TCONS_00016744 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016744
Unique NameTCONS_00016744
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016744 ID=TCONS_00016744|Name=TCONS_00016744|organism=Clytia hemisphaerica|type=transcript|length=2358bp
CGAAAAACAAAATTGTAAGCGTTGATAACGAAATTGTGCTACTCATAAAA
TTTCAGGAATTTTTGACTTGGGGAGATAACCATGAAAATATACTTCGAAC
ACCTTTTTTGttatatttctttgaatttgagcatatttctttcaatttct
tttggagATCCTATACCATTTGATACAGAGTGTGGACATACATATTTTGG
TGGACACGATGTCCACTCTGCTACAAGCAAACTCATAGAAGGAAAAGATT
CAATCCCTCATTCGTGGCCGTGGCAAGCCGTGCTCTACTTTAATGGTGAA
CCCGAGTGTGGTGCATCCATCCTTACGCCATATTGGATTTTGACAGCGGC
GCATTGTTTTAACGGACCATGGATGTTGGAAGAAGATATACCGATGTATA
AATATACAATGAGGGCTGGTTTACATAAGTTACATGTCAAAAACGAATAC
CAAGTGGAGATGAAAGTATCAAGAATCTTAAGACATCCCGGATTCTCAAG
ACGCCATTCTAAATATGATATCGCTTTGGTGCGATTAACGACACCATTAA
TGTTCAATGAAGCCATTCAACCAATTTGTCTTCCAAATACTAAAGCTGAA
TCTGGCAGAAAGTGTGTCTCCACAGGTTGGGGAACAACGACGCGAGGTGT
GCTTGATTTCAGTGAAACTTTACAACAAGGCGAAATGGTGGTCATCGACA
CTGAAATGTGTAAATTCCACATGGAGATGATCGCACCCCTCTCAGTTGGT
CAATATAGTTTATGTTCAGCCGGTCTGCAAAATACACGAATGAGTGGCTG
TCATGGTGATAGTGGAAGCCCTTTTGTTTGTTATGATGGCAAACATTGGG
AATTACAAGGTGTAATGAGTTGGGGATCAAGATCATGTGGAGCCAATGAG
AATGAGTACACTGTGTATGCCAGTGTTCATTATCTAAAAGAATGGATAAT
TGAAACAATGACATTGGTTGGGTATCATTAATAATGATTTTGAAACAATT
AGTACGTAAGGCTGTATACTGAATTACTTATCTCGAATAAACATTTAATT
GGTCAAGATTGTGTAAGATCGCAAATGAAATAAAAGGCTAAAGGCTGTAT
ATATTTCAGCAATCAAATTACAAAAGAAATCTATTTACAATACGAAAATG
ACCCTTACttaatgatcaatttttcaaattattttttaccggaaaaaaaa
attattcatcgATTTTGTGTGGTTCTTCCTTCAAATTGGTTATAACCGTT
GTGGATATCTACAATCTGGGCTCCGTTTATGTAGTAACGGTATATGTGGC
GTCGCCAATCTAGCCCAAATTCACataaaatataattcaaaaatttagct
ctctcgccaaaataagtcctcgacaattttaaattttatttgttcTATTT
TATAGCTTCATTTCATTGTCTTTAACAATATTATGCATCAAACTGCATTG
TCACAAACAATATGCACACCAGCCTTACCTTTCAGTATTCAAAGACTTCA
AAGTCCTCTAAAAAATTCCTTGTTTTCTTTAGTAACCGGAATATATTTCG
GTTTGAAGGATGATTTTTCATCTTTTCTCAAAGTCTTTCTGTTCTTTCGG
TCATGTTTTCGTTTTCGGAATTTCTTGATATGGTGTTTAGCATGTTGGAG
ATTATGTcgaatcttttgttttctatgTCGTCGATGatgtttcttctttc
ttttttgttgtgttttagGAATGTAACTTGGTTTGAATGTCTCCTTAGGT
TCAATCTTCCTCTgagtttttttatgtttaagttTCTGAACATGTTTATG
TAGTTTCACACGTTTTGCATTGAGATGTTTTTTCGATTTCGTCGAATGTT
TTGCcttcttcgttttctttttaCGATGTTTGTTATGGTGAGCCTTTGTG
TTTGGTATGTATCCAGGCTTGAATGGTCCCTTAAACGTGATTTTAACACC
CTTCTTTTTATTCACTGGGGACGGAGGAGGCGGGTGATAAACACGTGAAG
TTGCACATTTTAATTGCCATCTTCCATTAGAAAAATTGCCTTTACAATGA
GCTCTCTTCTTCTTTTGAATttcagcagcttgtgcaaaatCCCAGTTCGG
TGGTATGCGTCCTGCTGCTAAATCAGGGTTAAGGGGTGGTGCCCTAGTAG
CAGGGGGTCGGGTCGAGACCAATACCTCTTCCTCTTCTTCAGGACCTACA
GGCTCAAGAACAACGGGCTCTTCTTCCTCCTTTTCAAGATGCTCTTCTTC
AATTCTCTCATGCTCTTTCTCTACCTCTTCATGCTCCTTTTCAATTTTCT
CGTCAACTGTTTCTTCCTGTTCTTCTTCGTGACCAATCTTTCCCTCAGTT
GAACTATc
Run BLAST on NCBI

protein sequence of TCONS_00016744-protein

>TCONS_00016744-protein ID=TCONS_00016744-protein|Name=TCONS_00016744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MKIYFEHLFCYISLNLSIFLSISFGDPIPFDTECGHTYFGGHDVHSATSK
LIEGKDSIPHSWPWQAVLYFNGEPECGASILTPYWILTAAHCFNGPWMLE
EDIPMYKYTMRAGLHKLHVKNEYQVEMKVSRILRHPGFSRRHSKYDIALV
RLTTPLMFNEAIQPICLPNTKAESGRKCVSTGWGTTTRGVLDFSETLQQG
EMVVIDTEMCKFHMEMIAPLSVGQYSLCSAGLQNTRMSGCHGDSGSPFVC
YDGKHWELQGVMSWGSRSCGANENEYTVYASVHYLKEWIIETMTLVGYH
Run BLAST on NCBI

transcript from alignment at sc0000248:159313..168468-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016744 ID=TCONS_00016744|Name=TCONS_00016744|organism=Clytia hemisphaerica|type=transcript|length=9156bp|location=Sequence derived from alignment at sc0000248:159313..168468- (Clytia hemisphaerica)
CGAAAAACAAAATTGTAAGCGTTGATAACGAAATTGTGCTACTCATAAAA
TTTCAGGAATTTTTGACTTGGGGAGATAACCATGAAAATATACTTCGAAC
ACCTTTTTTGTTATATTTCTTTGAATTTGAGCATATTTCTTTCAATTTCT
TTTGGAGATCCTATACCATTTGATACAGGTGAAAAGCTTTTATTAATAAC
CATCTCTTAAAGAATAAGACATTTAAGAGCAATTTTGATTCTAGAATCGC
AAAACCCTGAAAATTTACAATGATGTTCGTTGGTCGAATGGTCGGTGGGA
TGTACGGCGTGTTATGACTCAGTCTTTTTCACCACCGTACATCGTTTGTT
TGTCCCGGAAAATACTGCAGATGTTCTTGTCCATTGAGCGGGTATTCGTC
ATCAATCTGGTCATACAGTTATCTGGTGGGAAATCAGGCATTTAAACCAA
CAACTTCGGATAGTATAATTGCTAAAATTTAAGGCAATAGGGAATCAGAA
ACGCAAAAGTACGCAAAAGTAACGCAAAAGTACGCAAAGATACGCAAAAG
TACGCAAAAGTACGAAAAAACAAAAGCAGCCGAGCCTCAGCCAAAATCTA
CTGGTTCTTATCAACAAATGCTCTCTTTTCTTTCATTACAGAGTGTGGAC
ATACATATTTTGGTGGACACGATGTCCACTCTGCTACAAGCAAACTCATA
GAAGGAAAAGATTCAATCCCTCATTCGTGGCCGTGGCAAGCCGTGCTCTA
CTTTAATGGTGAACCCGAGTGTGGTGCATCCATCCTTACGCCATATTGGA
TTTTGACAGCGGCGCATTGTTTTAACGGACCATGGATGTTGGAAGAAGAT
ATACCGATGTATAAATATACAATGAGGTAAAATCCTTGCACAGAAAGCAA
TACGAGAATGTTTCATTAATTTGAAGACCTGCCCTTTTTCCGTGTGTCAT
ACGGGTGGCAAAAACACGAAAAGTTAAAACCATAACCTTATCGGCCCTTT
TAACGCCTAAGTTTTGCGATATTCTAACTCTTCCATGGACAGTCACTTTT
TGAACTTACAAGAAACTTTGTAAAACTACACTTCAAAGTTGAATAGTTTG
ACTTTAAAATTGGCTATTCGGCTAAACTTTTGATATTGTTGGAAAACTGT
GTGTTATAGATCTCGTGCCGGTTAAGAGATGGTTTGGAAATGGTTTTTTC
CTGTCACTTTTATCTACATCATCCACCGCACAGGTCTTATCTATCTATTT
GTATCGATCATTTCACATTCAGGGCTGGTTTACATAAGTTACATGTCAAA
AACGAATACCAAGTGGAGATGAAAGTATCAAGAATCTTAAGACATCCCGG
ATTCTCAAGACGCCATTCTAAATATGATATCGCTTTGGTGCGATTAACGA
CACCATTAATGTTCAATGAAGCCATTCAACCAATTTGTCTTCCAAATACT
AAAGCTGAATCTGGCAGAAAGTGTGTCTCCACAGGTATAATTTTGAGGAG
GTTTCAGAGGTACCTGATTCCGTCAATTTCCCCCTATTTCCATTGAACCT
TTAAAATGAGAACCAAAACTCCGTCAAAGAAAATTTCTGTGAAATGGAGG
ACTTTGTTGAAAATTCGGAATATTAGTTATTTTGCTATTTTCAGTTTTTC
CAGACAAAGAAAGCAGAATTTCCGTCTCCGGTAGTGGATCTAAATTCCAC
ACTTCCGTCCCAGAACAGATTCCGCATCTTATCTGCTAAATCCACTTATC
TGTTACCGATCGGATTCGAAACAGTCAATATATTCACTAACAATTAACAT
AATCTCCAAGTGTCATGCCAGGAAGAAGTGGTATGGTGGTCCAGACAGTA
ACCATCTCAGCATGCTCTTATTAATATTTAGGTTGGGGAACAACGACGCG
AGGTGTGCTTGATTTCAGTGAAACTTTACAACAAGGCGAAATGGTGGTCA
TCGACACTGAAATGTGTAAATTCCACATGGAGGTAATGTGCACCCTGTGT
CACAGACCCGGTTGAACCCCCTCCCAATTGGAAAACTTGACCAAAACTTC
GCCTCGGGTGGAAAAAATAACCTGAAATTTCATTTTTTAGCTCTGTACAA
TAGAGTTACTATTGTCGTGTTGCTCAAGGCTGATCATACCTGAGCTAATG
ACAACAAAATTTATATTTAAAAGTTTTTCCCGGATATCGGCCTGACTTAC
CGCTGGAAGGTAAGGAGACGGGTTGGTACCCTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTGGATGTGGGTGGTCACCATTCACAGATTGACT
GAGAACGTACCCAATTGCGATTTCTGAGGCGTCTGTGTTAAGGATGAAGT
TCTTCTTAAAATCTGGGAACTGGAGAAGTGGAGGGTTGGTTAGTCTCTCG
ATGAGTGTTTTCCAGGATTGCTCTTGCTCCGTCGTTGTTGGCTTCTTCGC
GTTGATTAACGGCTTTACGTTGCGTGCTTTTGATTTTTCTGCATTTTTCT
TCTCGAGAAGGGCAAGGTCTGACTGTAGCTTTATCAGCTTCAGGATTAAT
CCCCTTCGCTGGGGATACATTAGTCGATCGAGTTTCACGTTTAGTATTTC
TTGTTCAAGCGCCAGGCATTGTTTCTCATTGAGGCTTTCGACATTTAGGT
TGCGATTAATTGGTGGTTCGCCAGGATACATCAATGGGATGTGATTGTTG
CTGATAAATCTCTCGAAGAGGTAATTTCTTCGGTTATTCTTTTGAAGGAA
TAGTTGTGATGTGAATTATTCATTTCCCAGTATTGTTTAGTTAAGATTTC
GTGTAAGGTCGACATCAGGATAGGGACGGGATGCGGTACCGGAGCAGTTC
GGTGGATCAGTTTGTTTTTAATCACGTGGTTTTAAAGTGTTTCTATAAAC
CGTGGTTGAAGACAGCATTTTGTTGGTTCGATCCGCTAGCTAGCGATTGG
CGGTTGAACAGCTGGGAGATTGTAAGGTAAATCTATAGATCTTCAGTTCT
ATTCTATCGAGCTCGAAGGCTCTCGTGGGTAGGGTTAAAGATTGTAAGAT
TTGGTCGCTTGGGAGGTGATCAGTGATCACAGCGTATTCAATAGACCTTC
GGTCTCACTCGGGTGAGCCTAAGACTCGAGAAGTGAGTTAAGAAGATTGT
ATGGATAGGGCTGTGCTACCTGACCAGGACGCGATGTATTCAATAGATCC
TTGGTCTCACTTGAGCGATTTATAAGGATTGTATGAATATAATCACCTTA
CTTCGGATCGTTGATGTTCGCGATTCGCCGGTGACAATCTGCGATCTTTC
TCTGTCGCTTCTTAACACGCTTCATCAGTTTTTTGATCTGCCTCTCCTCC
TTTTTCTGCAGTCTCTGAAGCTTCGCCAAATTCTTTTCGACCTGACCTCG
CGATGAGATGGGAGGTGGTTGGCTCGATCTGCTGTGCTTTCTTGTCTTGG
CTTGTCGACGATGCTTCTGTATTATTTTTCTTCGGAATCTTGTAGGGTTT
CAACAGGTTTAAAGGGTCTTTACAACTTCTGTTTGTGATGACACTCTTTA
AACGTCTCTGTCCTTCAAGTATCTTGTTCAGAATGTCCGACATACCCAAA
CTACTGTAACAAGTCACTGAAGTGAAAACCTTTCATTAAATTTTTAGCAG
CGACAGATGCCAACAGGTTGATTGAAATATAGAGTCGATCTTGTTAAGAA
ACAATCAGATAAGTTTGAAAACAGGCTCGTAAAGTTTCTTCAAGCAAGAG
TACCATTGAATGCATGAATGGGCATTCAAGCAAAACTTGTTTTTCATTCA
GCAAGCTCGCTTTGGATAGCATTCATGGCTTATCTAACAACAGGCAGCTG
CTAATTCATCGAAATGATTGTCAATTTCGGAAACATATTCTTTTCCCCAA
GAATTCTCGGTTTTCGGGAACTTCCCGTTTCGCTTGTTTCTAACCATAAC
GACTCCAAAAACAGCCACGCCCTTTTCAAAGATCGGTGTAGAAAGTAATC
TCAAACCATTCAGAAAGTGTTCGATCAAAATTCAATAATTCGGCATATCG
ATGTTTCTATCCGCAAGACATTTGTTCGATATCTGTTTGATTCGCAAGAT
CGGAGTTGAGTGACTACCTGGTCCATCAGAGCTTGAGTGTAAGCGTTTTG
CTAAGTCCAAGCTTGGATAGACGTGGAGTTCAGTAACTACCGATCAAGTT
CTGAAAGCATTAGGGGTANCTACCTGGTCTATCAGAGCTTGAGTGTAAGC
GTTTCGCTAAGTCCAAGCTTGGATAGACGTGGAGTTCAGTAACTACCGAT
CAAGTCCTGAAAGCATTAGGGGTGACAAGCCAAAATACACGCAAGTCATC
GAGAAGAGTGAGCAGCTTCTTCAAACAACCAAGTAAATAACAAACATATC
CAACAGTACACATAGCCTTTGTTTTAACAAAACAAATTGAACAATCATCT
CTTCGTTCTCTTGAAAATAGTGTTCTCGAAATTCACAGCAAATCGGTTTC
ATGGTAACTGTTCGGTAATTCGTATTTCAGTCTTCTTCAATTTTTATAAG
TTTTTAATTTTTGCGATTTTTTTGTTGTGTCCCTCCATAACTGCCTATCA
CCATTAGGCTATCCCGGTTGAGCCCCCAGATGTCGTGTTGCTCAAGGCTG
ATCATACCTGAGCTAATGACAACAAAATTTATATTTAAAAGTTTTTCCCG
GATATCGGCCTGACTTACCGCTGGAAGGTAAGGAGACGGGTTGGTACCCT
TTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGGAGTG
GACACGAATTTAGTTCATTATAAGTACTCAATATTAAAACACGATACCAA
CAATAAAATCCAAATAAATATATACAAAAAGTTCATAAGATATCCACGTC
TGGATGCGCCGTTCACTGCAGATTATTACGACTTGGGTTTTATTTCACTC
TGCGGAGATTCCCAACTCCGCAGTCTTTTCCTTCTCTGGGTTTAACTCAG
CAATGCCAAAAAATCTAATACATAATTTCTCTTCCTGGGCCGTACCGCTC
GGTGGCCAATAAATCATTTTGACACCGTCGACCGGCTCCTTCGGAGTCCG
GTGGGCGAGTGTTCTTTTTTGTAAAACGAAAATGTTCTTTTGAAATCAAA
GTCTTTAATAATTTACACACATTCATATTTTTGTAGCTTCTTTCTAGATT
CTAGATTATTCTTTAGTTTCTTCACCATGACACTATCCTCACTAGAATTT
TGAGGAAAATATTATCCCCTCCTGTCGGTAAAGGTGGCACGGGGGTTATG
AGACGGGGGTGTTAATGTAATGTTTGTTCTTTTAGAGCGTTTTATCTCCA
CGTGCCTCATCGTGTCTAATTATAATCGTAGGCAAATGGGAATATTTTGA
AAAATGGACGTACTTTATTTTGATCCAATCAAGTTTAAAATTCCAACGCG
TCCTGGTAAGATAGAAAATATTCGAGAACTTCATTCTTGATATAAACAAT
ACAAAATACCCACACATTGTTTCTATCCTAAGGGGTAATGAAGATTTTAT
AAAAAGACAAATTAATATAGTTCCCGTCCCTAATTCAACTATCGAAAGCG
TAACTCTCAAACTTTGGTTTTCAGATGATCGCACCCCTCTCAGTTGGTCA
ATATAGTTTATGTTCAGCCGGTCTGCAAAATACACGAATGAGTGGCTGTC
ATGGTGATAGTGGAAGCCCTTTTGTTTGTTATGATGGCAAACATTGGGAA
TTACAAGGTGTAATGAGTTGGGGATCAAGATCATGTGGAGCCAATGAGAA
TGAGTACACTGTGTATGCCAGTGTTCATTATCTAAAAGAATGGATAATTG
AAACAATGACATTGGTTGGGTATCATTAATAATGATTTTGAAACAATTAG
TACGTAAGGCTGTATACTGAATTACTTATCTCGAATAAACATTTAATTGG
TCAAGATTGTGTAAGATCGCAAATGAAATAAAAGGCTAAAGGCTGTATAT
ATTTCAGCAATCAAATTACAAAAGAAATCTATTTACAATACGAAAATGAC
CCTTACTTAATGATCAATTTTTCAAATTATTTTTTACCGGAAAAAAAAAT
TATTCATCGATTTTGTGTGGTTCTTCCTTCAAATTGGTTATAACCGTTGT
GGATATCTACAATCTGGGCTCCGTTTATGTAGTAACGGTATATGTGGCGT
CGCCAATCTAGCCCAAATTCACATAAAATATAATTCAAAAATTTAGCTCT
CTCGCCAAAATAAGTCCTCGACAATTTTAAATTTTATTTGTTCTATTTTA
TAGCTTCATTTCATTGTCTTTAACAATATTATGCATCAAACTGCATTGTC
ACAAACAATATGCACACCAGCCTTACCTTTCAGTATTCAAAGACTTCAAA
GTCCTCTAAAAAATTCCTTGTTTTCTTTAGTAACCGGAATATATTTCGGT
TTGAAGGATGATTTTTCATCTTTTCTCAAAGTCTTTCTGTTCTTTCGGTC
ATGTTTTCGTTTTCGGAATTTCTTGATATGGTGTTTAGCATGTTGGAGAT
TATGTCGAATCTTTTGTTTTCTATGTCGTCGATGATGTTTCTTCTTTCTT
TTTTGTTGTGTTTTAGGAATGTAACTTGGTTTGAATGTCTCCTTAGGTTC
AATCTTCCTCTGAGTTTTTTTATGTTTAAGTTTCTGAACATGTTTATGTA
GTTTCACACGTTTTGCATTGAGATGTTTTTTCGATTTCGTCGAATGTTTT
GCCTTCTTCGTTTTCTTTTTACGATGTTTGTTATGGTGAGCCTTTGTGTT
TGGTATGTATCCAGGCTTGAATGGTCCCTTAAACGTGATTTTAACACCCT
TCTTTTTATTCACTGGGGACGGAGGAGGCGGGTGATAAACACGTGAAGTT
GCACATTTTAATTGCCATCTTCCATTAGAAAAATTGCCTTTACAATGAGC
TCTCTTCTTCTTTTGAATTTCAGCAGCTTGTGCAAAATCCCAGTTCGGTG
GTATGCGTCCTGCTGCTAAATCAGGGTTAAGGGGTGGTGCCCTAGTAGCA
GGGGGTCGGGTCGAGACCAATACCTCTTCCTCTTCTTCAGGACCTACAGG
CTCAAGAACAACGGGCTCTTCTTCCTCCTTTTCAAGATGCTCTTCTTCAA
TTCTCTCATGCTCTTTCTCTACCTCTTCATGCTCCTTTTCAATTTTCTCG
TCAACTGTTTCTTCCTGTTCTTCTTCGTGACCAATCTTTCCCTCAGTTGA
ACTATC

Coding sequence (CDS) from alignment at sc0000248:159313..168468-

>TCONS_00016744 ID=TCONS_00016744|Name=TCONS_00016744|organism=Clytia hemisphaerica|type=CDS|length=4500bp|location=Sequence derived from alignment at sc0000248:159313..168468- (Clytia hemisphaerica)
ATGATCGCACCCCTCTCAGTTGGTCAATATAGTTTATGTTCAGCCGGTCT
GCAAAATACACGAATGAGTGGCTGTCATGGTGATAGTGGAAGCCCTTTTG
TTTGTTATGATGGCAAACATTGGGAATTACAAGGTGTAATGAGTTGGGGA
TCAAGATCATGTGGAGCCAATGAGAATGAGTACACTGTGTATGCCAGTGT
TCATTATCTAAAAGAATGGATAATTGAAACAATGACATTGGTTGGGTATC
ATTAAGTTGGGGAACAACGACGCGAGGTGTGCTTGATTTCAGTGAAACTT
TACAACAAGGCGAAATGGTGGTCATCGACACTGAAATGTGTAAATTCCAC
ATGGAGGGCTGGTTTACATAAGTTACATGTCAAAAACGAATACCAAGTGG
AGATGAAAGTATCAAGAATCTTAAGACATCCCGGATTCTCAAGACGCCAT
TCTAAATATGATATCGCTTTGGTGCGATTAACGACACCATTAATGTTCAA
TGAAGCCATTCAACCAATTTGTCTTCCAAATACTAAAGCTGAATCTGGCA
GAAAGTGTGTCTCCACAGAGTGTGGACATACATATTTTGGTGGACACGAT
GTCCACTCTGCTACAAGCAAACTCATAGAAGGAAAAGATTCAATCCCTCA
TTCGTGGCCGTGGCAAGCCGTGCTCTACTTTAATGGTGAACCCGAGTGTG
GTGCATCCATCCTTACGCCATATTGGATTTTGACAGCGGCGCATTGTTTT
AACGGACCATGGATGTTGGAAGAAGATATACCGATGTATAAATATACAAT
GAGATGAAAATATACTTCGAACACCTTTTTTGTTATATTTCTTTGAATTT
GAGCATATTTCTTTCAATTTCTTTTGGAGATCCTATACCATTTGATACAG
ATGATCGCACCCCTCTCAGTTGGTCAATATAGTTTATGTTCAGCCGGTCT
GCAAAATACACGAATGAGTGGCTGTCATGGTGATAGTGGAAGCCCTTTTG
TTTGTTATGATGGCAAACATTGGGAATTACAAGGTGTAATGAGTTGGGGA
TCAAGATCATGTGGAGCCAATGAGAATGAGTACACTGTGTATGCCAGTGT
TCATTATCTAAAAGAATGGATAATTGAAACAATGACATTGGTTGGGTATC
ATTAAGTTGGGGAACAACGACGCGAGGTGTGCTTGATTTCAGTGAAACTT
TACAACAAGGCGAAATGGTGGTCATCGACACTGAAATGTGTAAATTCCAC
ATGGAGGGCTGGTTTACATAAGTTACATGTCAAAAACGAATACCAAGTGG
AGATGAAAGTATCAAGAATCTTAAGACATCCCGGATTCTCAAGACGCCAT
TCTAAATATGATATCGCTTTGGTGCGATTAACGACACCATTAATGTTCAA
TGAAGCCATTCAACCAATTTGTCTTCCAAATACTAAAGCTGAATCTGGCA
GAAAGTGTGTCTCCACAGAGTGTGGACATACATATTTTGGTGGACACGAT
GTCCACTCTGCTACAAGCAAACTCATAGAAGGAAAAGATTCAATCCCTCA
TTCGTGGCCGTGGCAAGCCGTGCTCTACTTTAATGGTGAACCCGAGTGTG
GTGCATCCATCCTTACGCCATATTGGATTTTGACAGCGGCGCATTGTTTT
AACGGACCATGGATGTTGGAAGAAGATATACCGATGTATAAATATACAAT
GAGATGAAAATATACTTCGAACACCTTTTTTGTTATATTTCTTTGAATTT
GAGCATATTTCTTTCAATTTCTTTTGGAGATCCTATACCATTTGATACAG
ATGATCGCACCCCTCTCAGTTGGTCAATATAGTTTATGTTCAGCCGGTCT
GCAAAATACACGAATGAGTGGCTGTCATGGTGATAGTGGAAGCCCTTTTG
TTTGTTATGATGGCAAACATTGGGAATTACAAGGTGTAATGAGTTGGGGA
TCAAGATCATGTGGAGCCAATGAGAATGAGTACACTGTGTATGCCAGTGT
TCATTATCTAAAAGAATGGATAATTGAAACAATGACATTGGTTGGGTATC
ATTAAGTTGGGGAACAACGACGCGAGGTGTGCTTGATTTCAGTGAAACTT
TACAACAAGGCGAAATGGTGGTCATCGACACTGAAATGTGTAAATTCCAC
ATGGAGGGCTGGTTTACATAAGTTACATGTCAAAAACGAATACCAAGTGG
AGATGAAAGTATCAAGAATCTTAAGACATCCCGGATTCTCAAGACGCCAT
TCTAAATATGATATCGCTTTGGTGCGATTAACGACACCATTAATGTTCAA
TGAAGCCATTCAACCAATTTGTCTTCCAAATACTAAAGCTGAATCTGGCA
GAAAGTGTGTCTCCACAGAGTGTGGACATACATATTTTGGTGGACACGAT
GTCCACTCTGCTACAAGCAAACTCATAGAAGGAAAAGATTCAATCCCTCA
TTCGTGGCCGTGGCAAGCCGTGCTCTACTTTAATGGTGAACCCGAGTGTG
GTGCATCCATCCTTACGCCATATTGGATTTTGACAGCGGCGCATTGTTTT
AACGGACCATGGATGTTGGAAGAAGATATACCGATGTATAAATATACAAT
GAGATGAAAATATACTTCGAACACCTTTTTTGTTATATTTCTTTGAATTT
GAGCATATTTCTTTCAATTTCTTTTGGAGATCCTATACCATTTGATACAG
ATGATCGCACCCCTCTCAGTTGGTCAATATAGTTTATGTTCAGCCGGTCT
GCAAAATACACGAATGAGTGGCTGTCATGGTGATAGTGGAAGCCCTTTTG
TTTGTTATGATGGCAAACATTGGGAATTACAAGGTGTAATGAGTTGGGGA
TCAAGATCATGTGGAGCCAATGAGAATGAGTACACTGTGTATGCCAGTGT
TCATTATCTAAAAGAATGGATAATTGAAACAATGACATTGGTTGGGTATC
ATTAAGTTGGGGAACAACGACGCGAGGTGTGCTTGATTTCAGTGAAACTT
TACAACAAGGCGAAATGGTGGTCATCGACACTGAAATGTGTAAATTCCAC
ATGGAGGGCTGGTTTACATAAGTTACATGTCAAAAACGAATACCAAGTGG
AGATGAAAGTATCAAGAATCTTAAGACATCCCGGATTCTCAAGACGCCAT
TCTAAATATGATATCGCTTTGGTGCGATTAACGACACCATTAATGTTCAA
TGAAGCCATTCAACCAATTTGTCTTCCAAATACTAAAGCTGAATCTGGCA
GAAAGTGTGTCTCCACAGAGTGTGGACATACATATTTTGGTGGACACGAT
GTCCACTCTGCTACAAGCAAACTCATAGAAGGAAAAGATTCAATCCCTCA
TTCGTGGCCGTGGCAAGCCGTGCTCTACTTTAATGGTGAACCCGAGTGTG
GTGCATCCATCCTTACGCCATATTGGATTTTGACAGCGGCGCATTGTTTT
AACGGACCATGGATGTTGGAAGAAGATATACCGATGTATAAATATACAAT
GAGATGAAAATATACTTCGAACACCTTTTTTGTTATATTTCTTTGAATTT
GAGCATATTTCTTTCAATTTCTTTTGGAGATCCTATACCATTTGATACAG
ATGATCGCACCCCTCTCAGTTGGTCAATATAGTTTATGTTCAGCCGGTCT
GCAAAATACACGAATGAGTGGCTGTCATGGTGATAGTGGAAGCCCTTTTG
TTTGTTATGATGGCAAACATTGGGAATTACAAGGTGTAATGAGTTGGGGA
TCAAGATCATGTGGAGCCAATGAGAATGAGTACACTGTGTATGCCAGTGT
TCATTATCTAAAAGAATGGATAATTGAAACAATGACATTGGTTGGGTATC
ATTAAGTTGGGGAACAACGACGCGAGGTGTGCTTGATTTCAGTGAAACTT
TACAACAAGGCGAAATGGTGGTCATCGACACTGAAATGTGTAAATTCCAC
ATGGAGGGCTGGTTTACATAAGTTACATGTCAAAAACGAATACCAAGTGG
AGATGAAAGTATCAAGAATCTTAAGACATCCCGGATTCTCAAGACGCCAT
TCTAAATATGATATCGCTTTGGTGCGATTAACGACACCATTAATGTTCAA
TGAAGCCATTCAACCAATTTGTCTTCCAAATACTAAAGCTGAATCTGGCA
GAAAGTGTGTCTCCACAGAGTGTGGACATACATATTTTGGTGGACACGAT
GTCCACTCTGCTACAAGCAAACTCATAGAAGGAAAAGATTCAATCCCTCA
TTCGTGGCCGTGGCAAGCCGTGCTCTACTTTAATGGTGAACCCGAGTGTG
GTGCATCCATCCTTACGCCATATTGGATTTTGACAGCGGCGCATTGTTTT
AACGGACCATGGATGTTGGAAGAAGATATACCGATGTATAAATATACAAT
GAGATGAAAATATACTTCGAACACCTTTTTTGTTATATTTCTTTGAATTT
GAGCATATTTCTTTCAATTTCTTTTGGAGATCCTATACCATTTGATACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009362XLOC_009362Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016744-exon-sc0000248-1575043694:168291..168468TCONS_00016744-exon-sc0000248-1575043694:168291..168468Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1575043694:167593..167827TCONS_00016744-exon-sc0000248-1575043694:167593..167827Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1575043694:166985..167196TCONS_00016744-exon-sc0000248-1575043694:166985..167196Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1575043694:166487..166587TCONS_00016744-exon-sc0000248-1575043694:166487..166587Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1575043694:159313..160944TCONS_00016744-exon-sc0000248-1575043694:159313..160944Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1510915933:168291..168468TCONS_00016744-exon-sc0000248-1510915933:168291..168468Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1510915933:167593..167827TCONS_00016744-exon-sc0000248-1510915933:167593..167827Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1510915933:166985..167196TCONS_00016744-exon-sc0000248-1510915933:166985..167196Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1510915933:166487..166587TCONS_00016744-exon-sc0000248-1510915933:166487..166587Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1510915933:159313..160944TCONS_00016744-exon-sc0000248-1510915933:159313..160944Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1491911889:168291..168468TCONS_00016744-exon-sc0000248-1491911889:168291..168468Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1491911889:167593..167827TCONS_00016744-exon-sc0000248-1491911889:167593..167827Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1491911889:166985..167196TCONS_00016744-exon-sc0000248-1491911889:166985..167196Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1491911889:166487..166587TCONS_00016744-exon-sc0000248-1491911889:166487..166587Clytia hemisphaericaexon
TCONS_00016744-exon-sc0000248-1491911889:159313..160944TCONS_00016744-exon-sc0000248-1491911889:159313..160944Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016744-proteinTCONS_00016744-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:159313..168468 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0160988	0	0	0.354477	0.122246	0.455978	0.49567	0.235755	0.176328	0.0320379	0	6.27442	4.35219	0.0906132	0.165282	3.52549	2.13995	16.5013	15.6482	10.3852	10.3268	3.85225	3.94559	5.40035	6.20097	0	0.0948343	0.0183237	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR033116TRYPSIN_SER
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
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BLAST of TCONS_00016744 vs. Swiss-Prot (Human)
Match: TMPS3 (Transmembrane protease serine 3 OS=Homo sapiens GN=TMPRSS3 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 2.661e-36
Identity = 91/267 (34.08%), Postives = 134/267 (50.19%), Query Frame = 1 
Query:  175 TECGHTYFGGHDVHSATSKLIEGKDSIPHSWPWQAVLYFNGEPECGASILTPYWILTAAHCFNGPWMLEEDIPMYKYTMRAGLHKLHVKNEYQVEMKVSRILRHPGFSRRHSKYDIALVRLTTPLMFNEAIQPICLPNTKAE--SGRKCVSTGWGTTTRGVLDFSETLQQGEMVVIDTEMCK---FHMEMIAPLSVGQYSLCSAGLQNTRMSGCHGDSGSPFVCYDGKHWELQGVMSWGSRSCGANENEYTVYASVHYLKEWIIETM 960
            T CGH           +S+++ G  S+   WPWQA L F G   CG S++TP WI+TAAHC    ++ +       +T++ GL  L + N     + V +I+ H  +  +    DIAL++L  PL FNE IQP+CLPN++     G+ C ++GWG T  G  D S  L    + +I  ++C     +  +I+P      S+  AG     +  C GDSG P VC + + W+L G  S+G     A  N+  VY  V    +WI E M
Sbjct:  205 TACGHR-------RGYSSRIVGGNMSLLSQWPWQASLQFQGYHLCGGSVITPLWIITAAHCVYDLYLPKS------WTIQVGLVSL-LDNPAPSHL-VEKIVYHSKYKPKRLGNDIALMKLAGPLTFNEMIQPVCLPNSEENFPDGKVCWTSGWGATEDGAGDASPVLNHAAVPLISNKICNHRDVYGGIISP------SMLCAGYLTGGVDSCQGDSGGPLVCQERRLWKLVGATSFGIGC--AEVNKPGVYTRVTSFLDWIHEQM 448
The following BLAST results are available for this feature:
BLAST of TCONS_00016744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMPS32.661e-3634.08Transmembrane protease serine 3 OS=Homo sapiens GN... [more]
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