XLOC_009317 (gene) - C. hemisphaerica

Overview
NameXLOC_009317
Unique NameXLOC_009317
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000246:392675..397543+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009317 ID=XLOC_009317|Name=XLOC_009317|organism=Clytia hemisphaerica|type=gene|length=4869bp|location=Sequence derived from alignment at sc0000246:392675..397543+ (Clytia hemisphaerica)
ATTTGAAGCGTTAATTTGCCTTATAAGGAAACACCTCTAAAAATAtaata ctttcaatttttctcattCAATCAGGTTGTATGAATACACCAAAACTTGG CTTGAGAGTGTGTCAAGACCACGAAGACACAACAGCAAGATTTAGTGATC ATTAccagaaacaaaaacaaaacaatgctGCTATTGCCGATGATAAAGAT GAAGTAGATGAAGAATCTTTAAACGAAGACAACGAGACCGCAACAACTGA TGAAGACGGACTGAACGATAATGACTCTGATCCTGCTCAGATTACAacga aaaaggagaaaaatggTATTTATCAAGGAGTGATCAGAATTTGCAACACG AAGGAAACCAGAACATCAACACTTTACGAAGTAACAATCTATCATTTCGT GAATTCCTACTTTCTTGATTATGAACAGCTCACATTATACAGTCAGCAAA TTATAAGAATGATAAATAAAAAGGCACAATTTAACTTGTCAAGTAACTTG TCAAATGAGTTTTATCATCAACGGTGCTTTTATTCGTTTTTAGGTTTTAT GGCATACTGGCCAAAAAACCTGGGTACGGGATGAGAAATTACCTCAACAC CTAAGAAATGCCAATAACAAAATTGTTGTACAAGATGTGACGTCACTTGG TCAACCAAGGCAAATTTTGGGATTCACAAGAAATGACAACGGAGATAGTG TTGACCTACCCGTcccagaaaaaaagtaaatttttgctttttcctTGCAG CCTGTGACTGTAGCTCTTTACATTAATTCCaggtttataaaaaaaatatg tgtgtgaTAATTGGCACAGAGGTCCCTCCTCCATCAGAATAAAGTGGAGA CGATTGGAAAAGTTTTGAGCCATTTATTAATGACGTCACTTTTCAGTACA AACTCTCTAAACATTATCctcaaaaagttcttaaaatgaaaacttttact gcttcattttgaatattataGAGAACAGATGAATACAATGGGGCTTTTGA ATATAGGGTTTTGATGTCTATATTTCGAGATGTTCGAAAACGGACTGTTT TTGTTAAATCAGCACATTTTGCAGCATATTAAAAGTAACAGTCAAATTTC TGTTTCTGGGGTTTCTAGTGGACAAGAAAATCACATCAACGTTACAAACC TTCACacgaaaagattttttgaaatttaaaaaggttgGTTGCCCACTGTG ggggtttggtacaggctaatcTTAAGTTTATCATGGAATGATTATGAAGT CTGTGAATCAagtacaaaatttattttaggGAAGAAACTCCAGATCCTTC AAGTTTAAAATGCGGAACGGATAAATCGAAACATATTGCCAAGAATAAGA AAACAGCAGGtacaaagtgtttttttttatatattatctCCTATAATAGT AGATCCTGATTGTTCAAGGCAATCGATATTAGGCTTACATAGAGGATCTG GGAGTGACCTGAGACAAAAGTTGCATTCAGTTTTCTCACAATTAGTTTAA AAGATCAATCAGCTTGAGGTAAACTCGTTTTCCAGCCAAATGACCTTcga atcgaaaaaaattgcttttttaattttttttgcgctaatttttaaaacat ttgtaGAGAAATGTATCATCCTTATATCCCTATAATAGCAAAGAGTTCTT CGTACGTAAAGATTGATTTTTCAGGTGTTTTGGTAATGGCGAAACCATGT GGTATCGTTGTCAACATAAAGGAGCTGTTCAATTGTGAATCCATATCTCA AGTTTATGGCCATTTGCACGACCTCTTAAGCCAAGACGAATATCAATCAA TCAGTAAGTAATTTGACGATCAGTTTAGTATCTGATTCTTAACAAGAACT TAAATTATAAAAATGGCAGTCCGTTTAATACATTTAATACTCttgttaaa aaaaacaaccttagAGAGATTTGATGAACGTTTTTTAGACTTAACAATAA TTTTAAatctgaaattaaaaataattaataaagATGTTTTAAAAGCATAC AACGCTTTCATTTTTTAACCATAGCGTTAGCATTCAGGCTACCCTCAATA TGGTAACTGAATTGGACAGTAAAAATTTTAACTCATTTCTGTTTTTAGAT TGTATCGTATACGACGATGCTTGTCATCTTTTGAAGTATTCAAAAAATCC TGTCCGGAAGGATGACACTAACACCAGCAAGCGTATTGCTACATTGGAAA TGAAAATTGATCGATTCCACTATCGTAATCATGTGGATCCATGGTGTCGC AGAGTTTGTAATCCTAAAACCTCAGATCACTTAGCCGGAGTAAGTAATTA TCTCTATTCCATTTCTATAATAGATTTTACAACGGAGCCATTCTCTGAgg caaaatattttgttacCTATTCAAAGCTACCATATTTTCATGGTAAGGCC CAGGATTATTCGGTTTGTTTAGATTATTTTCGACTATCTTCGTAACGTAT ATAATACagataaaacataaaaatcatcGAGGGATAAAACtttcccttta atttttttaggTCAACACAGAAACATGCGAGCAGCTCTTTTCTTGGTNCT CAACCAACGATCATTGgtgaaataacaaaaaaaaagaaattgatccgaaa aaacaagaagcctactttttttgattaaTTGCTCCTGAAGGAAAAAAGTT ACAATTAAAAGTAATAGCTCGCTGAAAAGATAATTCTGAGTGAGAGTATT CAAAGCTttagaactttttcaaaacattgaaaaatgaAGTAGAAGAGAAT ATACATCAATATTTTAacaattctgaaaatttgaactttGCTAATTTCGA AtatgttttcagatttttcacatCTTTCGTTTTTTCCCGCNTGAAGTAGA AGAGAATATACATCAATATTTTAacaattctgaaaatttgaactttGCTA ATTTCGAAtatgttttcagatttttcacatctttcgttttttcccgcaaa atttgctgctggctgcacgagtaAAACTGTTGGACGATATCTgtcgttgg cacggatttcgtggggtacatatacctatataccccataNTACATAGAGG ATCTGGGAGTGACCTGAGACAAAAGTTGCATTCAGTTTTCTCACAATTAG TTTAAAAGATCAATCAGCTTGAGGTAAACTCATTTTCCAGCCAAATGACC TTcgaatcgaaaaaaattgcttttttattttttttgcgctaatttttaaa acatttgtaGAGAAATGTATCATCCTTATATCCCTATAATAGCAAAGAGT TCTTCGTACGTAAAGATTGATTTTTCAGGTGTTTTGGTAATGGCGAAACC ATGTGGTATCGTTGTCAACATAAAGGAGCTGTTCAATTGTGAATCCATAT CTCAAGTTTATGGCCATTTGCACGACCTCTTAAGCCAAGACGAATATCAA TCAATCAGTAAGTAATTTGACGATCAGTTTAGTATCTGATTCTTAACAAG AACTTAAATTATAAAAATGGCAGTCCGTTTAATACATTTAATACTCttgt taaaaaaaacaaccttagAGAGATTTGATGAACGTTTTTTAGACTTAACA ATAATTTTAAatctgaaattaaaaataattaataaagATGTTTTAAAAGC ATACAACGCTTTCATTTTTTAACCATAGCGTTAGCATTCAGGCTACCCTC AATATGGTAACTGAATTGGACAGTAAAAATTTTAACTCATTTCTGTTTTT AGATTGTATCGTATACGACGATGCTTGTCATCTTTTGAAGTATTCAAAAA ATCCTGTCCGGAAGGATGACACTAACACCAGCAAGCGTATTGCTACATTG GAAATGAAAATTGATCGATTCCACTATCGTAATCATGTGGATCCATGGTG TCGCAGAGTTTGTAATCCTAAAACCTCAGATCACTTAGCCGGAGTAAGTA ATTATCTCTATTCCATTTCTATAATAGATTTTACAACGGAGCCATTCTCT GAggcaaaatattttgttacCTATTCAAAGCTACCATATTTTCATGGTAA GGCCCAGGATTATTCGGTTTGTTTAGATTATTTTCGACTATCTTCGTAAC GTATATAATACagataaaacataaaaatcatcGAGGGATAAAACTTTCCC TTTAAATTTTTTAGGTCAACACAGAAACATGCGAGCAGCTCTTTTCTTGG TTTTCAAAATATGCACCGATGACCAAACATATGAATAGACAAAGATTCAT ATTTTTGACGCTATACTTATTGCATTTTCACAACAAAAAGAAACTTTCGA TGAAGTATTAGAACTATCCTTATTATTAAAAGGAGGATGTATCAATGTAT CAATGAGCGAACGATTTTGGTACTTTCGTGGTGCCTAGCatcattttttt gcattttgtaTGGAATTAACATGAAAATTGATGTATTATGAAACTTGCAA ATCaaccttaaaaaaaactttctttgtttGTTTAACATTTACTTTGACGA TACCTTCGAAAGGTTGAttgttttttagatttttctataGGTCTTattaa aatacacgttttttttataaggaaccttaatatagctccgagcctggagt tccttattttgccagagagtttcagcctcaaagttccttatcgagttcct tagtTACTTAGCTGTTAAGTTTGGATTCGCTAAGTGTGTAGCTTCTTTAT CagcattttttgtctttttgacaTATTGAAAGCCGTTTCAGGAATATTTT CCGTCTTTTTATTTAGGTTGTTGTAAATGTGTGCAAGTTCAAATTGAACT CTTGCTGTTcctcaacttgattttttattctcagcctaagcagttcctta acaattccttatttctcagaccattttcagcctaaagttccttataaaaa aacgtgtaatagacTCTCG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00016666TCONS_00016666Clytia hemisphaericatranscript
TCONS_00016667TCONS_00016667Clytia hemisphaericatranscript
TCONS_00016668TCONS_00016668Clytia hemisphaericatranscript
TCONS_00016669TCONS_00016669Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00016667-proteinTCONS_00016667-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000246supercontigsc0000246:392675..397543 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.14 0.07 0.14 0.1 0.03 0.08 0.12 0.06 0.12 0 0.05 0.03 0.09 0.1 0.15 0.17 0.21 0.13 0.03 0.08 0.16 0.07 0.08 0.1 0.1 0.07 0.19 0.43 0.05 0.06