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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016893 ID=TCONS_00016893|Name=TCONS_00016893|organism=Clytia hemisphaerica|type=transcript|length=4203bpRun BLAST on NCBI protein sequence of TCONS_00016893-protein >TCONS_00016893-protein ID=TCONS_00016893-protein|Name=TCONS_00016893-protein|organism=Clytia hemisphaerica|type=polypeptide|length=962bp MTDSKYFTTTKKGEIYELKAELNQPKMDRKKEAVKKVIAIMTVGKDVSALRun BLAST on NCBI transcript from alignment at sc0000253:271095..292251- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016893 ID=TCONS_00016893|Name=TCONS_00016893|organism=Clytia hemisphaerica|type=transcript|length=21157bp|location=Sequence derived from alignment at sc0000253:271095..292251- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000253:271095..292251- >TCONS_00016893 ID=TCONS_00016893|Name=TCONS_00016893|organism=Clytia hemisphaerica|type=CDS|length=57780bp|location=Sequence derived from alignment at sc0000253:271095..292251- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016893 vs. Swiss-Prot (Human)
Match: AP2B1 (AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1) HSP 1 Score: 1296.57 bits (3354), Expect = 0.000e+0 Identity = 662/975 (67.90%), Postives = 770/975 (78.97%), Query Frame = 2
Query: 1046 MTDSKYFTTTKKGEIYELKAELNQPKMDRKKEAVKKVIAIMTVGKDVSALFPDVINCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFARDCDDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINSTLVEDQGFLELLRDLLSDSNPMVVANAVASLSEIADASPSAVQYFEINSATINKLLTALNECTEWGQIFILDSLANYSPRDEKEAQSICERVTPRLSHANAAVVLSAXXXXXXXXXXXXQGSQFIQSLVKKLSPPLVTLLSSEPEVQYVALRNINLIVQKRPDILRNEIKAFFVKYNDPIYVKLEKLDIMIRLVSQQNIGQVLAELKEYATEVDVDFVRKSVRAIGRCAIKVEQSAEKCVTTLLDLIQNKVNYVVQEAIVVLKDIFRRYPNKYESIISTLCENLDSLDEPEAKASMIWIIGEYAERIDNADELLTTFLDGFSDENTQVQLQLLTAIVKLFLKRPTDTQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPAAAKEVVLAEKPLISEETDLIEPSLLDELICHISSLASVYHRPPSSFVAGKSSQKRATLPARSGAPDATPSVDTTPAADQVQQPTLSQVAGVQPAAPQPTTDSLLGDLLELGPSSXXXXXXXXXXXXXXXXXXXXDVXXXXXXXXXXVDLLGGDLSML--------STPAP-APSIGGGLIDTGSSAGGGGLNDLFSIQ---GALPGAGYVGPQTVLLPASKGKGLEISGTFARRQGAVFMDLTFTNRAMQAMGGFAIQFNKNSFGIAPSA-LQVQSPIAPNTSAQTSLQITPAAGPIQKMDPINNLQVAIKNNIDIFYFSCAIPAHVLFIESGKMDRKVFLDTWKDIPAANEVQNNVNTRGFNSDGIQNVLEANNIFTIAKRTVEGQDMLYQSLRFTNGITVLSELKLVPGNASIQLSLKTTAMDVIGIVQDIYQKILQ 3931
MTDSKYFTT KKGEI+ELKAELN K +++KEAVKKVIA MTVGKDVS+LFPDV+NCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVN+F +DC+DPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN+ +VEDQGFL+ LRDL++DSNPMVVANAVA+LSEI+++ P++ ++N INKLLTALNECTEWGQIFILD L+NY+P+D++EAQSICERVTPRLSHAN+AVVLSAVKVLMK +E++ + S + L+KKL+PPLVTLLS EPEVQYVALRNINLIVQKRP+IL+ EIK FFVKYNDPIYVKLEKLDIMIRL SQ NI QVLAELKEYATEVDVDFVRK+VRAIGRCAIKVEQSAE+CV+TLLDLIQ KVNYVVQEAIVV++DIFR+YPNKYESII+TLCENLDSLDEP+A+A+MIWI+GEYAERIDNADELL +FL+GF DE+TQVQL LLTAIVKLFLK+P++TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP AKEVVL+EKPLISEETDLIEP+LLDELICHI SLASVYH+PP++FV G R LP G+ DA S T A ++QP + P L+LGP +VP Q AVDLLGG L L S PA APS ++ + GLNDLF + G PG GYV P+ V LPA K KGLEISGTF RQG ++M++ FTN+A+Q M FAIQFNKNSFG+ PS L + +P+ PN S SL + GP+ KM+P+NNLQVA+KNNID+FYFSC IP +VLF+E GKM+R+VFL TWKDIP NE+Q + N+D + + L+ NN++TIAKR VEGQDMLYQSL+ TNGI +L+EL++ PGN + LSLK A +V + +Y IL+
Sbjct: 1 MTDSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNS-NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSHGIHRKHLPIHHGSTDAGDSPVGTTTATNLEQPQV---------IPSQGDLLGDLLNLDLGPP--------------------VNVPQVSSMQMGAVDLLGGGLDSLVGQSFIPSSVPATFAPSPTPAVVSS-------GLNDLFELSTGIGMAPG-GYVAPKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPNQSIDVSLPLN-TLGPVMKMEPLNNLQVAVKNNIDVFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENELQFQIKECHLNADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQVYDSILK 936 The following BLAST results are available for this feature:
BLAST of TCONS_00016893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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