TCONS_00016668 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016668
Unique NameTCONS_00016668
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016668 ID=TCONS_00016668|Name=TCONS_00016668|organism=Clytia hemisphaerica|type=transcript|length=1717bp
ATTTGAAGCGTTAATTTGCCTTATAAGGAAACACCTCTAAAAATAtaata
ctttcaatttttctcattCAATCAGGTTGTATGAATACACCAAAACTTGG
CTTGAGAGTGTGTCAAGACCACGAAGACACAACAGCAAGATTTAGTGATC
ATTAccagaaacaaaaacaaaacaatgctGCTATTGCCGATGATAAAGAT
GAAGTAGATGAAGAATCTTTAAACGAAGACAACGAGACCGCAACAACTGA
TGAAGACGGACTGAACGATAATGACTCTGATCCTGCTCAGATTACAacga
aaaaggagaaaaatggTATTTATCAAGGAGTGATCAGAATTTGCAACACG
AAGGAAACCAGAACATCAACACTTTACGAAGTTTTATGGCATACTGGCCA
AAAAACCTGGGTACGGGATGAGAAATTACCTCAACACCTAAGAAATGCCA
ATAACAAAATTGTTGTACAAGATGTGACGTCACTTGGTCAACCAAGGCAA
ATTTTGGGATTCACAAGAAATGACAACGGAGATAGTGTTGACCTACCCGT
cccagaaaaaaagGAAGAAACTCCAGATCCTTCAAGTTTAAAATGCGGAA
CGGATAAATCGAAACATATTGCCAAGAATAAGAAAACAGCAGGTGTTTTG
GTAATGGCGAAACCATGTGGTATCGTTGTCAACATAAAGGAGCTGTTCAA
TTGTGAATCCATATCTCAAGTTTATGGCCATTTGCACGACCTCTTAAGCC
AAGACGAATATCAATCAATCAATTGTATCGTATACGACGATGCTTGTCAT
CTTTTGAAGTATTCAAAAAATCCTGTCCGGAAGGATGACACTAACACCAG
CAAGCGTATTGCTACATTGGAAATGAAAATTGATCGATTCCACTATCGTA
ATCATGTGGATCCATGGTGTCGCAGAGTTTGTAATCCTAAAACCTCAGAT
CACTTAGCCGGAGTCAACACAGAAACATGCGAGCAGCTCTTTTCTTGGTT
TTCAAAATATGCACCGATGACCAAACATATGAATAGACAAAGATTCATAT
TTTTGACGCTATACTTATTGCATTTTCACAACAAAAAGAAACTTTCGATG
AAGTATTAGAACTATCCTTATTATTAAAAGGAGGATGTATCAATGTATCA
ATGAGCGAACGATTTTGGTACTTTCGTGGTGCCTAGCatcatttttttgc
attttgtaTGGAATTAACATGAAAATTGATGTATTATGAAACTTGCAAAT
CaaccttaaaaaaaactttctttgtttGTTTAACATTTACTTTGACGATA
CCTTCGAAAGGTTGAttgttttttagatttttctataGGTCTTattaaaa
tacacgttttttttataaggaaccttaatatagctccgagcctggagttc
cttattttgccagagagtttcagcctcaaagttccttatcgagttcctta
gtTACTTAGCTGTTAAGTTTGGATTCGCTAAGTGTGTAGCTTCTTTATCa
gcattttttgtctttttgacaTATTGAAAGCCGTTTCAGGAATATTTTCC
GTCTTTTTATTTAGGTTGTTGTAAATGTGTGCAAGTTCAAATTGAACTCT
TGCTGTTcctcaacttgattttttattctcagcctaagcagttccttaac
aattccttatttctcagaccattttcagcctaaagttccttataaaaaaa
cgtgtaatagacTCTCG
Run BLAST on NCBI

transcript from alignment at sc0000246:392675..397543+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016668 ID=TCONS_00016668|Name=TCONS_00016668|organism=Clytia hemisphaerica|type=transcript|length=4869bp|location=Sequence derived from alignment at sc0000246:392675..397543+ (Clytia hemisphaerica)
ATTTGAAGCGTTAATTTGCCTTATAAGGAAACACCTCTAAAAATAtaata
ctttcaatttttctcattCAATCAGGTTGTATGAATACACCAAAACTTGG
CTTGAGAGTGTGTCAAGACCACGAAGACACAACAGCAAGATTTAGTGATC
ATTAccagaaacaaaaacaaaacaatgctGCTATTGCCGATGATAAAGAT
GAAGTAGATGAAGAATCTTTAAACGAAGACAACGAGACCGCAACAACTGA
TGAAGACGGACTGAACGATAATGACTCTGATCCTGCTCAGATTACAacga
aaaaggagaaaaatggTATTTATCAAGGAGTGATCAGAATTTGCAACACG
AAGGAAACCAGAACATCAACACTTTACGAAGTAACAATCTATCATTTCGT
GAATTCCTACTTTCTTGATTATGAACAGCTCACATTATACAGTCAGCAAA
TTATAAGAATGATAAATAAAAAGGCACAATTTAACTTGTCAAGTAACTTG
TCAAATGAGTTTTATCATCAACGGTGCTTTTATTCGTTTTTAGGTTTTAT
GGCATACTGGCCAAAAAACCTGGGTACGGGATGAGAAATTACCTCAACAC
CTAAGAAATGCCAATAACAAAATTGTTGTACAAGATGTGACGTCACTTGG
TCAACCAAGGCAAATTTTGGGATTCACAAGAAATGACAACGGAGATAGTG
TTGACCTACCCGTcccagaaaaaaagtaaatttttgctttttcctTGCAG
CCTGTGACTGTAGCTCTTTACATTAATTCCaggtttataaaaaaaatatg
tgtgtgaTAATTGGCACAGAGGTCCCTCCTCCATCAGAATAAAGTGGAGA
CGATTGGAAAAGTTTTGAGCCATTTATTAATGACGTCACTTTTCAGTACA
AACTCTCTAAACATTATCctcaaaaagttcttaaaatgaaaacttttact
gcttcattttgaatattataGAGAACAGATGAATACAATGGGGCTTTTGA
ATATAGGGTTTTGATGTCTATATTTCGAGATGTTCGAAAACGGACTGTTT
TTGTTAAATCAGCACATTTTGCAGCATATTAAAAGTAACAGTCAAATTTC
TGTTTCTGGGGTTTCTAGTGGACAAGAAAATCACATCAACGTTACAAACC
TTCACacgaaaagattttttgaaatttaaaaaggttgGTTGCCCACTGTG
ggggtttggtacaggctaatcTTAAGTTTATCATGGAATGATTATGAAGT
CTGTGAATCAagtacaaaatttattttaggGAAGAAACTCCAGATCCTTC
AAGTTTAAAATGCGGAACGGATAAATCGAAACATATTGCCAAGAATAAGA
AAACAGCAGGtacaaagtgtttttttttatatattatctCCTATAATAGT
AGATCCTGATTGTTCAAGGCAATCGATATTAGGCTTACATAGAGGATCTG
GGAGTGACCTGAGACAAAAGTTGCATTCAGTTTTCTCACAATTAGTTTAA
AAGATCAATCAGCTTGAGGTAAACTCGTTTTCCAGCCAAATGACCTTcga
atcgaaaaaaattgcttttttaattttttttgcgctaatttttaaaacat
ttgtaGAGAAATGTATCATCCTTATATCCCTATAATAGCAAAGAGTTCTT
CGTACGTAAAGATTGATTTTTCAGGTGTTTTGGTAATGGCGAAACCATGT
GGTATCGTTGTCAACATAAAGGAGCTGTTCAATTGTGAATCCATATCTCA
AGTTTATGGCCATTTGCACGACCTCTTAAGCCAAGACGAATATCAATCAA
TCAGTAAGTAATTTGACGATCAGTTTAGTATCTGATTCTTAACAAGAACT
TAAATTATAAAAATGGCAGTCCGTTTAATACATTTAATACTCttgttaaa
aaaaacaaccttagAGAGATTTGATGAACGTTTTTTAGACTTAACAATAA
TTTTAAatctgaaattaaaaataattaataaagATGTTTTAAAAGCATAC
AACGCTTTCATTTTTTAACCATAGCGTTAGCATTCAGGCTACCCTCAATA
TGGTAACTGAATTGGACAGTAAAAATTTTAACTCATTTCTGTTTTTAGAT
TGTATCGTATACGACGATGCTTGTCATCTTTTGAAGTATTCAAAAAATCC
TGTCCGGAAGGATGACACTAACACCAGCAAGCGTATTGCTACATTGGAAA
TGAAAATTGATCGATTCCACTATCGTAATCATGTGGATCCATGGTGTCGC
AGAGTTTGTAATCCTAAAACCTCAGATCACTTAGCCGGAGTAAGTAATTA
TCTCTATTCCATTTCTATAATAGATTTTACAACGGAGCCATTCTCTGAgg
caaaatattttgttacCTATTCAAAGCTACCATATTTTCATGGTAAGGCC
CAGGATTATTCGGTTTGTTTAGATTATTTTCGACTATCTTCGTAACGTAT
ATAATACagataaaacataaaaatcatcGAGGGATAAAACtttcccttta
atttttttaggTCAACACAGAAACATGCGAGCAGCTCTTTTCTTGGTNCT
CAACCAACGATCATTGgtgaaataacaaaaaaaaagaaattgatccgaaa
aaacaagaagcctactttttttgattaaTTGCTCCTGAAGGAAAAAAGTT
ACAATTAAAAGTAATAGCTCGCTGAAAAGATAATTCTGAGTGAGAGTATT
CAAAGCTttagaactttttcaaaacattgaaaaatgaAGTAGAAGAGAAT
ATACATCAATATTTTAacaattctgaaaatttgaactttGCTAATTTCGA
AtatgttttcagatttttcacatCTTTCGTTTTTTCCCGCNTGAAGTAGA
AGAGAATATACATCAATATTTTAacaattctgaaaatttgaactttGCTA
ATTTCGAAtatgttttcagatttttcacatctttcgttttttcccgcaaa
atttgctgctggctgcacgagtaAAACTGTTGGACGATATCTgtcgttgg
cacggatttcgtggggtacatatacctatataccccataNTACATAGAGG
ATCTGGGAGTGACCTGAGACAAAAGTTGCATTCAGTTTTCTCACAATTAG
TTTAAAAGATCAATCAGCTTGAGGTAAACTCATTTTCCAGCCAAATGACC
TTcgaatcgaaaaaaattgcttttttattttttttgcgctaatttttaaa
acatttgtaGAGAAATGTATCATCCTTATATCCCTATAATAGCAAAGAGT
TCTTCGTACGTAAAGATTGATTTTTCAGGTGTTTTGGTAATGGCGAAACC
ATGTGGTATCGTTGTCAACATAAAGGAGCTGTTCAATTGTGAATCCATAT
CTCAAGTTTATGGCCATTTGCACGACCTCTTAAGCCAAGACGAATATCAA
TCAATCAGTAAGTAATTTGACGATCAGTTTAGTATCTGATTCTTAACAAG
AACTTAAATTATAAAAATGGCAGTCCGTTTAATACATTTAATACTCttgt
taaaaaaaacaaccttagAGAGATTTGATGAACGTTTTTTAGACTTAACA
ATAATTTTAAatctgaaattaaaaataattaataaagATGTTTTAAAAGC
ATACAACGCTTTCATTTTTTAACCATAGCGTTAGCATTCAGGCTACCCTC
AATATGGTAACTGAATTGGACAGTAAAAATTTTAACTCATTTCTGTTTTT
AGATTGTATCGTATACGACGATGCTTGTCATCTTTTGAAGTATTCAAAAA
ATCCTGTCCGGAAGGATGACACTAACACCAGCAAGCGTATTGCTACATTG
GAAATGAAAATTGATCGATTCCACTATCGTAATCATGTGGATCCATGGTG
TCGCAGAGTTTGTAATCCTAAAACCTCAGATCACTTAGCCGGAGTAAGTA
ATTATCTCTATTCCATTTCTATAATAGATTTTACAACGGAGCCATTCTCT
GAggcaaaatattttgttacCTATTCAAAGCTACCATATTTTCATGGTAA
GGCCCAGGATTATTCGGTTTGTTTAGATTATTTTCGACTATCTTCGTAAC
GTATATAATACagataaaacataaaaatcatcGAGGGATAAAACTTTCCC
TTTAAATTTTTTAGGTCAACACAGAAACATGCGAGCAGCTCTTTTCTTGG
TTTTCAAAATATGCACCGATGACCAAACATATGAATAGACAAAGATTCAT
ATTTTTGACGCTATACTTATTGCATTTTCACAACAAAAAGAAACTTTCGA
TGAAGTATTAGAACTATCCTTATTATTAAAAGGAGGATGTATCAATGTAT
CAATGAGCGAACGATTTTGGTACTTTCGTGGTGCCTAGCatcattttttt
gcattttgtaTGGAATTAACATGAAAATTGATGTATTATGAAACTTGCAA
ATCaaccttaaaaaaaactttctttgtttGTTTAACATTTACTTTGACGA
TACCTTCGAAAGGTTGAttgttttttagatttttctataGGTCTTattaa
aatacacgttttttttataaggaaccttaatatagctccgagcctggagt
tccttattttgccagagagtttcagcctcaaagttccttatcgagttcct
tagtTACTTAGCTGTTAAGTTTGGATTCGCTAAGTGTGTAGCTTCTTTAT
CagcattttttgtctttttgacaTATTGAAAGCCGTTTCAGGAATATTTT
CCGTCTTTTTATTTAGGTTGTTGTAAATGTGTGCAAGTTCAAATTGAACT
CTTGCTGTTcctcaacttgattttttattctcagcctaagcagttcctta
acaattccttatttctcagaccattttcagcctaaagttccttataaaaa
aacgtgtaatagacTCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009317XLOC_009317Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016668-exon-sc0000246-1491911889:392675..393054TCONS_00016668-exon-sc0000246-1491911889:392675..393054Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1510915933:392675..393054TCONS_00016668-exon-sc0000246-1510915933:392675..393054Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1575043694:392675..393054TCONS_00016668-exon-sc0000246-1575043694:392675..393054Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1491911889:393218..393399TCONS_00016668-exon-sc0000246-1491911889:393218..393399Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1510915933:393218..393399TCONS_00016668-exon-sc0000246-1510915933:393218..393399Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1575043694:393218..393399TCONS_00016668-exon-sc0000246-1575043694:393218..393399Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1491911889:393954..394033TCONS_00016668-exon-sc0000246-1491911889:393954..394033Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1510915933:393954..394033TCONS_00016668-exon-sc0000246-1510915933:393954..394033Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1575043694:393954..394033TCONS_00016668-exon-sc0000246-1575043694:393954..394033Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1491911889:394349..394477TCONS_00016668-exon-sc0000246-1491911889:394349..394477Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1510915933:394349..394477TCONS_00016668-exon-sc0000246-1510915933:394349..394477Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1575043694:394349..394477TCONS_00016668-exon-sc0000246-1575043694:394349..394477Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1491911889:396377..396567TCONS_00016668-exon-sc0000246-1491911889:396377..396567Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1510915933:396377..396567TCONS_00016668-exon-sc0000246-1510915933:396377..396567Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1575043694:396377..396567TCONS_00016668-exon-sc0000246-1575043694:396377..396567Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1491911889:396789..397543TCONS_00016668-exon-sc0000246-1491911889:396789..397543Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1510915933:396789..397543TCONS_00016668-exon-sc0000246-1510915933:396789..397543Clytia hemisphaericaexon
TCONS_00016668-exon-sc0000246-1575043694:396789..397543TCONS_00016668-exon-sc0000246-1575043694:396789..397543Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000246supercontigsc0000246:392675..397543 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0480484	0.0231221	0.0472619	0.0322106	0.0106236	0.0251846	0.0407519	0.0190718	0.0397284	0	0.0158902	0.0104626	0.0314774	0.0327051	0.0489832	0.0573452	0.0710655	0.0422382	0.00836592	0.0261702	0.0543182	0.0223179	0.0269749	0.0327701	0.0336789	0.0225432	0.0645186	0.144037	0.0175765	0.0206802
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016668 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top