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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016816 ID=TCONS_00016816|Name=TCONS_00016816|organism=Clytia hemisphaerica|type=transcript|length=892bp
ATTGCCATTAGCATGTTCATCAACATCAGAATCTCCCAATCTTGCGTCAT
CGCTATCAATAAACAGATCTCCATAGCCGAATGTCTCTCGGATATCACTT
CCTTCTTCTTTGGAGTCAAGCGCGTCTTCTACACGCGTAAGATAATCTTT
AAGCACTCGGTAACTTCTTTTCGATAACTGTAGAACGGTAACATTGACGG
CTCGCACTCTATCTTTTCTCTTGGTTCGAGGTTCTTGAAGTTTGAACGAT
ATGATATCTCCTGTTTGCAACTCCAGTAAACTTGATAGGACACAACGAAA
GCTAAAGTGAATATCCGTCGTCCCGATACAATAAATTTGCCGTTCTTCAT
GTGAGATTCCTTCACTGGTAACAAACCCATAAGGATGTCCCTGATAAGAG
ACGAACTTCACTATCTTCCCTTCGTAAAGAGATCGTGACTGTATCCGGCG
TTTCTTCAAATTAGATGTCCTCGTCATAGGTTCTTCCTCTCCTTTCCGTT
TTGTTCCGTGATCTTTTTCATTGTAAAAGTCATTAGATTGTGCTTGAGAT
CTCAATGGATGTCTTTCATTCACTGCTTTCCAGTTGtgactttcgttttt
aaaacttcttttttttgtagGACTTCTAATAGGATGTTTTTGAGAAGTTG
ACGATCTTCTGGTTGTTTCAGCTCCATGAATATTGGACGAATAGTGTTTT
TTTGACACTGCTGCTCCTTGTTGAGTCATCGATGATGAAGCAGCGTTGCT
GGAGAATCTTCTAGTGCTATCCACCGTTGATGtgatagtttgtctaacag
ggCTGTTTTGCTTTCTTGAAATACTAACCCTTCTTTTTGATATGGTACCT
TGTCTGGTCTCTACATTATCCGATTTGGAAGATGGATCAAAA Run BLAST on NCBI protein sequence of TCONS_00016816-protein >TCONS_00016816-protein ID=TCONS_00016816-protein|Name=TCONS_00016816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
FDPSSKSDNVETRQGTISKRRVSISRKQNSPVRQTITSTVDSTRRFSSNA
ASSSMTQQGAAVSKKHYSSNIHGAETTRRSSTSQKHPIRSPTKKRSFKNE
SHNWKAVNERHPLRSQAQSNDFYNEKDHGTKRKGEEEPMTRTSNLKKRRI
QSRSLYEGKIVKFVSYQGHPYGFVTSEGISHEERQIYCIGTTDIHFSFRC
VLSSLLELQTGDIISFKLQEPRTKRKDRVRAVNVTVLQLSKRSYRVLKDY
LTRVEDALDSKEEGSDIRETFGYGDLFIDSDDARLGDSDVDEHANGN Run BLAST on NCBI transcript from alignment at sc0000252:54037..54928 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016816 ID=TCONS_00016816|Name=TCONS_00016816|organism=Clytia hemisphaerica|type=transcript|length=892bp|location=Sequence derived from alignment at sc0000252:54037..54928 (Clytia hemisphaerica)
TTTTGATCCATCTTCCAAATCGGATAATGTAGAGACCAGACAAGGTACCA
TATCAAAAAGAAGGGTTAGTATTTCAAGAAAGCAAAACAGccctgttaga
caaactatcaCATCAACGGTGGATAGCACTAGAAGATTCTCCAGCAACGC
TGCTTCATCATCGATGACTCAACAAGGAGCAGCAGTGTCAAAAAAACACT
ATTCGTCCAATATTCATGGAGCTGAAACAACCAGAAGATCGTCAACTTCT
CAAAAACATCCTATTAGAAGTCctacaaaaaaaagaagttttaaaaacga
aagtcaCAACTGGAAAGCAGTGAATGAAAGACATCCATTGAGATCTCAAG
CACAATCTAATGACTTTTACAATGAAAAAGATCACGGAACAAAACGGAAA
GGAGAGGAAGAACCTATGACGAGGACATCTAATTTGAAGAAACGCCGGAT
ACAGTCACGATCTCTTTACGAAGGGAAGATAGTGAAGTTCGTCTCTTATC
AGGGACATCCTTATGGGTTTGTTACCAGTGAAGGAATCTCACATGAAGAA
CGGCAAATTTATTGTATCGGGACGACGGATATTCACTTTAGCTTTCGTTG
TGTCCTATCAAGTTTACTGGAGTTGCAAACAGGAGATATCATATCGTTCA
AACTTCAAGAACCTCGAACCAAGAGAAAAGATAGAGTGCGAGCCGTCAAT
GTTACCGTTCTACAGTTATCGAAAAGAAGTTACCGAGTGCTTAAAGATTA
TCTTACGCGTGTAGAAGACGCGCTTGACTCCAAAGAAGAAGGAAGTGATA
TCCGAGAGACATTCGGCTATGGAGATCTGTTTATTGATAGCGATGACGCA
AGATTGGGAGATTCTGATGTTGATGAACATGCTAATGGCAAT Coding sequence (CDS) from alignment at sc0000252:54037..54928 >TCONS_00016816 ID=TCONS_00016816|Name=TCONS_00016816|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at sc0000252:54037..54928 (Clytia hemisphaerica)
TTTGATCCATCTTCCAAATCGGATAATGTAGAGACCAGACAAGGTACCAT
ATCAAAAAGAAGGGTTAGTATTTCAAGAAAGCAAAACAGccctgttagac
aaactatcaCATCAACGGTGGATAGCACTAGAAGATTCTCCAGCAACGCT
GCTTCATCATCGATGACTCAACAAGGAGCAGCAGTGTCAAAAAAACACTA
TTCGTCCAATATTCATGGAGCTGAAACAACCAGAAGATCGTCAACTTCTC
AAAAACATCCTATTAGAAGTCctacaaaaaaaagaagttttaaaaacgaa
agtcaCAACTGGAAAGCAGTGAATGAAAGACATCCATTGAGATCTCAAGC
ACAATCTAATGACTTTTACAATGAAAAAGATCACGGAACAAAACGGAAAG
GAGAGGAAGAACCTATGACGAGGACATCTAATTTGAAGAAACGCCGGATA
CAGTCACGATCTCTTTACGAAGGGAAGATAGTGAAGTTCGTCTCTTATCA
GGGACATCCTTATGGGTTTGTTACCAGTGAAGGAATCTCACATGAAGAAC
GGCAAATTTATTGTATCGGGACGACGGATATTCACTTTAGCTTTCGTTGT
GTCCTATCAAGTTTACTGGAGTTGCAAACAGGAGATATCATATCGTTCAA
ACTTCAAGAACCTCGAACCAAGAGAAAAGATAGAGTGCGAGCCGTCAATG
TTACCGTTCTACAGTTATCGAAAAGAAGTTACCGAGTGCTTAAAGATTAT
CTTACGCGTGTAGAAGACGCGCTTGACTCCAAAGAAGAAGGAAGTGATAT
CCGAGAGACATTCGGCTATGGAGATCTGTTTATTGATAGCGATGACGCAA
GATTGGGAGATTCTGATGTTGATGAACATGCTAATGGCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016816-exon-sc0000252-1491911889:54037..54928 | TCONS_00016816-exon-sc0000252-1491911889:54037..54928 | Clytia hemisphaerica | exon |
| TCONS_00016816-exon-sc0000252-1510915933:54037..54928 | TCONS_00016816-exon-sc0000252-1510915933:54037..54928 | Clytia hemisphaerica | exon |
| TCONS_00016816-exon-sc0000252-1575043694:54037..54928 | TCONS_00016816-exon-sc0000252-1575043694:54037..54928 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000252 | supercontig | sc0000252:54037..54928 . |
Blast
The following BLAST results are available for this feature:
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