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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016562 ID=TCONS_00016562|Name=TCONS_00016562|organism=Clytia hemisphaerica|type=transcript|length=1027bp
ggatttcagacAAATCCGTCAAATTTTATGCCCGCTAAAATTTCTTACCT
TAACTAAGGCATCCTGCCTGATAATGATAATcttccaaaaattttaatta
agtTCGAAATACGAGACACAATCTacagaaaaaattataaaacattCTTG
TTTCTTCTTCGCCGATTAAGAAGTACTTGGACTAACAAAGAATCAGGCAG
AAAAATCTATTTTGTATATTGCTGtatattatgaaaaattcactgtGGTC
ATATAAGAGCAATGTTCTAGTGACCAAAATCTACATTGGAATAGAGTACT
TTGTATCCGTCGAGAGATCATCAAAATTGATTGATAATTTTTCCATTAAA
TTAATGAGGATTTTGTTTGTCACTTCCACATCAACCATAGAGTTATGCAA
TCCTTTAGCCTCGATATTCAAATGCTCTGCTACGTCCTTAAGCCTGTGAC
GTGCTAGTTCAGGTTTAGGATAAGCAGCCCTACTCATTTTAAGAGTATCA
AGAAGTTTGAAATCCATCTCCTTCAGTAAATCAATCCAGGGCTTTCCTTC
GTCTTCATTGTTTCCGAGCCTGGTAAAAGCTGCAACTAAAAACTTCCAAT
CAAAACGTACTTTATGTCCAAAGACTAACTTGGCACCTTCGAAAAACTTC
AATATTTCTTCAGCATGTTCGTGAAACGGTTTCTgttttgccaagaaatc
aggGTGAAGATTGTGAATCTCATATGCTTTTGATTGAAGCTGATAATCAC
GATCGAGCTCAGGATTGATATATTCATCAAAAGTCTCATGGTGAGTTTTC
GAGAAATGAACTTTGATCATTGAAAGTTGCACAATCCTGTCATTTTGAGA
ATCAAATCCAGTTGTCTCTGTATCAAAGACAATGTATGGAAAACCATCTT
CAGTTTCAACCTCTTGGCAATCGTTTAGTGGTCGTTTTTGGCCAGCTTGA
TGTTGGATAAAATTCATGGAAGTAGATTGATTCGCCATGTTTGCTATTAT
TCACACAATACTCCTGCAATCAATCAA Run BLAST on NCBI protein sequence of TCONS_00016562-protein >TCONS_00016562-protein ID=TCONS_00016562-protein|Name=TCONS_00016562-protein|organism=Clytia hemisphaerica|type=polypeptide|length=235bp
MANQSTSMNFIQHQAGQKRPLNDCQEVETEDGFPYIVFDTETTGFDSQND
RIVQLSMIKVHFSKTHHETFDEYINPELDRDYQLQSKAYEIHNLHPDFLA
KQKPFHEHAEEILKFFEGAKLVFGHKVRFDWKFLVAAFTRLGNNEDEGKP
WIDLLKEMDFKLLDTLKMSRAAYPKPELARHRLKDVAEHLNIEAKGLHNS
MVDVEVTNKILINLMEKLSINFDDLSTDTKYSIPM Run BLAST on NCBI transcript from alignment at sc0000241:224334..225360 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016562 ID=TCONS_00016562|Name=TCONS_00016562|organism=Clytia hemisphaerica|type=transcript|length=1027bp|location=Sequence derived from alignment at sc0000241:224334..225360 (Clytia hemisphaerica)
TTGATTGATTGCAGGAGTATTGTGTGAATAATAGCAAACATGGCGAATCA
ATCTACTTCCATGAATTTTATCCAACATCAAGCTGGCCAAAAACGACCAC
TAAACGATTGCCAAGAGGTTGAAACTGAAGATGGTTTTCCATACATTGTC
TTTGATACAGAGACAACTGGATTTGATTCTCAAAATGACAGGATTGTGCA
ACTTTCAATGATCAAAGTTCATTTCTCGAAAACTCACCATGAGACTTTTG
ATGAATATATCAATCCTGAGCTCGATCGTGATTATCAGCTTCAATCAAAA
GCATATGAGATTCACAATCTTCACcctgatttcttggcaaaacAGAAACC
GTTTCACGAACATGCTGAAGAAATATTGAAGTTTTTCGAAGGTGCCAAGT
TAGTCTTTGGACATAAAGTACGTTTTGATTGGAAGTTTTTAGTTGCAGCT
TTTACCAGGCTCGGAAACAATGAAGACGAAGGAAAGCCCTGGATTGATTT
ACTGAAGGAGATGGATTTCAAACTTCTTGATACTCTTAAAATGAGTAGGG
CTGCTTATCCTAAACCTGAACTAGCACGTCACAGGCTTAAGGACGTAGCA
GAGCATTTGAATATCGAGGCTAAAGGATTGCATAACTCTATGGTTGATGT
GGAAGTGACAAACAAAATCCTCATTAATTTAATGGAAAAATTATCAATCA
ATTTTGATGATCTCTCGACGGATACAAAGTACTCTATTCCAATGTAGATT
TTGGTCACTAGAACATTGCTCTTATATGACCacagtgaatttttcataat
ataCAGCAATATACAAAATAGATTTTTCTGCCTGATTCTTTGTTAGTCCA
AGTACTTCTTAATCGGCGAAGAAGAAACAAGaatgttttataattttttc
tgtAGATTGTGTCTCGTATTTCGAacttaattaaaatttttggaagATTA
TCATTATCAGGCAGGATGCCTTAGTTAAGGTAAGAAATTTTAGCGGGCAT
AAAATTTGACGGATTTgtctgaaatcc Coding sequence (CDS) from alignment at sc0000241:224334..225360 >TCONS_00016562 ID=TCONS_00016562|Name=TCONS_00016562|organism=Clytia hemisphaerica|type=CDS|length=708bp|location=Sequence derived from alignment at sc0000241:224334..225360 (Clytia hemisphaerica)
ATGGCGAATCAATCTACTTCCATGAATTTTATCCAACATCAAGCTGGCCA
AAAACGACCACTAAACGATTGCCAAGAGGTTGAAACTGAAGATGGTTTTC
CATACATTGTCTTTGATACAGAGACAACTGGATTTGATTCTCAAAATGAC
AGGATTGTGCAACTTTCAATGATCAAAGTTCATTTCTCGAAAACTCACCA
TGAGACTTTTGATGAATATATCAATCCTGAGCTCGATCGTGATTATCAGC
TTCAATCAAAAGCATATGAGATTCACAATCTTCACcctgatttcttggca
aaacAGAAACCGTTTCACGAACATGCTGAAGAAATATTGAAGTTTTTCGA
AGGTGCCAAGTTAGTCTTTGGACATAAAGTACGTTTTGATTGGAAGTTTT
TAGTTGCAGCTTTTACCAGGCTCGGAAACAATGAAGACGAAGGAAAGCCC
TGGATTGATTTACTGAAGGAGATGGATTTCAAACTTCTTGATACTCTTAA
AATGAGTAGGGCTGCTTATCCTAAACCTGAACTAGCACGTCACAGGCTTA
AGGACGTAGCAGAGCATTTGAATATCGAGGCTAAAGGATTGCATAACTCT
ATGGTTGATGTGGAAGTGACAAACAAAATCCTCATTAATTTAATGGAAAA
ATTATCAATCAATTTTGATGATCTCTCGACGGATACAAAGTACTCTATTC
CAATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016562-exon-sc0000241-1491911889:224334..225360 | TCONS_00016562-exon-sc0000241-1491911889:224334..225360 | Clytia hemisphaerica | exon |
| TCONS_00016562-exon-sc0000241-1510915933:224334..225360 | TCONS_00016562-exon-sc0000241-1510915933:224334..225360 | Clytia hemisphaerica | exon |
| TCONS_00016562-exon-sc0000241-1575043694:224334..225360 | TCONS_00016562-exon-sc0000241-1575043694:224334..225360 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000241 | supercontig | sc0000241:224334..225360 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013520 | Exonuclease_RNaseT/DNA_pol3 |
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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