TCONS_00016805 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016805
Unique NameTCONS_00016805
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016805 ID=TCONS_00016805|Name=TCONS_00016805|organism=Clytia hemisphaerica|type=transcript|length=529bp
TACCAATCTTGTTCATTCTAAAACGtagtaaaatgtcaaaaatcttAGCA
AGTAAATTTGGACCAGGATAAAGGCAATCATTCAAGGATACACCATTGAC
AGAATAAGAAGCATCAAACACAGGCCTTATCTTAGTGGTGACCTTGTCTT
CGCGGATAACTGGTCTATGGGGAATGTAATGAACGGCAATCTGCGCCTCA
GGCACACGTTCGATAATTCCGTCTTTCTCataatcaataaaaattttctc
gTAGTCAGTATTGATACCAAGACGATCGAGACGCGAATTAAGGGATTCCA
GACGTTTCACACAGGTCGAAAAGTTGTCAGGCACACTCTCGTGGTCAGGC
TTGAAAGGCAGTTTCGCGACATACCTAGTACCATCATGGTAAATGTCTTT
GGTAAATTGGTTAATCACTGAGTTATCCTCGGCACTCTCTGCCTCCTCTA
TCTGCCAAAACTTATGGAGCTTGGCATCAAGTGGATCAACAGTTTGTACC
TCAACTCTCATTTGATGACTATAAGTTAC
Run BLAST on NCBI

transcript from alignment at sc0000252:8421..12215-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016805 ID=TCONS_00016805|Name=TCONS_00016805|organism=Clytia hemisphaerica|type=transcript|length=3795bp|location=Sequence derived from alignment at sc0000252:8421..12215- (Clytia hemisphaerica)
TACCAATCTTGTTCATTCTAAAACGTAGTAAAATGTCAAAAATCTTAGCA
AGTAAATTTGGACCAGGATAAAGGCAATCATTCAAGGATACACCATTGAC
AGAATAAGAAGCATCAAACACAGGCCTTATCTTAGTGGTGACCTTGTCTT
CGCGGATAACTGGTCTATGGGGAATGTAATGAACGGCAATCTGCGCCTCA
GGCACACGTTCGATAATTCCGTCTTTCTCATAATCAATAAAAATTTTCTC
GTAGTCAGTATTGATACCAAGACGATCGAGACGCGAATTAAGGGATTCCA
GACGTTTCACACAGGTCGAAAAGTTGTCAGGCACACTCTCGTGGTCGGGC
TTGAAAGGCAGTTTCGCGACATACCTAGTACCATCATGGTAAATGTCTTT
GGTAAATTGGTTAATCACTGAGTTATCCTCGGNTTGAAAGGCAGTTTCGC
GACATACCTAGTACCATCATGGTAAATGTCTTTGGTAAATTGGTTAATCA
CTGAGTTATCCTCGGCACTCTCCGCCTCCTCTATCTGCCAAAACTTATGG
AGCTTGGCATCAACAGTTTGTACCTCAACTCTCATTTGATGACTATAAGT
TACTTCAGTCAAACCTTTGAAAACAAGTAATACTTTAATGGACCTACCTA
TTTATAAAACGAATAATTAGAATTTAATGGAAGTAATGTATAATTTTAAA
TTTCGANAAATCGATACCAACCAATACACCTATACTCAAGTCAAACTCCT
CGGAAACATCTGCAAACACCAAATCAGAGAATTCATTCAACTTCTTTGTA
CAATCCAACTTCTGGTTTGCAATCGGGCTACAAATGTCTGGAACACAAAG
AGCTCCAACTAAAACGTATTTAGAAGACTTCCGATGTTTCACTTTGAACT
GAACAACTTCCAAACGTTTGATTTCCGCATTATTCAAATTCCCAAAAGTC
TTAATCACTACATTCTCTTTTCTCACGCACTTTAATTTTAAACGGTCTTT
TAACTCTGTCGTAATGTAGCTTCTTTGGCTTCCAGTGTCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCAACAAAACGCTACGTGAAG
AAACTTGAGCACAATTTTGAGAAACAGGAGTAGGAACAGAGTTGCAACTA
CAACTACAAGGAGCTTTGGATTCAGACTGAGACTCACTATTTGCATCGGT
CAAGATCGAGATCTGATTGTTAGAAATGTTATCAGCTTCAGATCTTTGTC
TACCTTCATCGCAAATAGAAATGTGATGCCTCTTGTTACACCTATTACAT
GAGTACTTATCTCTACAAGCATTGGAACGATGTCCACGAGCCAAACAAAC
NNNNNNNCTTTTCTCTAATTAGAATATCCCGACGTGACTGTGTATTTGTG
ACCTTTCGACATTTAGCAGAGCTGTGACTCTTTTTACAAAAGACACANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTAAGTACATCGAAGCGAGCGCTTACGGCGCGTGCCAAAAATAA
AGAAAAAGTAGAAAATTATTTATAAGAAAAAATAACTGTAAAAAGTGAGG
TTTTTACAGCGCATATTTTAAGGCTTCAATTTTTCTTGCCTGAGAAAGGT
TAGAGATTGACCTCTAGCCCTTCGGGCTTGAAACTCAATGGTTTAAACAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNACCATTGAGTAAAAAAGGACTAGACGTCAAACCAAAAACAAC
TCTCAAAAAACGATAGACAACGACTTCTCTATCAGAGGACGAAGGGTCTT
TCCAGAGAAATCTCAAAAAGTCTCTATGATCAGGATGGATGCAGATATTC
AAGAAAGCTTGCTTAATATCAGCTAAAATACCAATCTTGTTCATTCTAAA
ACGTAGTAAAATGTCAAAAATCTTAGCAAGTAAATTTGGACCAGGATAAA
GGCAATCATTCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNACACGGGCCTTATCTTAGTGGTGACCTTGTCT
TCACGGATAACTGGTCTATGGGGAATGTAATGAACGGTACCCTCTTCTTT
CGCAATCTGCGCCTCAGGCACACGTTCGATAATTCCGTCTTTCTCATAAT
CAATAAAAATTTTCTCGTAGTCAGTATTAATACCAAGACGATCGAGACGC
GAATTAAGCGATTCCAGACGTTTCACACAGGTCGAAAAGTTGTCAGGCAC
ACTCTCGTGGTCAGGCTTGAAAGGCAGTTTCGCGACATACCTAGTACCAT
CATGGTAAATGTCTTTGGTAAATTGGTTAATCACTGAGTTATCCTCGGCA
CTCTCTGCCTCCTCTATCTGCCAAAACTTATGGAGCTTGGCATCAAGTGG
ATCAACAGTTTGTACCTCAACTCTCATTTGATGACTATAAGTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009405XLOC_009405Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016805-exon-sc0000252-1575043694:11886..12215TCONS_00016805-exon-sc0000252-1575043694:11886..12215Clytia hemisphaericaexon
TCONS_00016805-exon-sc0000252-1575043694:8421..8619TCONS_00016805-exon-sc0000252-1575043694:8421..8619Clytia hemisphaericaexon
TCONS_00016805-exon-sc0000252-1510915933:11886..12215TCONS_00016805-exon-sc0000252-1510915933:11886..12215Clytia hemisphaericaexon
TCONS_00016805-exon-sc0000252-1510915933:8421..8619TCONS_00016805-exon-sc0000252-1510915933:8421..8619Clytia hemisphaericaexon
TCONS_00016805-exon-sc0000252-1491911889:11886..12215TCONS_00016805-exon-sc0000252-1491911889:11886..12215Clytia hemisphaericaexon
TCONS_00016805-exon-sc0000252-1491911889:8421..8619TCONS_00016805-exon-sc0000252-1491911889:8421..8619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:8421..12215 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	18.2676	14.3418	1.67284	1.70792	0	1.67712	0.12576	0.890349	0.562439	0.0526171	0.202537	0.417567	0.190658	0	0	1.31158	0	0	0.775666	0.289034	0.565052	0	0.213649	0	0.0720994	0.140012
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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