TCONS_00016716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016716
Unique NameTCONS_00016716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016716 ID=TCONS_00016716|Name=TCONS_00016716|organism=Clytia hemisphaerica|type=transcript|length=576bp
AAACTTTTAGACCTGGTTTTTGCCGGGCAAAAGGAATTGACGCTTAAGAT
TTTCGCCTCATATCTCGGACGATGAATTAAATATAACGCTAATGTAACTG
CCGAGGCACGGCGGCGAAACCTGGCTGGTCTCGTGCTTGGTTTACgtcat
cttttggtcttttgtTTTTTGTTCCGTGTCTCAAGTTTGTGAgctctttt
catttttgtccAACTACTGATTCGGATTTCCAGGATGGCGATTGCGTCGT
TGAGACCACGCGATGTATCATCAGCTGGATTTTCTTTCGATTGTACGTAC
TTCCATTGATCGATTGTGGTGTTCACGAACGAATTGAACACGGTTGCTTA
CGTATAGATGGAATCGTTTGACTTCGTTCAGTAAATAACTCAAAATGACT
TGAGAATCGATTTCCAAATCAAGCTTGCTGTTTAGTGACAATGATACCTT
GACTGATATAACTCCGGCTGTCAATTCGAGACGTGGGATAGTTGGTCGCT
TTCTAGCTGGTGCTACTCTTGATTTTGCAATGACGAGCTTGCAGATGATT
TCGTCTTGGCTACTTTTAAAACGAAG
Run BLAST on NCBI

transcript from alignment at sc0000248:133780..134522+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016716 ID=TCONS_00016716|Name=TCONS_00016716|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at sc0000248:133780..134522+ (Clytia hemisphaerica)
AAACTTTTAGACCTGGTTTTTGCCGGGCAAAAGGAATTGACGCTTAAGAT
TTTCGCCTCATATCTCGGACGATGAATTAAATATAACGCTAATGTAACTG
CCGAGGCACGGCGGCGAAACCTGGCTGGTCTCGTGCTTGGTTTACgtcat
cttttggtcttttgtTTTTTGTTCCGTGTCTCAAGTTTGTGAgctctttt
catttttgtccAACTACTGATTCGGATTTCCAGGATGGCGATTGCGTCGT
AAGTTGTAGTGTAAGTTGCTTGTGTCTGACTTTGACGTGTTTTACTTCTC
GATCGTCTTCACCGATTGACAACTTCTTAGGTTGAGTTGGCAATTTCGAT
TCGTCACGATAAAGGAACACTGGTGGTCCCTTTAGCCAACGTTGATTCTT
GTTAGTGTTCGATAGGTTGAGACCACGCGATGTATCATCAGCTGGATTTT
CTTTCGATTGTACGTACTTCCATTGATCGATTGTGGTGTTCACGAACGAA
TTGAACACGGTTGCTTACGTATAGATGGAATCGTTTGACTTCGTTCAGTA
AATAACTCAAAATGACTTGAGAATCGATTTCCAAATCAAGCTTGCTGTTT
AGTGACAATGATACCTTGACTGATATAACTCCGGCTGTCAATTCGAGACG
TGGGATAGTTGGTCGCTTTCTAGCTGGTGCTACTCTTGATTTTGCAATGA
CGAGCTTGCAGATGATTTCGTCTTGGCTACTTTTAAAACGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009346XLOC_009346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016716-exon-sc0000248-1491911889:133780..134027TCONS_00016716-exon-sc0000248-1491911889:133780..134027Clytia hemisphaericaexon
TCONS_00016716-exon-sc0000248-1510915933:133780..134027TCONS_00016716-exon-sc0000248-1510915933:133780..134027Clytia hemisphaericaexon
TCONS_00016716-exon-sc0000248-1575043694:133780..134027TCONS_00016716-exon-sc0000248-1575043694:133780..134027Clytia hemisphaericaexon
TCONS_00016716-exon-sc0000248-1491911889:134195..134522TCONS_00016716-exon-sc0000248-1491911889:134195..134522Clytia hemisphaericaexon
TCONS_00016716-exon-sc0000248-1510915933:134195..134522TCONS_00016716-exon-sc0000248-1510915933:134195..134522Clytia hemisphaericaexon
TCONS_00016716-exon-sc0000248-1575043694:134195..134522TCONS_00016716-exon-sc0000248-1575043694:134195..134522Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:133780..134522 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.229568	0.188536	0.218909	0.107084	0	0	0.124284	0	0	0.201807	0	0.128763	0.707211	0.734446	3.72027	2.22659	0	0	0.308286	0.430132	0	0	0.110839	0	0	0.09263	0	0	0.321887	0.546587
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top