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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016579 ID=TCONS_00016579|Name=TCONS_00016579|organism=Clytia hemisphaerica|type=transcript|length=1928bpRun BLAST on NCBI protein sequence of TCONS_00016579-protein >TCONS_00016579-protein ID=TCONS_00016579-protein|Name=TCONS_00016579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp MAAGFFARAARSGKSGAKIFSNSRYANSSRSKATTSLQRKALSTKSNRTSRun BLAST on NCBI transcript from alignment at sc0000243:224689..244749+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016579 ID=TCONS_00016579|Name=TCONS_00016579|organism=Clytia hemisphaerica|type=transcript|length=20061bp|location=Sequence derived from alignment at sc0000243:224689..244749+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000243:224689..244749+ >TCONS_00016579 ID=TCONS_00016579|Name=TCONS_00016579|organism=Clytia hemisphaerica|type=CDS|length=9870bp|location=Sequence derived from alignment at sc0000243:224689..244749+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016579 vs. Swiss-Prot (Human)
Match: OXA1L (Mitochondrial inner membrane protein OXA1L OS=Homo sapiens GN=OXA1L PE=1 SV=3) HSP 1 Score: 257.684 bits (657), Expect = 7.963e-78 Identity = 122/295 (41.36%), Postives = 185/295 (62.71%), Query Frame = 3
Query: 564 SELGLGGYTPVGAITNALDFLHLTCGMPWWGAIVAGTIVFRALVFPLMIKGQINSAKLSAIKPELDRLQENLKEKSNFQNPMMKAQASIELQQLFQKHDCHPAKALITPLIQLPLFVSFFIALRKMSYLPVEALKTGGVLWFPDLTAADPYFILPLLCAGTMLATIETGAEMGMQANDQAKTMKNVFRGMCVVMVPLTYHFPTAIFTYWFTSNILSLVQVGVMRVPGVKEYFGIPPTIVPKIDPSVKQGSFIENLRAGYKGAIEAAHVQHEEKMKEREYKSSLKNTYEETFDYNP 1448
+ELGLG YTPVG I N L+F+H+ G+PWWGAI A T+ R L+FPL++ GQ +A++ PE+ + ++E + + +AS E+ +KH K LI P+ Q P+F+SFFIALR+M+ LPV +L+TGG+ WF DLT +DP +ILPL TM A +E GAE G+Q++D + M+NV R M ++ +P+T HFPTA+F YW +SN+ SLVQV +R+P V+ IP +V +D + F+E+ + G+K A ++ E+ + + + + +TF +NP
Sbjct: 112 AELGLGSYTPVGLIQNLLEFMHVDLGLPWWGAIAACTVFARCLIFPLIVTGQREAARIHNHLPEIQKFSSRIREAKLAGDHIEYYKASSEMALYQKKHGIKLYKPLILPVTQAPIFISFFIALREMANLPVPSLQTGGLWWFQDLTVSDPIYILPLAVTATMWAVLELGAETGVQSSD-LQWMRNVIRMMPLITLPITMHFPTAVFMYWLSSNLFSLVQVSCLRIPAVRTVLKIPQRVVHDLDKLPPREGFLESFKKGWKNAEMTRQLREREQRMRNQLELAARGPLRQTFTHNP 405 The following BLAST results are available for this feature:
BLAST of TCONS_00016579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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