMLVGWGGNNGSTLTAAVLANRLRLSWPTRSGRKEANYYGSLTQAGTVSLGLDAEGQEVFVPFSAVLPMVAPNDLVFDGWDISSLNLAEAMRRAKVLDWGLQEQLWPHMEALRPRPSVYIPEFIAANQSARADNLIPGSRAQQLEQIRRDIRDFRSSAGLDKVIVLWTANTERFCEVIPGLNDTAENLLRTIELGLEVSPSTLFAVASILE-GCAFLNGSPQNTLVPGALELAWQHRVFVGGDDFKSGQTKVKSVLVDFLIGSGLKTMSIVSYNHLGNNDGENLSAPLQFRSKEVSKSNVVDDMVQSNPVLYTPGEEPDHCVVIKYVPYVGDSKRALDEYTSELMLGGTNTLVLHNTCEDSLLAAPIMLDLALLTELCQRVSFCTDMDPEPQTFHPVLSLLSFLFKAPLVPPGSPVVNALFRQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRVGPVAATYP----MLNKKGPVPAATNGCTGDAN 546
The following BLAST results are available for this feature:
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