TCONS_00016737 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016737
Unique NameTCONS_00016737
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016737 ID=TCONS_00016737|Name=TCONS_00016737|organism=Clytia hemisphaerica|type=transcript|length=1708bp
GTCTCAAAGCCGTTGAAAAGAGAACTCTGCTTGCAGATGTAACCAGAGCT
TCATCACGTCTTGGAAAAAGTTTTAGCTGGACGAAAGCCAACAAACCCAG
GTGGTGGCCCTGCAACGTCCCGTTCCAGTCACCCCatggaaaaatcaaaa
caccAGTGGACCAGATCGACATGGTGATGCGTTCGTTCCACGAACATCAA
ATGCTTAAGATTGTTAAAAAGCATTCGACAATGGTAGCCGACTTTCACGG
ACAGATTAGTGCATTGAAATCATACGCTTCCTCCTTTTCCGATGCCACAA
AGTTAGCTGCGTGTTGCTGTTGGTTCCAAATGCACCGGAAACTGACTAAT
TTGTCTGTTTGTGATATCGATTTAAAaagTCGGTCCCTTACGTTATCGAC
TGATAAAGAACCGGTAGCATTCGAAAGTGTTAATTCTGCGTTGAGCTTCC
ACTTCCTCGGCACGAAAGATCACGAGGATTTCTTTGGGAACCTCTCTTTG
GCACTTGCTGTCAATGAAATGCAGCAGTTACTTGATTGTATTACTAGCGG
AAAGTTTGGCTTAGGTCCGAAGAGATTCCAAGATTGGCTCGATGCCTATG
ACAAAGACACccttgaaaaatctcttttggcttCTGTATCGAAACCTAAA
GtAATGGTGAATTTGTTGGGTATTGCTTtgagcctcaacaaaaatttaaa
gattgTAGATGAAGAAGGCGTGAGTGTTGTTTGCGTCGATGATACCTCGT
TATGTACGATGCCATTCATACTCACTTCTGGCGGATGTTTATATTTGGCT
GCCTTTGAGGACTATGATCCAGAGAGTTGTCGCAGCCACAACATGTACTG
TTATGGTAGAGAGGATGAGGAACAGGTAGTCTGCCGCAATTGTCACCTTG
CCTATCACTTACCCTGTATTCGATGGCAAGATACATGTGGCTGCGATAAA
ATCGAGAACATAAAATTACGcttAATTGATATGTTCCACGAACGCTCGAT
CAACACCTTTTTGCGTCTGATCTACAAAAGTACCGACAAAATTATAaaat
tttcttcgaatttgtTGGATCAGAGCCAGAGATCGGCAAGATCGGAGCTG
GTTGTTCGCCTTCTTTCGGAGGGTAAATGTGACGCACTGATGTTGATGAA
CACCTTCAGTAAACAAATCCCTCAGCAGATAGTCCGCACTCTAACCTCGG
TATTGATGGCATCGCCGGTGTTGGAGGGAAATCGTTCATTTCAAGAACGA
AATCATCAAAGGGTCATTACTGAATTCCTTGTGCCAGAAGTATTGACGTA
TTTGATCCAAATTGAAATTGGCTCTGAAGCTTCGGAGCTGCTCATCGAAC
GTGGTTGTTATTCAGCTTCAAAGATTGTTGGGGGGGAACTAAAAGGGAGT
TTTTAAGTGAAGGAAAGTATGGTCAGGAAACATTTGTCAAAAGTAGtaaa
caaaactgaaaaaaacggTTTACCTCCGAATACGATTGATTTTCTCGCTA
AGGTCAACGCCCAATGACCAAATTGAACGTATAGAGAAAAATTGTTTGGA
AATTTAGTCACTCCCTGTATAAATTCAGTGACTTTGTCACTTATTccata
gactggagtcgtttataatgcgtgaaATACTAATAATACGGGATATATTT
CGTATAAACGACTTGAAGAATCcagtgttccagccttatagataccccgg
ctagctac
Run BLAST on NCBI

transcript from alignment at sc0000248:33884..38306-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016737 ID=TCONS_00016737|Name=TCONS_00016737|organism=Clytia hemisphaerica|type=transcript|length=4423bp|location=Sequence derived from alignment at sc0000248:33884..38306- (Clytia hemisphaerica)
GTCTCAAAGCCGTTGAAAAGAGAACTCTGCTTGCAGATGTAACCAGAGCT
TCATCACGTGGGTATTCGTTTCTGCGTTTTTTAGGAATATCATTAGACTG
TTTTTACTTTGCACAACTGCTTGAGCTGTACATATCAAACAGGTTATGCC
CCTGTATTTAGATTCTTAAGTTAAGAGACATAGTATGAAAATATTACTTT
CTCAGGTCTTGGAAAAAGTTTTAGCTGGACGAAAGCCAACAAACCCAGGT
GGTGGCCCTGCAACGTCCCGTTCCAGTCACCCCATGGAAAAATCAAAACA
CCAGTGGACCAGATCGACATGGTGATGCGTTCGTTCCACGAACATCAAAT
GCTTAAGATTGTTGTAAGTAATTCATGGTGAAATAAAACGTTAATAATAT
ATATTGTGCTGAACCTGAGACACTGAAACATTCCTGGAAATAAGCAATCT
GCACAGACTTTAGACATCCTTCTTGAATTGTTTAGTCTATATCAAGCCCG
TGTTTTATAGGTTATCAGCCTTATACTTTTTCTCTTTTATCTAGAAAAAG
CATTCGACAATGGTAGCCGACTTTCACGGACAGATTAGTGCATTGAAATC
ATACGCTTCCTCCTTTTCCGATGCCACAAAGTTAGCTGCGTGTTGCTGTT
GGTTCCAAATGCACCGGAAACTGACTAATTTGTCTGTTTGTGATATCGAT
TTAAAGTAAAGTATTACTTCGAATAAACGCCCCGGTGTTTATTCTTTCTA
TTTTTTAGATTTTATGAGGGACGTTTAAAAAAGGGGGCATCTATTAAATA
ATCTTTAAACAAGCTCACTTTAATAGAGTGAGTGAATACCTTTTTTGCCT
TTTCGTTTCGTTCAGTTCAAATATGTCATTTTAGAAATGTTAGAATGGAT
CAAAATTAGTTTTGGTGCTTGAAAGGATTACAATAATGACATCTCTAATT
ATGGAAAAAGGAACTTGAGGTGAATGATAAAATCAACCATAAATTCGACT
ATGCTTTCTTTATTTTTCAGAAGTCGGTCCCTTACGTTATCGACTGATAA
AGAACCGGTAGCATTCGAAAGTGTTAATTCTGCGTTGAGCTTCCACTTCC
TCGGCACGAAAGATCACGAGGATTTCTTTGGGAACCTCTCTTTGGCACTT
GCTGTCAATGAAATGCAGCAGTTACTTGATTGTGTGAGTATTATGTGTCA
AGGTTATCTGAAGATTTAAATTCAAGTAAAAAACTAAAGACTTTTCCAAA
GGTTTCCTTCTTCCCAAGAAGATTTTTGCATTTTCCAGTAAACCCATTTC
TGTTTCTCTTTCTGTTTCAAAGATTACTAGCGGAAAGTTTGGCTTAGGTC
CGAAGAGATTCCAAGATTGGCTCGATGCCTATGACAAAGACACCCTTGAA
AAATCTCTTTTGGCTTCTGTATCGAAACCTAAAGGTATACAAAGATACTC
TTTTGCTATTATGGCTTTTCGGTATATTCCAAAGGCTGATTTTCCAGTCA
AAATATTAGCTTTAAAGCTATACAGATTTGTACACATTTTCGACTTTAAA
GAACAGATACATTAACATTACATTAACATTGCTTCCTTAAAGGTTTTTTA
TGTATTCAACACACTTTATATTGTAAAATCTTTGAAACTGAATTTAATTT
AATTTAATTAAGTCGAACTAAGCGGCTATAGATATCCTACTGAAAATAAA
TTTTATTCTTGTATCATATTATATTGTATTATATAGACCCAAAACTACGA
CTGACCATGACATTGGGACATCACGACATAATATAAAACTACGATAAGAC
AGAACGACTGACAAACTCACAAACTCAGGACAGGTCTTCCTCAACGTACT
TTCTGTGCCGATTGATTATTTTTAAACTCGACTATACTCTTCTTAAATTT
GGAAAGTGGACTTGAAGTTTCAAAATTGAATTCAAAATTACGTCTTTTCC
GTCTTTTACTTACTTTTATTTGAAAGCTTTGAGAAATTTATTCAATACTG
AATATTTCAAAGTTAAAAAGTCAAAACATGATGATGTGGTGTTGCTTTCT
AAATCATTTGATTTCTTTTAGTAATGGTGAATTTGTTGGGTATTGCTTTG
AGCCTCAACAAAAATTTAAAGATTGTAGATGAAGAAGGCGTGAGTGTTGT
TTGCGTCGATGATACCTCGTTATGTACGATGCCATTCATACTCACTTCTG
GCGGATGTTTATATTTGGCTGCCTTTGAGGACTATGATCCAGAGAGTTGT
CGCAGCCACAACATGTACTGTTATGGTAGAGAGGATGAGGAACAGGTAGT
CTGCCGCAATTGTCACCTTGCCTATCACTTACCCTGTATTCGATGGCAAG
ATACATGTGGCTGCGATAAAATCGAGAACATAAAATTACGGTACTTTTTT
ACTCATCATTCATATTATTGTTGGTCAAGACGTTAATCTTACCCTTTACG
AGGTGTTTGGCTAAACAGAAGACTGAANTGTTGGTCAAGACGTTAATCTT
GCCCTTTACAAGGTGTCCGGCTAAACAGAAGACTGAATTTGATCAAAAAT
ATCCAAGAAATTTATTTATGGACCCTGAATATCTCGTTTCCGAGATTTTG
AAATTGTAAATAAATTTTTAGGTAAACGGCGCTCTATACAATCTATAAAA
ATCACAAGGTAATTTTCTGTAAGCTATCAAGTTTAATCGGTTTAAATAAC
CCGCGAGTTTAATCTATTCTGGCTAGCGAGTATAGTATATTTAGGAAGAT
TGGAGAAACGTCTCTAACACAACCATTCAATACAGTACATACTAACCTTT
ATGGCATTCTTTTTTTTTTAGCTTAATTGATATGTTCCACGAACGCTCGA
TCAACACCTTTTTGCGTCTGATCTACAAAAGTACCGACAAAATTATAGTA
AGCCTCATTTTTTAACTATAAATTCAATTATTGAGTTATTCTTCAAAGGG
AAGGATCATGGAATTTATTGAAACCAATAGAAAATTTTCATAATCGTTTA
TGTTTTTACCTAGAAATTTTCTTCGAATTTGTTGGATCAGAGCCAGAGAT
CGGCAAGATCGGAGCTGGTTGTTCGCCTTCTTTCGGAGGGTAAATGTGAC
GCACTGATGTTGATGAACACCTTCAGTAAACAAATCCCTCAGCAGATAGT
AAGAAGAATTTTAATTATATTTTTCATCAGACACTGTATCCGTATTTTTT
CAGAGAAGAAGAGCTAAGCAAGCAAGAGCGTTTGCTGTAAAGCTCTGGAG
TGAAGTGCTACCAAATCTATTGCAAAGCTTAATTATATTTCTTATTTCCA
GGTCCGCACTCTAACCTCGGTATTGATGGCATCGCCGGTGTTGGAGGGAA
ATCGTTCATTTCAAGAACGAAATCATCAAAGGGTCATTACTGAATTCCTT
GTGCCAGAAGTGAGTATTTTGAGCCTCGCTTCTGCTCGTTACTCCTTTAA
AAACTGAAATTACGCATTTGATATTCATAAACATCCTTGAAAGAGAATTC
CAAAACGTACTTAAAGAAAAACCATAGTCATTATAAAAAACTCCGGTCTG
GCAATGTATTGTGTTTAGCTTTTTGTGCAATTTTCTATTGTTACAAACAA
AAAGCAAGTTGCGATTTGCATACTTTTTGATCACGTTACCAAAATATCCT
CTTGGGATTGGTCTATTTTCTAATCACATGATCAAAAAGTTTGCAAAATA
AATCAATTTTGGTACGTAAGCTCCATCTTTTAACAATAAGAAGAGACAAA
AGCCTTCCACACCAGTGTTTTTATAATGACTATGGAAAAATGAACAGTTC
AGGGACAAAACTTTACTGTCTTTCAAGGCTCCCTAAATTTTTATCCCATG
AAATAAAAAAAGGAACCATTATACACGTAGCTTTTTTAATGAGAGAATGT
TAAGAAACAATTTGTCCCCACGCCTTTATAATTGATAATTCAGTGTTTTT
TGTTTTGTCTTTTTCGCTTGGAAATTATCTTTGACGCCATGTTTTCACGT
TTAGGTATTGACGTATTTGATCCAAATTGAAATTGGCTCTGAAGCTTCGG
AGCTGCTCATCGAACGTGGTTGTTATTCAGCTTCAAAGATTGTTGGGGGG
GAACTAAAAGGGAGTTTTTAAGTGAAGGAAAGTATGGTCAGGAAACATTT
GTCAAAAGTAGTAAACAAAACTGAAAAAAACGGTTTACCTCCGAATACGA
TTGATTTTCTCGCTAAGGTCAACGCCCAATGACCAAATTGAACGTATAGA
GAAAAATTGTTTGGAAATTTAGTCACTCCCTGTATAAATTCAGTGACTTT
GTCACTTATTCCATAGACTGGAGTCGTTTATAATGCGTGAAATACTAATA
ATACGGGATATATTTCGTATAAACGACTTGAAGAATCCAGTGTTCCAGCC
TTATAGATACCCCGGCTAGCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009359XLOC_009359Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016737-exon-sc0000248-1575043694:38250..38306TCONS_00016737-exon-sc0000248-1575043694:38250..38306Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1575043694:37944..38101TCONS_00016737-exon-sc0000248-1575043694:37944..38101Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1575043694:37602..37762TCONS_00016737-exon-sc0000248-1575043694:37602..37762Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1575043694:37124..37286TCONS_00016737-exon-sc0000248-1575043694:37124..37286Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1575043694:36873..36984TCONS_00016737-exon-sc0000248-1575043694:36873..36984Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1575043694:35917..36235TCONS_00016737-exon-sc0000248-1575043694:35917..36235Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1575043694:35410..35485TCONS_00016737-exon-sc0000248-1575043694:35410..35485Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1575043694:35159..35293TCONS_00016737-exon-sc0000248-1575043694:35159..35293Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1575043694:34898..35005TCONS_00016737-exon-sc0000248-1575043694:34898..35005Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1575043694:33884..34302TCONS_00016737-exon-sc0000248-1575043694:33884..34302Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1510915933:38250..38306TCONS_00016737-exon-sc0000248-1510915933:38250..38306Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1510915933:37944..38101TCONS_00016737-exon-sc0000248-1510915933:37944..38101Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1510915933:37602..37762TCONS_00016737-exon-sc0000248-1510915933:37602..37762Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1510915933:37124..37286TCONS_00016737-exon-sc0000248-1510915933:37124..37286Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1510915933:36873..36984TCONS_00016737-exon-sc0000248-1510915933:36873..36984Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1510915933:35917..36235TCONS_00016737-exon-sc0000248-1510915933:35917..36235Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1510915933:35410..35485TCONS_00016737-exon-sc0000248-1510915933:35410..35485Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1510915933:35159..35293TCONS_00016737-exon-sc0000248-1510915933:35159..35293Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1510915933:34898..35005TCONS_00016737-exon-sc0000248-1510915933:34898..35005Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1510915933:33884..34302TCONS_00016737-exon-sc0000248-1510915933:33884..34302Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1491911889:38250..38306TCONS_00016737-exon-sc0000248-1491911889:38250..38306Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1491911889:37944..38101TCONS_00016737-exon-sc0000248-1491911889:37944..38101Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1491911889:37602..37762TCONS_00016737-exon-sc0000248-1491911889:37602..37762Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1491911889:37124..37286TCONS_00016737-exon-sc0000248-1491911889:37124..37286Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1491911889:36873..36984TCONS_00016737-exon-sc0000248-1491911889:36873..36984Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1491911889:35917..36235TCONS_00016737-exon-sc0000248-1491911889:35917..36235Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1491911889:35410..35485TCONS_00016737-exon-sc0000248-1491911889:35410..35485Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1491911889:35159..35293TCONS_00016737-exon-sc0000248-1491911889:35159..35293Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1491911889:34898..35005TCONS_00016737-exon-sc0000248-1491911889:34898..35005Clytia hemisphaericaexon
TCONS_00016737-exon-sc0000248-1491911889:33884..34302TCONS_00016737-exon-sc0000248-1491911889:33884..34302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:33884..38306 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	5.5653e-06	1.00329e-05	0.237423	1.84538	0.132599	0	0.475062	0.277344	0.619465	0	0.36437	0.218139	0	0.550638	0.0118188	0.367441	0	0.343461	0.303858	4.42638e-06	0	0	0.359064
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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