TCONS_00016662 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016662
Unique NameTCONS_00016662
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1099

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016662 ID=TCONS_00016662|Name=TCONS_00016662|organism=Clytia hemisphaerica|type=transcript|length=1099bp
tttcatcaTTAGAGACGAGCACTGCCTAATATACAGaaattgatcAATCG
AGAAAGAATGGCAAGCCAAAATGACGACAATAACCTTACTCCAAGAAAAA
GCAAACCTTCTGCCATAGAGGTGAAGAATGGATGTATCTATGTAGGAGGC
AAAAGAACAACGAATTGGAGCCCAAGAATAATCGGGGCAGTGTGCGACGA
AGGAGATACAATCGAGGGGTATATCTTTGAGCACCCACCATCAACCGTCA
CTGACCCAGCAAAGAAAAAGCGATGGAGGTCGTACCTGACTAACGAAAAC
TTGTCCAGCTCATGGGGGATCATGAACAATCTGGAATACAGAGAGTACCT
CAAGACAATACAGACAATAAAAAATACAGCCGATAAATATTTGACTGAAT
ACTTTGACCATCTAACGGAACAGTATGACAATTCACCAGAATGTATCAAG
CTGATCAAACTAAAGTGGCAAGGAAAACAAACGAATGGTTCTTTCGGTTA
TTGGACAGAAAAACGTGGTACCAAGGTGGTGCggttttttaaaaaagttg
gCAATGAAGTTGTGGAGATAGATGAAGAACAATCAGGCTTCGTGGTAATC
GGAGAATTCAATAGGAGCCTTGTCCTCAGTGaaaatttgaatggaaGTTT
CAAATCTCTCGTTGAGGTGGTTCAGAAGAGTTCTGGCTCAAACTTTCCTG
CCGCTGTGCAAATCTTTGGTGCAGCATTTATGGCACTCAACTTCTCATCA
ATAATGAAAACTTTCGGCTTCGTACCGATGCCTATTGTCATCGGGCCCAC
TGGTACGACGAAATCAACGATTACAAAACTAGTGATGCGGTCTGTTGGTG
TCACCAGTAACATCTATGATCCTACATACGCTTCAATGGCAGAGTTGGTT
GCATCAGCCCCGATCCCTCTGCTGTGGGAAGACGCTgagaatttttctgt
tttgggAGAGATGGCTATGCTTGTATACAATAACtcaCAACGCTCAAAAT
GCGATAAAGGTGCCGTACAGGCAGGTCCACCCTTGACAATGCCGGTATCG
ACAAcaaatggttgttttttaaagaaagttacCGATCCGGTTTTTCATG
Run BLAST on NCBI

transcript from alignment at sc0000246:329408..336284+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016662 ID=TCONS_00016662|Name=TCONS_00016662|organism=Clytia hemisphaerica|type=transcript|length=6877bp|location=Sequence derived from alignment at sc0000246:329408..336284+ (Clytia hemisphaerica)
tttcatcaTTAGAGACGAGCACTGCCTAATATACAGGTAAAGAATTATTt
cctttttcgaattttccGCCCGTTTATGAAAAAAGCCAGTCGTGATAAAA
CCTGAGACTCCGAAAAAAGAATTCCTACTGTGAAAATGTTGTTCGTGTTT
TACGGAGCCCTTAATTAGATTCATCCACAGCTTGCCCATCTGCCATCTTT
TAAACGCTAATTAGATCTTTCAAACAGACACAGAAAGCTTACTTGACTCC
CACCTCGTTCTTTCTCTAAAAGATATCAGCCTGTGCTGAGAGGTTTTGAT
TACTTATTTTTCAGAAAGGTAAATTCATTGATGATTACTCTCTCATTACT
TCCCTTCTCCTAAAGAACCTTTAAAAGTcttttatatagtttttcgagag
cttccgaatggtatacttgataatgtctgaaaataagttggaagttttca
aaaaatttctcccttagggttttgcctggggaaaaaagaaatgtcccaaa
gaagggatgttccaccagtgggattttaggggattttttcctgaggcata
accattaTACAgtgaaggtctggagaaagtttcagctagttCTCatgttt
tcccgtaaattatgctaaacgaccacACTGAAATAGCaagtctgaaaatt
tcaatttcattttttttagaaattgatcAATCGAGAAAGAATGGCAAGCC
AAAATGACGACAATAACCTTACTCCAAGAAAAAGGTTTCTTACTACACTT
TATTTACactttttccttaaaatcttCATAGACAACCCGACTTATCccag
ggtccacttaaagcttttttatagactggatggtgcGATCACGttttcac
tggactcagcgtcagtggcgtggtggcaggggggaccagggggccaggcc
cccccccagcggagcccttttgGGAAGGAGCGCCAAAAATTTAGGGGTGC
CAAGAAGGattttcaggcgcccatatcgaaagattgacaaatgaaaaaaa
caaaaaaagcgcccctcatcacctcaaaattTTCTGCCTCGCTTCGCTCA
CACACTCTCTTTTTTGTGTCCATAAATttagaggggcgccaaaaacagaa
aaatctttaaaaagggcgctatgtttgccttggccaccccagagaaattt
tcccaccacgccactgctcAGCGTCAtaagaaattatcaaaaagcaaagc
tcagccagaagtagactctagtctagtactctaggggctgagttaggtcc
cgtatgcacATCGgtgtatagtcattttttcttttgatcatgaaagtata
gtccttgaagagtcagaaaacgtgtgtggcgttatttggatcaggcacaa
atttccataatNacttttggttccagatttgcgtggctgtaacatttgat
tggcttacttaatttacttgaaattttcggagggtcttccctaccgttca
aataataaaattcaggaaaagtttttttttctacgtgaatttcgaaatcc
ataatggtggattcaaaattttatttcgtcacatgggctcttaggctctg
ctagcctaagaaaaatatcttttgagcttaaaaccctgcatattatatac
gaatcgatcagaaattttatgctgattaagaaaaaggtcagaaccatggt
ctgaaaattttgttatcaagagatacgaaatacttacgttttctaagttt
tgaagcTCGAGATAGCAAACTTTTCATAGTTCTGAcctttgaaaatctaa
aatccgccattatggaaatttgtgcctgatccaaataacgccacacacgt
tttctgactcttcaaggactaactttcatgatcaaaataaaaaatgacta
tacgccgaagTGCATACGACGgcatacgagacctaactcagcccctagag
tatagGTCATCTTTTgcattttttattgttaattcATATCTTTATCTTTC
AGCAAACCTTCTGCCATAGAGGTGAAGAATGGATGTATCTATGTAGGAGG
CAAAAGAACAACGAATTGGAGCCCAAGAATAATCGGGGCAGTGTGCGACG
AAGGAGATACAATCGAGGGGTATATCTTTGAGCACCCACCATCAACCGTC
ACTGACCCAGCAAAGAAAAAGTATGCCAAATTAAATACTTTACTTTGAAG
TATTAGATACTCCGAATTTCTTTGGGCAGGGGAACAAGTCTAACATGGTA
GCATTTTAAAGCTCTGTCCCttggcttcaaaaaaatcactttttgttCAT
CAGGAGCTACtaccaaaaattttcaaaatttagttcTTTTCAAAAAGGGC
TCGTTCAAATACAAgctgtttttttggaaaaactcgagaaattcgcgaaa
tataatcttcctgaaaattgaaattgaagtttGTATTGCGCAATTTAATT
ACCACTTCTTCTAGGCGATGGAGGTCGTACCTGACTAACGAAAACTTGTC
CAGCTCATGGGGGATCATGAACAATCTGGAATACAGAGAGTACCTCAAGA
CAATACAGACAATAAAAAATACAGCCGATAAATATTTGACTGAATACTTT
GACCATCTAACGGAACAGTATGACAATTCACCAGAATGTATCAAGCTGAT
CAAACTAAAGGTATGTTAATTTCATAGGTGCAAGGCCTGAAGTTCCAAAA
TATCCACCTGACAATCTTTTATCGATTTTCAGGGTTAAAGTTTtgcatca
aaaattatcaaaaagcaaagttcagccaggaGTGGAATCTAGTCCAGGCT
TTAcaaaattctgttttttctCGCATCTTCTCTACCGTGTTTATAAAATA
TGCTGACAAGGCAATATTTCCGACTATCAATTTTCAcacgattttgaaaa
aaaaaNttcaaaaaaatcactttttgttCATCAGGAGCTactatcaaaaa
ttttcaaaatttagttcTTTTCAAAAAGGGCTCGTTCAAATACAAgctgt
tttttttggaaaaactcgagaaattcgcgaaatataatcctcctgaaaat
tgaaattgaaaattgaagtttGTTGCGCAATTTAATTACCACTTCTTCTA
GGCGATGGAGGTCGTACCTGACTAACGAAAACTTGTCCAGCTCATGGGGG
ATCATGAACAATCTGGAATACAGAGAGTACCTCAAGACAATACAGACAAT
AAAAAATACAGCCGATAAATATTTGACTGAATACTTTGACCATCTAACGG
AACAGTATGACAATTCACCAGAATGTATCAAGCTGATCAAACTAAAGGTA
TGTTAATTTCATAGGTGCAAGGCCTGAAGTTCCAAAATATCCACCCTCTG
ACAATCTTTTATCGATTTTCAGGGTTAAAGttttgcataaaaaattatca
aaaagcaaagttcagccaggaGTGGAATCTAGTCTAGGCTTTACGAAATT
CTGTTTTTTCTCGCATCTTCTCTACCGTGTTTATAAAATATGCTGACAAG
GCAATATTTCCGACTATCAATTTTCAcacgattttgaaaaataaaaccaa
GTTTTAGATATGACTGACCATCAAAGgatattttaaggaaaaaaatacGG
AAAGGGCGTCAATCCTCCTTCAGTCCTctaccaatgaagtataagcccga
agggctagaagtcaatctccttcgtaggatttgaagccaacaaatcctac
caaagttgcgcggccttgaggtttttacacaaatgacagattgaaactaa
aatttaccgctaaatttcgaaataatatcaatcgtaaacataGGAATTAC
TAGactcaatctgtcgtcaaaaatacggcgcatcttttaaggcttcactt
tttcttgcctgagaaaggttagagattgaactctagtcctttcgggcttt
aaactcaatgtccTCTACCTGTTGGGGGTTAATAGtatacactcattttt
ttataagcataacgtttataagcatactgaagctcaaatttccagaaaaa
ttaagcatattatgctaagcataccttgagactcagccaaagaaattttt
agaatcataatttccaaaacttcagaaaataacagaagaatgaagaagag
aactacaaacaaaattcgaaaaattggtgattttattttgtttaatctct
tataaataacacaacttGGTCTCTTAAGAATGTACACTTTCTAAACTTAC
ATAACTTTTTATCCCTCTATGgttaagcatagtgagcttcagccgaaatt
taccgtatgcttataaaaaaatgagtgtaaatacagaccttcctggtgtg
tttggggaaTTAAGGCTTACGATCCTGACTCTTTAGGGATTTTCAGATAG
ACCTGGTGTTTTACTGGTTTCACTTCGTTTTTGTCTTGGTGGGTATTGAC
TTCTCTTAATTAGGGAGCTATTTTTTCTACTGATAGAATTCTCTTCCTTT
TACAGTGGCAAGGAAAACAAACGAATGGTTCTTTCGGTTATTGGACAGAA
AAACGTGGTACCAAGGTGGTGCggttttttaaaaaagttggCAATGAAGT
TGTGGAGATAGATGAAGAACAATCAGGCTTCGTGGTAATCGGAGAATTCA
ATAGGAGCCTTGTCCTCAGTGGTATGATCGAATTTTATTATTAATTTCCA
CAAACTATATTAATCCTTNATGAAGTTGTGGAGATAGATGAAGAACAATC
AGGCTTCGTGGTAATCGGAGAATTCAATAGGAGCCTTGTCCTCAGTGGTA
ATATCGAATTTTATTATTAATCTCCACAAACTATATAATCCTTCGCGTAT
TTGTATAACATCCTTAAGATTTCGAATATCTTTCTATGTgcgtgtgtgtg
tgtgtgtactTTAGGCaaacaaactttcgcgagcagaaactttcgcgggg
acgaaaaatcgcgaaattcacgacatttacttttgcgaatttaacgaaaa
aatatttttcgcgagcatgaACTTTcgcgtaaaattgagaattttcacat
gaaaaaacgGCTTAGAgaaacaaatacttcttggattggcctGAAACATT
TGTCTTGACTTACTAGTCTTTTAGCAGACTAAAAAGTGACATAAAAATGA
CATCTTATTCAAagtttacagattttctattttgtcgagaatttttcgcg
agcataaactttcgcgaatgacctttcctagaatttttaaatactttcgT
GAAAAGGGTCgaaatagcgctccgcaacgcatatgtcataattattactt
ttcNAaatactttcgcgaaaagggtcGAAATAGCGCTCTgcaacgcatac
gtcataattattacttttcactttttttttgacatttgtacgagttgcaa
tcccacaattcaacacGGTTCAATTAAAGTtacgtgcaagttgttatata
tcttttgtcaaatgatgcaattaacgtgcaaaagagattaaggGAAAGGT
ttatgggattggaactcgtacagacacatcgagagtaatgattatgtcaa
aaataaaatctgtttttagattcagcgcggtgcgctatttgcaaaaatcg
caaaagtttttgctcgcgaaagtttgtaccaTGNCtgtttttagattcag
cgcggtgcgctatttgcaaaaatcgcaaaagtttttgctcgcgaaagttt
gtaccatgtatgtcccaaaactttggggcagcctggagacttcaaaaatt
gttcgatttggctgaaatttggcacaattgttcattgggtgaatatctgg
gggtgtttttttcattttttgaaatttttggggcctggggacgatttttt
cgtcaaaacgaggcgtGCGACGCAAGGTACCGGCTAGTTATTTATGTTGT
TTGAAAATCTGTAAATGTCGCAATCtttgaattttagaaaatttgaatgg
aaGTTTCAAATCTCTCGTTGAGGTGGTTCAGAAGAGTTCTGGCTCAAACT
TTCCTGCCGCTGTGCAAATCTTTGGTGCAGCATTTATGGCACTCAACTTC
TCATCAATAATGAAAACTTTCGGCTTCGTACCGATGCCTATTGTCATCGG
GCCCACTGGTACGACGAAATCAACGATTACAAAACTAGTGATGCGGTCTG
TTGGTGTCACCAGTAACATCTATGGTAAGGTTCCtcagatttttcattaa
aaatccaATCTCCAAAATTAATAAAGCGAAAGAATTGGCAATAAAAATGG
AAACTAcatttctttttgcttgaaGATGAGTgctatagaaaaaataataa
tatgatGAAAGATGATGCAAAGCTACAAATTCACTAAAACTAGCTCCTTT
ACTCTTTAGATCCTACATACGCTTCAATGGCAGAGTTGGTTGCATCAGCC
CCGATCCCTCTGCTGTGGGAAGACGCTgagaatttttctgttttgggAGA
GATGGCTATGCTTGTATACAATAACGTaagtttccaaaattttccattcT
AGCAGTGGCAGTTTTGATCAAAAGTTCATGGTGTTACTTGAACTTCTTCG
AGCTTACTTACAATTTATTGAAAACTTACAAAGGTTTGAGTATTTAATAA
AATACAAGAGAAAAAAGAGGCCATTTCGTTTTAATTCAGGCCTCACATAT
CAGTATAACTTTCCTCCCAACGGTATCAGAAAGAAACTCAAAATAATACG
AGAAATAATATTCTTGGGTCAAGATTTTTACAACAGCAACAGAAAGTTTA
TGCATGTCTTTGATTAAAATTTCACGAATATCTAACATTAGGGGTCAGTT
TTGCTATATGCTTAACCGGTCATGAAATAGGATTCTCGaagtaaaattat
tttctttttcagtcaCAACGCTCAAAATGCGATAAAGGTGCCGTACAGGC
AGGTCCACCCTTGACAATGCCGGTATCGACAAcaaatggttgttttttaa
agaaagttacCGATCCGGTTTTTCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009314XLOC_009314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016662-exon-sc0000246-1491911889:329408..329443TCONS_00016662-exon-sc0000246-1491911889:329408..329443Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1510915933:329408..329443TCONS_00016662-exon-sc0000246-1510915933:329408..329443Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1575043694:329408..329443TCONS_00016662-exon-sc0000246-1575043694:329408..329443Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1491911889:330077..330141TCONS_00016662-exon-sc0000246-1491911889:330077..330141Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1510915933:330077..330141TCONS_00016662-exon-sc0000246-1510915933:330077..330141Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1575043694:330077..330141TCONS_00016662-exon-sc0000246-1575043694:330077..330141Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1491911889:331360..331527TCONS_00016662-exon-sc0000246-1491911889:331360..331527Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1510915933:331360..331527TCONS_00016662-exon-sc0000246-1510915933:331360..331527Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1575043694:331360..331527TCONS_00016662-exon-sc0000246-1575043694:331360..331527Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1491911889:332459..332654TCONS_00016662-exon-sc0000246-1491911889:332459..332654Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1510915933:332459..332654TCONS_00016662-exon-sc0000246-1510915933:332459..332654Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1575043694:332459..332654TCONS_00016662-exon-sc0000246-1575043694:332459..332654Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1491911889:333813..333978TCONS_00016662-exon-sc0000246-1491911889:333813..333978Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1510915933:333813..333978TCONS_00016662-exon-sc0000246-1510915933:333813..333978Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1575043694:333813..333978TCONS_00016662-exon-sc0000246-1575043694:333813..333978Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1491911889:335245..335481TCONS_00016662-exon-sc0000246-1491911889:335245..335481Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1510915933:335245..335481TCONS_00016662-exon-sc0000246-1510915933:335245..335481Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1575043694:335245..335481TCONS_00016662-exon-sc0000246-1575043694:335245..335481Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1491911889:335667..335782TCONS_00016662-exon-sc0000246-1491911889:335667..335782Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1510915933:335667..335782TCONS_00016662-exon-sc0000246-1510915933:335667..335782Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1575043694:335667..335782TCONS_00016662-exon-sc0000246-1575043694:335667..335782Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1491911889:336170..336284TCONS_00016662-exon-sc0000246-1491911889:336170..336284Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1510915933:336170..336284TCONS_00016662-exon-sc0000246-1510915933:336170..336284Clytia hemisphaericaexon
TCONS_00016662-exon-sc0000246-1575043694:336170..336284TCONS_00016662-exon-sc0000246-1575043694:336170..336284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000246supercontigsc0000246:329408..336284 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.551481	0.781515	1.4584	2.3537	2.11387	2.36913	4.70883	3.39702	2.48293	4.78995	0	0	0	0	0	0	0	0	0	0	0.228835	1.64876	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016662 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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