TCONS_00016558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016558
Unique NameTCONS_00016558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016558 ID=TCONS_00016558|Name=TCONS_00016558|organism=Clytia hemisphaerica|type=transcript|length=547bp
GGAATACGCTTCAAATGGTGAAACAGGTACTAAAAAACTCATGCTTTCAA
GCTAGAATTTATAACCCACAGATGAAATCTTTTAGCGAAGTCCCCAATTA
TGCACAATTTGAAAGCACTTTAGAAACTGTGTTAAGAACCATGAAGGGAG
GACACACGATTACAGATGTGGAAGACTTTGCCTTGGACATGAAAGAAAAA
TGTAACACAATTTCTGAAGAGAAGGAAGttactttattttttagaatGGT
GCCGTCCAATTTAGCACATGACCAATTTAAACATATTCCAACAAATGGAC
CTTGCTCTGTCATCATTGCATTATTTTGCATGCTCTTGTCAGACACATTG
GAAGTTCCAGAACTATCCTGGTTACCCATACACAGATTTGTTATTGTTGC
AAAAGATGATATTgttaacaataacttttattcGCAGTCTCACAGCATGA
AAACAATCCgtgatttgattttaaatccAAATTTCAATCGCTTTCAATAC
AATAAGGAAACTTTGcttacaaatttccagtttccTTCAACTATGAA
Run BLAST on NCBI

protein sequence of TCONS_00016558-protein

>TCONS_00016558-protein ID=TCONS_00016558-protein|Name=TCONS_00016558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
NTLQMVKQVLKNSCFQARIYNPQMKSFSEVPNYAQFESTLETVLRTMKGG
HTITDVEDFALDMKEKCNTISEEKEVTLFFRMVPSNLAHDQFKHIPTNGP
CSVIIALFCMLLSDTLEVPELSWLPIHRFVIVAKDDIVNNNFYSQSHSMK
TIRDLILNPNFNRFQYNKETLLTNFQFPSTM
Run BLAST on NCBI

transcript from alignment at sc0000241:170470..171016

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016558 ID=TCONS_00016558|Name=TCONS_00016558|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at sc0000241:170470..171016 (Clytia hemisphaerica)
TTCATAGTTGAAggaaactggaaatttgtaagCAAAGTTTCCTTATTGTA
TTGAAAGCGATTGAAATTTggatttaaaatcaaatcacGGATTGTTTTCA
TGCTGTGAGACTGCgaataaaagttattgttaacAATATCATCTTTTGCA
ACAATAACAAATCTGTGTATGGGTAACCAGGATAGTTCTGGAACTTCCAA
TGTGTCTGACAAGAGCATGCAAAATAATGCAATGATGACAGAGCAAGGTC
CATTTGTTGGAATATGTTTAAATTGGTCATGTGCTAAATTGGACGGCACC
attctaaaaaataaagtaaCTTCCTTCTCTTCAGAAATTGTGTTACATTT
TTCTTTCATGTCCAAGGCAAAGTCTTCCACATCTGTAATCGTGTGTCCTC
CCTTCATGGTTCTTAACACAGTTTCTAAAGTGCTTTCAAATTGTGCATAA
TTGGGGACTTCGCTAAAAGATTTCATCTGTGGGTTATAAATTCTAGCTTG
AAAGCATGAGTTTTTTAGTACCTGTTTCACCATTTGAAGCGTATTCC

Coding sequence (CDS) from alignment at sc0000241:170470..171016

>TCONS_00016558 ID=TCONS_00016558|Name=TCONS_00016558|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000241:170470..171016 (Clytia hemisphaerica)
CATAGTTGAAggaaactggaaatttgtaagCAAAGTTTCCTTATTGTATT
GAAAGCGATTGAAATTTggatttaaaatcaaatcacGGATTGTTTTCATG
CTGTGAGACTGCgaataaaagttattgttaacAATATCATCTTTTGCAAC
AATAACAAATCTGTGTATGGGTAACCAGGATAGTTCTGGAACTTCCAATG
TGTCTGACAAGAGCATGCAAAATAATGCAATGATGACAGAGCAAGGTCCA
TTTGTTGGAATATGTTTAAATTGGTCATGTGCTAAATTGGACGGCACCat
tctaaaaaataaagtaaCTTCCTTCTCTTCAGAAATTGTGTTACATTTTT
CTTTCATGTCCAAGGCAAAGTCTTCCACATCTGTAATCGTGTGTCCTCCC
TTCATGGTTCTTAACACAGTTTCTAAAGTGCTTTCAAATTGTGCATAATT
GGGGACTTCGCTAAAAGATTTCATCTGTGGGTTATAAATTCTAGCTTGAA
AGCATGAGTTTTTTAGTACCTGTTTCACCATTTGAAGCGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009252XLOC_009252Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016558-proteinTCONS_00016558-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016558-exon-sc0000241-1491911889:170470..171016TCONS_00016558-exon-sc0000241-1491911889:170470..171016Clytia hemisphaericaexon
TCONS_00016558-exon-sc0000241-1510915933:170470..171016TCONS_00016558-exon-sc0000241-1510915933:170470..171016Clytia hemisphaericaexon
TCONS_00016558-exon-sc0000241-1575043694:170470..171016TCONS_00016558-exon-sc0000241-1575043694:170470..171016Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000241supercontigsc0000241:170470..171016 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.102356	0.237691	0	0	0	0.134947	0	0	0	0	0	0.837697	0.724964	1.01323	0.895467	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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