TCONS_00016856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016856
Unique NameTCONS_00016856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1017

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016856 ID=TCONS_00016856|Name=TCONS_00016856|organism=Clytia hemisphaerica|type=transcript|length=1017bp
CCGAAAACCAAGAACCAAGGCGAGAAATGGAAAGCATACATTATGTTACC
GATGATAACTAAGGTGTTGCAGATCAGGAAGATTTGACGTACTTTACGCG
TGCGGTCGACCCACCGTCCGATGAAGACTGATAAGATAACAGCTGCAATC
AGGTACGAGGAAGCTACTAAGCTGTAGAATAGCTTTGGCTGATCTGTGTT
GATCATTTCCTTGATGTACAGCCAGAGTGTGAGAAATGTCACCGAATATT
CCATACctacaaaaaagaagaattgattTGTTCAAAAACTGTTCGGGATG
GTTAATATTGACTGATGAACGTCATTGAAAAGGATTGCTATCAGAGTGTC
TACACACGTTCTTAACACCTTATAAGGATATCCGGAGGTACGGCAGACAG
ACTTGTCAAACTGGTTTGACTAAGATCAACGGACTTTTATTGTTAAGAAA
TATGTGATTCagcgttttcattttattaatttcaattaatttcaattaat
ttcaattaattaacattAACTGCTAAACGTAGGAGGTCCATTTGGGGCTA
ACGACACTTCCGCTAGGCCCCAGAACGACATAACATAACACACAAAATGA
TTTCCGTCCTGGTCCTAACGACCATAACTTACGAAATTGCCTATCCGACA
AATGGTATAAAATCACCCAAAAATATGACCTAGAGAGGAAAAGAGAAGAG
AAGAGAAGGAGACACATACGAAAACAACAAACACCAAGAGTCGCCGAGAA
GCACGAGTTTAACATCCTTGTTTTTACCGTCTTTGGAGAAGATTTAGTTA
ACGTCGAAAGTATCTTTGTTGGAATATTCTGAACTTTTTATATGGTGTTG
GATTATCATTTAAATAACATGTAGaggtttttcacaaaaaaacttaTTAA
TGATTGTTGGGAAATGGACATCAGTTCATCAGTTATCAGTATTTGGTTAA
ATTTGTGATTTTCTAAAACCATTTACTCTATACTAAAATATACTTAATTT
TGTATCTCAAAATAGAG
Run BLAST on NCBI

transcript from alignment at sc0000253:185811..187171+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016856 ID=TCONS_00016856|Name=TCONS_00016856|organism=Clytia hemisphaerica|type=transcript|length=1361bp|location=Sequence derived from alignment at sc0000253:185811..187171+ (Clytia hemisphaerica)
CCGAAAACCAAGAACCAAGGCGAGAAATGGAAAGCATACATTATGTTACC
GATGATAACTAAGGTGTTGCAGATCAGGAAGATTTGACGTACTTTACGCG
TGCGGTCGACCCACCGTCCGATGAAGACTGATAAGATAACAGCTGCAATC
AGGTACGAGGAAGCTACTAAGCTGTAGAATAGCTTTGGCTGATCTGTGTT
GATCATTTCCTTGATGTACAGCCAGAGTGTGAGAAATGTCACCGAATATT
CCATACctacaaaaaagaagaattgattTGTTCAAAAACTGTTCGGGATG
GTTAATATTGACTGATGAACGTCATTGAAAAGGATTGCTATCAGAGTAAG
GAAAAACAAAGTAACTGGATTCGAATCAGTATTTTATGATTCAAAACATA
CCTAGCATGATACACTCCAATGTGAAAGCTTTGGTTGTCCAATAACGTTT
GCGTTCCCATTGCTTGATGTCTACAGGCTCGTCACTCCCTGCTTCTTTAT
CTAggtttttgtacattttgttggTAAGATTAAAGCTACGTATCTAGTAT
TCAGTATCCAGTatcgattttcaaattttaaatggaGAATTTCCAGCTAT
ATATGAGTTTTCATGTCATAAATGTTTCAAATGAAAGCACATGAAAGATT
GATATTGAATCTAACGAACAGACCTTGCACTTTTTATAGGTGTCTACACA
CGTTCTTAACACCTTATAAGGATATCCGGAGGTACGGCAGACAGACTTGT
CAAACTGGTTTGACTAAGATCAACGGACTTTTATTGTTAAGAAATATGTG
ATTCagcgttttcattttattaatttcaattaatttcaattaatttcaat
taattaacattAACTGCTAAACGTAGGAGGTCCATTTGGGGCTAACGACA
CTTCCGCTAGGCCCCAGAACGACATAACATAACACACAAAATGATTTCCG
TCCTGGTCCTAACGACCATAACTTACGAAATTGCCTATCCGACAAATGGT
ATAAAATCACCCAAAAATATGACCTAGAGAGGAAAAGAGAAGAGAAGAGA
AGGAGACACATACGAAAACAACAAACACCAAGAGTCGCCGAGAAGCACGA
GTTTAACATCCTTGTTTTTACCGTCTTTGGAGAAGATTTAGTTAACGTCG
AAAGTATCTTTGTTGGAATATTCTGAACTTTTTATATGGTGTTGGATTAT
CATTTAAATAACATGTAGaggtttttcacaaaaaaacttaTTAATGATTG
TTGGGAAATGGACATCAGTTCATCAGTTATCAGTATTTGGTTAAATTTGT
GATTTTCTAAAACCATTTACTCTATACTAAAATATACTTAATTTTGTATC
TCAAAATAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009437XLOC_009437Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016856-exon-sc0000253-1491911889:185811..186155TCONS_00016856-exon-sc0000253-1491911889:185811..186155Clytia hemisphaericaexon
TCONS_00016856-exon-sc0000253-1510915933:185811..186155TCONS_00016856-exon-sc0000253-1510915933:185811..186155Clytia hemisphaericaexon
TCONS_00016856-exon-sc0000253-1575043694:185811..186155TCONS_00016856-exon-sc0000253-1575043694:185811..186155Clytia hemisphaericaexon
TCONS_00016856-exon-sc0000253-1491911889:186500..187171TCONS_00016856-exon-sc0000253-1491911889:186500..187171Clytia hemisphaericaexon
TCONS_00016856-exon-sc0000253-1510915933:186500..187171TCONS_00016856-exon-sc0000253-1510915933:186500..187171Clytia hemisphaericaexon
TCONS_00016856-exon-sc0000253-1575043694:186500..187171TCONS_00016856-exon-sc0000253-1575043694:186500..187171Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:185811..187171 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0439081	0.0856346	0.149145	0.0972767	1.34166	0.55288	0.343161	0.567587	0	0	0	0	0	0.00431441	0.0997299	0.0267564	0.0988849	0.00636302	0.0933506	0.0976846	0	0	0	0.0457701	0	0	0	0	0.146204	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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