TCONS_00016919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016919
Unique NameTCONS_00016919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length897

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016919 ID=TCONS_00016919|Name=TCONS_00016919|organism=Clytia hemisphaerica|type=transcript|length=897bp
TCAATTTTGTAAAGTTTGACGACTATTGAAGGattatttcaaaagatatt
cAACTTTGCTTTTCAGTGTTATGGATGATGTTCCACAAGATGGAAGCGAA
AACTGTGGAAAGGGTCAAATTGATGTCTGTTATACGCCAGCTCGAGATGG
AATGAAATTCGAATATTATTGCACTGAAAGTTGTGACTCGGATGATGTTG
GATTTTATTATCGAATTGTCAAAAGTCCAGTTGGAGCTGACGATTTATGG
TGTACAAATCTCCCACAGTATGATTGGCCCTCAAACTTACAACCGACGCC
CCGAACTTTACCACCTAGAGGTACCACCCCGCCCAACTTAGATCAAGACT
CCAGCAGTATCACCAACCAGGCTAAATACAGTGTCGTTTTAGCCTTGGCG
TCTgtgatttgtttgtttttgtggaaGTAATTTATTGAATGTTTAATGAT
TGTAATAAGCTTGGGAACGGTTTAGAATATGCATTTATAATTAGTAGata
caacacccctgtctcataggCCCGATAGGATCCTTTCACTtggaatacac
ctttcccgcaATTCCCAAAACAGATGCGCGCACATTATTTTtttgctctc
caccgtttggtctctggaggtaaacaaacccgtttttgcctgcctTTCCT
TAGGGGAAGTtagttttttgagcttttcttaagttcaaTCTTTAGAAAAT
GTTGTCTATATTAATTGCAAAATCTATTATCCCCTGTAGTAGCCTCTAAA
CGCGCTTTTCCTAAGTTTACGGGTGTTATACTTTCAAAATctttagaaat
ttttgaaattctgaaacacttttgattttaaatgtaaattgacaaattat
ttttatgaaattaatataaaCATTATTTCTGGTTTAAATTACCAAAA
Run BLAST on NCBI

protein sequence of TCONS_00016919-protein

>TCONS_00016919-protein ID=TCONS_00016919-protein|Name=TCONS_00016919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MDDVPQDGSENCGKGQIDVCYTPARDGMKFEYYCTESCDSDDVGFYYRIV
KSPVGADDLWCTNLPQYDWPSNLQPTPRTLPPRGTTPPNLDQDSSSITNQ
AKYSVVLALASVICLFLWK
Run BLAST on NCBI

transcript from alignment at sc0000254:283598..290023+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016919 ID=TCONS_00016919|Name=TCONS_00016919|organism=Clytia hemisphaerica|type=transcript|length=6426bp|location=Sequence derived from alignment at sc0000254:283598..290023+ (Clytia hemisphaerica)
TCAATTTTGTAAAGTTTGACGACTATTGAAGGattatttcaaaagatatt
cAACTTTGCTTTTCAGTGTTATGGATGATGTTCCACAAGATGGAAGCGAA
AACTGTGGAAAGGTGAGTAGGATGTGATGACGTATTTCAGTCATATTCGT
GTCcctatattttattgtttttttgcctTCACCTTACTAACACAGCGTTA
GTATGAATATGGTTAACCATACAAAcagagcgatggccaagtggtcaaag
acGTCAGTGTCTCAAACCAGGGGTTCGTGGTTCGAATCCCCACTTCCTCC
AATGTTtggttcagttcatagatagccgagccagCTGGCCGTGAACCGCg
taaaaacaatcgaaagactgtcaaaagtcctagattactgggctatctaC
GTAAAATATCCACTCTATCTATCTACGTCACGAACAtaacttgcctcgtt
ttgaaataatggccatggtgattaactcccagcaaacttcattaaaacta
ctttctattcataaacaagaagccgaagcggcgtgaaggcccagctgacg
tggcaataaccaaatGTCGTTTGTAACGGGTACCTTGAGAGAATCAATGT
TTGCGGAAtcgtatttttgcaattttagggtTTAAAGGAAACATCGAATC
TTAGAATCCTAATGCACATTTTCGGCAGAGATTGAAATACGAAACAttga
acattcaaaaagttaaaaaagtgaaaaatgaaaagaaagaaaccagctgc
gctggaaggtcagggGAAGGTCAGCAATAATAAATGATACGcaatatatg
tatataatagatttgcttaatgtttttgttactagtatgaaagaaaaaat
cggtttaaataaattcacaaacttcaaatgtcaaatgttgaccgtcaaag
ttcagaaatatcgatttaacccgtagcatcatgaaaaacattccaaactt
attcaaatttacacgtgagctgtattttagtatcctttaatgaattacaa
cataagtttacttgaaaaaattctctgtcaggtttgaaaaatccaaccac
cgaCCATTTAGAGCGATAGATCCAAAATTGTCTGTTTTCACGGgctgcat
catgaaaaacattccaaacttattcaaatttacacatgagctgtacttta
gtatcctttaatgagttacagcataggtttacttgaaaaaattccctgtt
aggtttgaaaaatccaaccaccgaccgttttagtttatttagagtaataa
atccaaaattgaccattttcacgggtagcatcatgaaaaacattccaaat
ttattcaaatttacactttagctgcattttagtatcctttaatgagttac
agcataaatttacttgaaaaattctctgtcaggtttaaaaaatccAGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNgcattttattatcatttaatgaattaca
acataagtttacttgaaaaaagtctcTGTCAAGCTTGAAATATAAAACTC
CAACATCCAAATGCTCCCTGACCTAAAAAATACTTTGCCATAAAGagaat
gaaatttgactttactaccaattcaatccaatatAACAGTAGGTCAAACA
TCGTGCGGGTAGGCGAggcaaaaattctaaatcggccgctggtttagcct
ggactactGGACTTGTTAATCTATTGCGCGCACANNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgggtggaaaatg
tttgaaaggaggctaatacagcagaattaagacaaaaaagggaactttca
aaaacattttcccaaaaattaataagtggaggggttggaataaaaatgtc
ctaggtggaaaatttccgaaaaattaattagcggggggggacggctatta
ggtacccgagagtaatcaccatggtaattgtttgaatacgaggcaagtga
tgttcgtgacgtaatttataaaaagaCCTATTGGGGTAATACAAAAAACA
TACCCATCATTCTGGAGCATGTAGAACCCCTTTTTACATCAGAAGGAAAC
AATTTCAAATGGTTTTCAAATTTCAGGGTCAAATTGATGTCTGTTATACG
CCAGCTCGAGATGGAATGAAATTCGAATATTATTGCACTGAAAGTTGTGA
CTCGGATGATGTTGGATTTTATTATCGAATTGTCAAAAGTCCAGTTGGAG
GTGAGATCGATTCAATGTTTTTATGAGAAAATTTCCGAAGGGGCTTAAAG
AGAAAACTCTTGGGTTGGAAATGAAGGCACTTATTTCCAATTCAAAACGC
GAGATCCACGAGGTTTTCACGAAAACATTGGATTGAAAATTAAATCTATC
Actaggttttgaaaaatttaacggtttcaatctggcgttagaaaatgttg
aaaggttgaagattcctaaAAAACCCAATGATTGATACACtgtttttttg
agaaaagtaTTTGGAAAGATTTTGTTGGTCATCAATGATTTGTTTCCATA
AACTTCGCTTTTAACATGTGAAAGCTGGGTCTAAACATTCGAAActtttt
taaggttttcaatGTTAAGATTCGGCTAGCAGCAtctgatagaccttttc
atagaTTACGTACACGTTTtccttataagaacatccaaaatttttgaagc
ctttggatgttcttaactttttgagttttaagcctgaaaatgttcttaac
atgttcttattttcaacattttgtgaataattctgACCATTTTTCTAATA
agtagggtgtttttgagtccacaaagccttaaaatattcttatatatttt
gctcttataaaaaacgtgtcaCGAGAAACGCTTACCTCGTTGTCAATGTA
TTGCCATGGTAGttgattcccagaggagttcaaaagaagtttactctatt
taaaaaaagtaacacTTGACGCATCAAGGGATTTGATCATCTAGATAATG
GTTTTAAAACAAAGTAGTCGTTGCACtctaaataattttgaaaaggccta
ttgatgtctctgaaaaacaaaaaacaataggGTCTCATATGCATCGAGTT
TAAAGCGCAGACATctgtaaagcctgaagggctagataagcaactttaag
ctttcttcagcaaaaaaaagtgaatatcggaaaaatattgttgctattgt
tttccaaaacccgcgaagcttctgattggtcaatcgctgaaattctattg
taNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNgacattaaaaatcaatttgtattggaaaagtgtcaatt
tttgtgacaccttactgtcagaaatgtcatcatgctcaaggtgtgaaaat
ttttaggtgtcaaatgttttattattttgaagctaaataaagtttaggaa
tttacagaaaatttcacggcaaaagctctattatttcaggagctattacc
acaatgctggacaaaaggttggtagacttctgcaatatttgcaaaatact
tcaatatcgatcaaaaacaagttcccaagaggctctgggtgNATAGTTta
acctccgaacagaaagaggcccccctagtacgaatagggttaaagcccGA
AGGTttagtagaatctctaacctttcccaggcaagaaaaggtgaagccac
ttatttcccattcgGAATGCGCCTAGAACGTGCCGCAATcactttgtttt
tgaggactgcatttttttttgaaatctagcgatagaccCGGTGTTTGTAT
AAAAACCATGCGCGGGCGCGTTCGCGTatcttcatttcccatccaggagt
ctcaagtctagtccttcgggcttggaagtcaatgctCATAGGGTGTATTA
TATCTTACTTTGCAGCTGACGATTTATGGTGTACAAATCTCCCACAGTAT
GATTGGCCCTCAAACTTACAACCGACGCCCCGAACTTTACCACCTAGAGG
TACCACCCCGCCCAACTTAGATCAAGACTCCAGCAGTATCACCAACCAGG
CTAAATACAGTGTCGTTTTAGCCTTGGCGTCTgtgatttgtttgtttttg
tggaaGTAATTTATTGAATGTTTAATGATTGTAATAAGCTTGGGAACGGT
TTAGAATATGCATTTATAATTAGTAGatacaacacccctgtctcataggC
CCGATAGGATCCTTTCACTtggaatacacctttcccgcaATTCCCAAAAC
AGATGCGCGCACATTATTTTtttgctctccaccgtttggtctctggaggt
aaacaaacccgtttttgcctgcctTTCCTTAGGGGAAGTtagttttttga
gcttttcttaagttcaaTCTTTAGAAAATGTTGTCTATATTAATTGCAAA
ATCTATTATCCCCTGTAGTAGCCTCTAAACGCGCTTTTCCTAAGTTTACG
GGTGTTATACTTTCAAAATctttagaaatttttgaaattctgaaacactt
ttgattttaaatgtaaattgacaaattatttttatgaaattaatataaaC
ATTATTTCTGGTTTAAATTACCAAAA

Coding sequence (CDS) from alignment at sc0000254:283598..290023+

>TCONS_00016919 ID=TCONS_00016919|Name=TCONS_00016919|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0000254:283598..290023+ (Clytia hemisphaerica)
ATGGATGATGTTCCACAAGATGGAAGCGAAAACTGTGGAAAGGGTCAAAT
TGATGTCTGTTATACGCCAGCTCGAGATGGAATGAAATTCGAATATTATT
GCACTGAAAGTTGTGACTCGGATGATGTTGGATTTTATTATCGAATTGTC
AAAAGTCCAGTTGGAGCTGACGATTTATGGTGTACAAATCTCCCACAGTA
TGATTGGCCCTCAAACTTACAACCGACGCCCCGAACTTTACCACCTAGAG
GTACCACCCCGCCCAACTTAGATCAAGACTCCAGCAGTATCACCAACCAG
GCTAAATACAGTGTCGTTTTAGCCTTGGCGTCTgtgatttgtttgttttt
gtggaaGTAAATGGATGATGTTCCACAAGATGGAAGCGAAAACTGTGGAA
AGGGTCAAATTGATGTCTGTTATACGCCAGCTCGAGATGGAATGAAATTC
GAATATTATTGCACTGAAAGTTGTGACTCGGATGATGTTGGATTTTATTA
TCGAATTGTCAAAAGTCCAGTTGGAGCTGACGATTTATGGTGTACAAATC
TCCCACAGTATGATTGGCCCTCAAACTTACAACCGACGCCCCGAACTTTA
CCACCTAGAGGTACCACCCCGCCCAACTTAGATCAAGACTCCAGCAGTAT
CACCAACCAGGCTAAATACAGTGTCGTTTTAGCCTTGGCGTCTgtgattt
gtttgtttttgtggaaGTAAATGGATGATGTTCCACAAGATGGAAGCGAA
AACTGTGGAAAGGGTCAAATTGATGTCTGTTATACGCCAGCTCGAGATGG
AATGAAATTCGAATATTATTGCACTGAAAGTTGTGACTCGGATGATGTTG
GATTTTATTATCGAATTGTCAAAAGTCCAGTTGGAGCTGACGATTTATGG
TGTACAAATCTCCCACAGTATGATTGGCCCTCAAACTTACAACCGACGCC
CCGAACTTTACCACCTAGAGGTACCACCCCGCCCAACTTAGATCAAGACT
CCAGCAGTATCACCAACCAGGCTAAATACAGTGTCGTTTTAGCCTTGGCG
TCTgtgatttgtttgtttttgtggaaGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009475XLOC_009475Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016919-proteinTCONS_00016919-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016919-exon-sc0000254-1491911889:283598..283709TCONS_00016919-exon-sc0000254-1491911889:283598..283709Clytia hemisphaericaexon
TCONS_00016919-exon-sc0000254-1510915933:283598..283709TCONS_00016919-exon-sc0000254-1510915933:283598..283709Clytia hemisphaericaexon
TCONS_00016919-exon-sc0000254-1575043694:283598..283709TCONS_00016919-exon-sc0000254-1575043694:283598..283709Clytia hemisphaericaexon
TCONS_00016919-exon-sc0000254-1491911889:286724..286847TCONS_00016919-exon-sc0000254-1491911889:286724..286847Clytia hemisphaericaexon
TCONS_00016919-exon-sc0000254-1510915933:286724..286847TCONS_00016919-exon-sc0000254-1510915933:286724..286847Clytia hemisphaericaexon
TCONS_00016919-exon-sc0000254-1575043694:286724..286847TCONS_00016919-exon-sc0000254-1575043694:286724..286847Clytia hemisphaericaexon
TCONS_00016919-exon-sc0000254-1491911889:289363..290023TCONS_00016919-exon-sc0000254-1491911889:289363..290023Clytia hemisphaericaexon
TCONS_00016919-exon-sc0000254-1510915933:289363..290023TCONS_00016919-exon-sc0000254-1510915933:289363..290023Clytia hemisphaericaexon
TCONS_00016919-exon-sc0000254-1575043694:289363..290023TCONS_00016919-exon-sc0000254-1575043694:289363..290023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000254supercontigsc0000254:283598..290023 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.229286	0.18453	0.256988	0.27809	0.180414	0.123929	1.39386	2.1036	1.78133	2.0833	3.90152	1.65364	22.8265	21.7904	14.217	15.2928	6.70824	5.88707	54.2114	43.3482	13.6487	13.7399	13.078	12.504	14.3406	16.4315	5.55388	5.83681	80.1742	62.2463
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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