TCONS_00017036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017036
Unique NameTCONS_00017036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017036 ID=TCONS_00017036|Name=TCONS_00017036|organism=Clytia hemisphaerica|type=transcript|length=4280bp
GTTTGTTTTGGCCATGTGATTCTTCagtaaaaacaatgaaaaaaattatg
tttttttttattcagctCGAAGTCGCTCTAATGGCTCAAGGCTAGAAACT
GGACTTGTACCAAGAAGACGAAGTAGACGCTTGAAGAAGAGAAATGTAAC
ATTCAAGAAGCAAGTGATGATGTCAGCAGATATACCATACAAATGCTCTG
CTGCTCGAAGTCTTTTTGTTGTCAGATCATTGTCAGATTTACCAAATGAA
CTTTCCATTAAAATACTTGAGTATTTCAATGCAAAGGAATTGATTTCATT
GAGATTGGTAAACAACCATTTTAAAAACCTTATTGATGGTACCCCAAGTA
TTTGGTCAAGAGTTAGCTACCAAAACATGTGGCCATCAACGCAAAAAGAC
TACTCCCTTTTCAGAAGGGGTTCAAATCATGGAAATGTTGAAAGTCTAAC
AAAACTTGGCTTGTCTCATCTCTACCATTATAACTTAACAGTTGGggaag
aaaaaaacaagaaagacgTTCAAGAACACTCAATCAAAGCTGCAAACTAC
TTGCACAATCTGGATCTCAATATCCATCCCAATAAACCGTTAACTTGGAT
GTTAATTCGGCCACCATGGTCTATGTCTAAAAGTATCTGCCTGAAACACT
TGGTGCATACGCAAATGTTAACTCTCAAGGAATCCAAAATGAATGGACCA
TTGTGTTATAACATTGGACGTATCTTCAACTTGGAATCagacaacaacag
caacaaagaaaaatcaactgAAAACTTCCTACAATCTTGTGATCTTCGCT
GCTCACATGCAAAGTTTGAGCTTCTGTTGGCAAGGAAAAATGAGATTTCA
GCTGATGCTGGAAAGACCTTACAGTGGGTTCGAGAATTGAGAGAATGTGC
TATGACAGGGAATAAGGAAGCAATTTTTGAACTTGTTGGTTTTGCTTTAT
CAAACAATTCACTTTTTATTGAGGACATGTTGAATATGAACAAACTCTCG
AAAAACTTATTTTCCAATTGTCAATGTGTTCGTGTTGACAAACTTGAACT
TTACCAACCTAAAATAAATAGCTTAATGAGATGTATCTTAGTAGATTGGC
TAGCAGAAGTTGCTTATATGAAAGACATGTCACATGAGGTGTTACATGCA
GCTGTTAGCTATGTTGATCGTTACTTGATGTCTCGAGTGGTTGAAAGAAC
CAAATTGCAATTGTTAGGAATCTCATGTTTGTTGCTGGCGGCAAAaTCAC
ATTATGATGCAAGACAAGTACACATTTTGACGGTCAGAGAATCATCATGG
TTGACTGATCAAACCTACCAATATGAAGACGTTGTCAaGATGATGGGAGA
GATTATTGGAGCATTTGCCGGTGATCTATGGAAACCTACTTCTTGGAATT
ACCTGCATACCATTCTTGCTTTACCAATGATTGACGATACATGGAAATCT
TGTTGTCATTATGTTCATGATTTAACGCTGCAATTCACTTTGTTTGGAAG
CTACAAACCGTCTGTTGTTGCTTGTTCATCTTTATTCTTAGCTGGTCTCA
TCTTGGACAGAGATAACTCTTGGCCATCAGAACTGGAagaagttactgga
tttcacgTCAAAGATATTGCTAACTGTGCATCCCTTATCCACTATAAaag
cTTCACCTGCTCCTCAATGAAGGATGACCGTGGTCTGCCACTTGAAAGCA
TCAAAGCTCGATACAGGAGTCAACGAATGCATTGCATTGCTTCCCTTCCT
TTACAAGATGAGAACACGTTGAAAAGCCGCATATTATCCACTGACAGCAC
ATTATCATGTGCATCGCAAGAACCACTGCAATTTGTCGTGTTGTCTAATG
ACGTTGATGAAACGTTAAACACGAGCATCAAAAGTGTTGATTATGATGGA
GACAGTGAATGCGAAGTTGATTCtgaaagtgattttgatgagagTTTTTG
TGTTGGACGCAGTCGGTTATCATCTTACCATTCAGTAGAAGAATTCTCAG
ACGACGAAACCACCATGGATGCTAGCAGTTTCAATTTCCGTGATCCTGAT
AACAGTTTACCACCTAAAGAGAGCTTCACGCCAATCTTTAATAAATCGCA
TAACTCCTCTGCAACCAAAAGGAACTCTTTCTTTGATGGCGtggaaaatc
atgaaaataagGTCACCGGTTTTCACGGGCAATATTTGGAACCCTTGAAA
TATGCAGGTGCGCAAGGTTCACATGATAAAGACTCGCCCAACAAGCTCGA
TGCTGCTTGTGGTACGACAAAACCGTCCACAAGTCGCCACCAAAGCCCTA
AATACCAACCATATCAACCATGTTCTAGCCGCTATGATCATGTCGGAAGG
CGGACTCGTTCAAGTTGTACACGCAGGTGagagaatttcaattttttgct
taGTGTACTTTTtagtttccttttttttaaattcaactgTAGATATGTAA
ATAGACCTATTCACAATTGAGAAGTTATTTTTATCTCTAGGGAAATGACT
GACTATCTTATCCATCTTTTGAGCGTGAATATTTTCActaaattcttgaa
aatgttattCACAATCTCTGTAGTACAAGTAGAAAGCTGTTGCAATGGTA
TCTTAGAGAAGTGGGCTTGTCGCCGTGTTTGGGGCGCTATCTTCTTGGGT
GATTTTAAAGATTGCAGATTTTACCTTTATTAAAAATGCGTCTTAAAAGT
GGATTCATAATGCGAAAAGTGTATATTTTAGTCACCAAATATGTCATGTG
GGATGTTAGagtaaaaattatatatatccTTACtatttcttaacattttc
tagAAGCTTTTTCGGCTAtattctttattattattatagatatttaaaaa
ttgaaatttacaaaACATACAATATTTAGTTATGAAAGTACAAAAAAAAT
GCAACAACATTAAAAAGGCGGTCCTGTAATCGCCTTTTTAATCATTTGTA
AAAAGTTCTATGACAAttgtatcaaaattttaaacctttttttttggaGT
ATATACATTCctagtaattatcatttttgaaaattaggaccttcatattt
ttttaaactttttaattcATATTTAAGTGTTTGGGTAATGTCTTTCTCTA
TATCGAAATGGGATCGAAATTTCAGGAAACAAATTCAGTTTAGATAGGCT
GACTGGTCTATGTATTATGTGTCTTTTATTATATGTAAACACCATGCTAA
TTATTTCTTTGGAAATTCGATGTCTCTTTCGTTGGTCAAAAATTAAGCTg
tccgatttaaaaaaaaaatcttgtatGACTAGTTATTTGTCACTTTGTAT
ATTTTCTCATATAACTACTTAATTGAATAATGAAACAAAAGAACATTTTA
TTCAATAACATTTTcatgtaaaatatttcttatttatttgtttctttcta
tagatttcCTTACGTTATTTGTCTTCGTACTTAATTAGATAGCTTTGTTA
GAATTACGAGTTTATTTCCAAATAAAATGtataccttttcgaccgtagcc
gctaaTTGCCGCGCCGGCATTTTTTTTGtctgctttatcccactaaaacc
gtcccagtccttttttaacacctatagacaatagaaaaatgtgtcaaaaa
aggattgggtcgagtttagggggataattaaatgaTTAAGTGGCACGTGC
CTAACCACGCGgctacgatcgaaaaggtgtacAGATACCTATTTGCGGAA
GGTTTATAAAGACTTTTACACTCTAAactttgattgcgtgaattttGTAA
TGTCAGCTTTATCTAAGGTTGTACTTTATCTATGTTTGTATTAATAGTTT
CTGTTTCCTTAGCTTACCAGGTAAAGAGTGTCCGGGAAAAGAGGAACATA
ATTTTCAGTGTGTGTTTTATTTGgtctttttaattattttagtgtttttt
ttatCACTGATCCTTTACCTTCTTCCTTTCAGAGACACTTTATTTGTTTC
TATATTTCACTTattccattttgtttttgttttttttatctagGTATTGT
TCCCATTGTCTAGGTAGAGTGTATATACAGGACCTCTCGTTAATTTTATt
ggttatttttctttaattttttttttacgatTCGTAGTGATTCATATTAT
TATACTCTTTGCTTTTATCTCTCTAAGAATTTGTTATTATCAAAAATGTA
GCATACATAATATTCTTCATTATTAAGTACATGTTAATTTTATTTCCTCA
ATTTTTAACACCCTATACCGTTTTTAAGTTAATGATAATGTTtacaaaag
atatttttaaaagaaaactttgaaCGTTTT
Run BLAST on NCBI

transcript from alignment at sc0000257:175794..187598+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017036 ID=TCONS_00017036|Name=TCONS_00017036|organism=Clytia hemisphaerica|type=transcript|length=11805bp|location=Sequence derived from alignment at sc0000257:175794..187598+ (Clytia hemisphaerica)
GTTTGTTTTGGCCATGTGATTCTTCagtaaaaacaatgaaaaaaattatg
tttttttttattcagctCGAAGTCGCTCTAATGGCTCAAGGCTAGAAACT
GGACTTGTACCAAGAAGACGAAGTAGACGCTTGAAGAAGAGAAATGTAAC
ATTCAAGAAGCAAGTGATGATGTCAGCAGATATACCATACAAATGCTCTG
CTGCTCGAAGTCTTTTTGTTGTCAGATCATTGTCAGATTTACCAAATGAA
CTTTCCATTAAAATACTTGAGTATTTCAATGCAAAGGAATTGATTTCATT
GAGATTGGTAAGAATAACAGTATAATCACTTGTTTGTGTTAAAGTATGTG
GATACCTTCATTTTGAATTATTAtccaaaaaatttttaacatgtATCAAC
ATTTCTCCAACCTAGTACAAAATTTatgaattaatttaaaatctaaTTAT
TTGAAAAGATTGGTATCTCttctgtgaaaatttaaaagtagTTTTGGATT
TTTAATTCACTATGCCCTATGCTTCATACATAGGATAATGGAAAACCTAC
ATTTTTACAGGCCACAAACCattttaaatgctttaaaatgcCCATGACTT
ACTGTAAAACTGCAGCATGATAATTTCAAGCTCAAAATTCTCCAAATCCC
AACTACAAAATGGTATTGTCTCATCGTCACTTTTCAATCCATAGGTAAAC
AACCATTTTAAAAACCTTATTGATGGTACCCCAAGTATTTGGTCAAGAGT
TAGCTACCAAAACATGTGGCCATCAACGCAAAAAGACTACTCCCTTTTCA
GAAGGTAATACATTCATTTTTGATCTTCTTCTTGGAATAAAATTGCTGAG
CCTACCTGGAgcatattcttttttttcttctgtagTTTAAAACCCACCAC
AGAACATTTGAGCTTTATGGTTAATTGCACTTTCATTTTAGGGGTTCAAA
TCATGGAAATGTTGAAAGTCTAACAAAACTTGGCTTGTCTCATCTCTACC
ATTATAACTTAACAGGTTGGTTTAcaaatttgatgaaacaaagcacaatt
ttcatttgctcttctttttttagaaaacacAATCCTTCCCTTAGCAGCAA
AAAAAGAGGATATTAGAGCTTTCTCTGTTTGTTGCTACAAATCCACTTAc
cacttttttacttttaggtataaacttcttaagagcagaaacttttgcga
taTACATGAATTTTAACCCTTtttgcaaaagtaaatgtctttaaaatttc
ttgaagGGGTCATTCCTGAAAGTTTATGGGCATTATTCAAGGAGGCGCTT
ATTAACCTAGGTCACTTTAGTAAAATGAATGGGAACCTCATTTGTAACTT
CCCAAGcaatttaaagtacctgaaaatcagaCCGGTCTTGGTCTTATTAC
GAGCGGTCTAGTAGCGGCCAAGTCTTTGTTTAGATCGGCCTCCAGACTTT
CTAGAAACGTGATCTCTAACAGTCCTGGTCGCTTCTAGATGCTTGTGGCC
GCTTATTAGACTGGTCTAGGTTGCTTGTTAGACGGGTCCGGGCTGTTTGT
TAAATCGCTCCAAGCCGCTGGTTAGTGATTTTTAGTAACAATTAcatcaa
aaaattgtaaaaggATGTCAACCGATCGCCCGGTCTCAGACCAGACGCTT
TGCAGCAACAGCTAAATTAACTAGACTCGTAGCAGCCTTTTGGTTAGCAG
CCTTTTGGTAAACTTTTTACTTTCCATTTCTTGCTTTGATAAATAGTTGG
ggaagaaaaaaacaagaaagacgTTCNCATTTCTTGCTTTAATAAATAGT
TGGggaagaaaaaaacaagaaagacgTTCAAGAACACTCAATCAAAGCTG
CAAACTACTTGCACAATCTGGATCTCAATATCCATCCCAATAAACCGTTA
ACTTGGATGTTAATTCGGCCACCATGGTCTATGTCTAAAAGTATCTGCCT
GAAACACTTGGTGCATACGCAAATGTTAACTCTCAAGGTATGCTTTAGAA
TTTAATATTCCTTGCTTTTCTTTGATGATTTGCATCAGCCTAACTTTCCC
TTgtaatgtcttatttttttggatAAATTAATGTATTGACTGTACAACgg
tgctgcaaataaggaaaaGGAAATTTTTCAGTTGGCGGGTAATTTCCTTA
ATTTCAGATTGGCTAAAGACCTATTTTAATTTAAAGTTtgtcttttattt
gaaagcGGTATGAAGTATCTAGTTGGGCTGAATAGAAATGTAATTAGCat
gattaaaaataataaaagaactTTAATAAGCCTATAACTTATAATATTAA
CCTGACTGGTAATTACCagtcaccggccgttatttgcgGCACTTTAATGA
CTTGCGATTTAAAACTGAACTTTgagaaaaatagattttatttaatTCTT
CTTCCCTGTAGGAATCCAAAATGAATGGACCATTGTGTTATAACATTGGA
CGTATCTTCAACTTGGAATCagacaacaacagcaacaaagaaaaatcaac
tgAAAACTTCCTACAATCTTGTGATCTTCGCTGCTCACATGCAAAGTTTG
AGCTTCTGTTGGCAAGGAAAAATGAGATTTCAGCTGATGCTGGAAAGACC
TTACAGTGGGTTCGAGAATTGAGAGAATGTGCTATGACAGGGAATAAGGA
AGCAATTTTTGAACTTGTTGGTTTTGCTTTATCAAACAATTCACTTTTTA
TTGAGGACATGTTGAATATGAACAAACTCTCGAAAAACTTATTTTCCAAT
TGTCAATGTGTTCGTGTTGACAAACTTGAACTTTACCAACCTAAAATAAA
TAGCTTAATGAGATGTATCTTAGTAGATTGGCTAGCAGAAGTTGCTTATA
TGAAAGACATGTCACATGAGGTGTTACATGCAGCTGTTAGCTATGTTGAT
CGTTACTTGATGTCTCGAGTGGTTGAAAGAACCAAATTGCAATTGTTAGG
AATCTCATGTTTGTTGCTGGCGGCAAAGTAAGTTTGGCCTTGGGTCAATA
TATTCTTAAATTGCTTTCTAATGTTTCAATGAATGCATATCTTTGTGATA
AGTATCAAAAGTACATCATTTTGCTGTCAAGTGGAAATGATCCAGATATG
AATTTCCCTATACAATGTAGATAAGTGTTAAATAACATTGCTTGATATAA
ATTTGGATGGCAAAATGGATTTTGTATTATTTATCTTCAAAACCAAGTAT
TTCACACATCAGGGGATCCTTTCGACATGTGCAAAATTCATTTAAGCCTT
CGCAATGCAATAATGAATTCTTTTCAATTGAAATATATCCTTTTCATATC
ACATtttcaaatactttttaaaatgtttagaTCACATTATGATGCAAGAC
AAGTACACATTTTGACGGTCAGAGAATCATCATGGTTGACTGATCAAACC
TACCAATATGAAGACGTTGTCAagtatataaatattttttcatgagcTTG
TGTTAGACATACATTTTTAATCTTTATGTCAACTTGAGTCTAAAACGATT
GCTTTGTGCATAGGATTTGAATCTAGCTTAATTTCAGAAAGAATTTTCGA
TTTATGTTTTGTATGTATGATTTCATTCACCTNCATTTCTTGCTTTAATA
AATAGTTGGggaagaaaaaaacaagaaagacgTTCAAGAACACTCAATCA
AAGCTGCAAACTACTTGCACAATCTGGATCTCAATATCCATCCCAATAAA
CCGCTAACTTGGATGTTAATTCGGCCACCATGGTCTATGTCTAAAAGTAT
CTGCCTGAAACACTTGGTGCATACGCAAATGTTAACTCTCAAGGTATGCT
TTAGAATTTAATATTCCTTGCTTTTCTTTGATGATTTGCATCAGCCTAAC
TTTCCCTTgtaatgtcttatttttttggatAAATTAATGTATTGACTGTA
caacagtgctgcaaataaggaaaaGGAAATTTTTCAGTTGGCGGGTAATT
TCCTTAATTTCAGATTGGCTAAAGACCTATTTTAATTTAAAGTTtgtctt
ttatttgaaagcGGTATGAAGTATCTAGTTGGGCTGAATAGAAATGTAAT
TAGCatgattaaaaataataaaagaactTTAATAAGCCTATAACTTATAA
TATTAACCTGACTGGTAATTACCagtcaccggccgttatttgcgGCACTT
TAATGACTTGCGATTTAAAACTGAACTTTgagaaaaatagattttattta
atTCTTCTTCCCTGTAGGAATCCAAAATGAATGGACCATTGTGTTATAAC
ATTGGACGTATCTTCAACTTGGAATCagacaacaacagcaacaaagaaaa
atcaactgAAAACTTCCTACAATCTTGTGATCTTCGCTGCTCACATGCAA
AGTTTGAGCTTCTGTTGGCAAGGAAAAATGAGATTTCAGCTGATGCTGGA
AAGACCTTACAGTGGGTTCGAGAATTGAGAGAATGTGCTATGACAGGGAA
TAAGGAAGCAATTTTTGAACTTGTTGGTTTTGCTTTATCAAACAATTCAC
TTTTTATTGAGGACATGTTGAATATGAACAAACTCTCGAAAAACTTATTT
TCCAATTGTCAATGTGTTCGTGTTGACAAACTTGAACTTTACCAACCTAA
AATAAATAGCTTAATGAGATGTATCTTAGTAGATTGGCTAGCAGAAGTTG
CTTATATGAAAGACATGTCACATGAGGTGTTACATGCAGCTGTTAGCTAT
GTTGATCGTTACTTGATGTCTCGAGTGGTTGAAAGAACCAAATTGCAATT
GTTAGGAATCTCATGTTTGTTGCTGGCGGCAAAGTAAGTTTGGCCTTGGG
TCAATATATTCTTAAATTGCTTTCTAATGTTTCAATGAATGCATATCTTT
GTGATAAGTATCAAAAGTACATCATTTTGCTGTCAAGTGGAAATGATCCA
GATATGAATTTCCCTATACAATGTAGATAAGTGTTAAATAACATTGCTTG
ATATAAATTTGGATGGCAAAATGGATTTTGTATTATTTATCTTCAAAACC
AAGTATTTCACACATCAGGGGATCCTTTCGACATGTGCAAAATTCATTTA
AGCCTTCGCAATGCAATAATGAATTCTTTTCAATTGAAATATATCCTTTT
CATATCACATtttcaaatactttttaaaatgtttagaTCACATTATGATG
CAAGACAAGTACACATTTTGACGGTCAGAGAATCATCATGGTTGACTGAT
CAAACCTACCAATATGAAGACGTTGTCAagtatataaatattttttcatg
agcTTGTGTTAGACATACATTTTTAATCTTTATGTCAACTTGAGTCTAAA
ACGATTGCTTTGTGCATAGGATTTGAATCTAGCTTAATTTCAGAAAGAAT
TTTCGATTTATGTTTTGTATGTATGATTTCATTCACCTTAAAAGGTTGGA
TTTCGTGATGACAatgtaaatttctttttcttgataTTATTATCCATTTT
TCAGGATGATGGGAGAGATTATTGGAGCATTTGCCGGTGATCTATGGAAA
CCTACTTCTTGGAATTACCTGCATACCATTCTTGCTTTACCAATGGTACA
AATTGTTTGCATTTTGAAACCTTAGCCAACGACCACCATAACGACTATAA
GCTGATatcattaaaaataatcagTGAGCTTTATAAGCTCTGGACAAAGC
TGTCAACCATCTTTGATCAGATCGGGCTACACAGGCCTACTCTGCAGAGT
TGCCCGTTgttaggaaattaatttttgatctctttttgcttttttttttt
tgattttttcgctatCTTTTTCTGCAATGcgtaaaaaattaattgaagCT
GAAGGAACCGGTTAAGAAATACAGTATTGACTGTTTTTTTCAGGCTGTAC
TATTATATATTGCCCttggtcaacgcaacaaccttgcaagctcggtcgtt
acttgacctcgggcaatatttttcagtacagccctcacaaaccggtcatt
attgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
CGGCCGTTATTTGCGGCACTTTAATGACTTGCGATTTAAAACTGAACTTT
gagaaaaatagattttatttaatTCTTCTTCCCTGTAGGAATCCAAAATG
AATGGACCATTGTGTTATAACATTGGACGTATCTTCAACTTGGAATCaga
caacaacagcaacaaagaaaaatcaactgAAAACTTCCTACAATCTTGTG
ATCTTCGCTGCTCACATGCAAAGTTTGAGCTTCTGTTGGCAAGGAAAAAT
GAGATTTCAGCTGATGCTGGAAAGACCTTACAGTGGGTTCGAGAATTGAG
AGAATGTGCTATGACAGGGAATAAGgaaacaatttttgaacttgTTGGTT
TTGCTTTATCAAACAATTCACTTTTTATTGAGGACATGTTGAATATGAAC
AAACTCTCGAAAAACTTATTTTCCAATTGTCAATGTGTTCGTGTTGACAA
ACTTGAACTTTACCAACCTAAAATAAATAGCTTAATGAGATGTATCTTAG
TAGATTGGCTAGCAGAAGTTGCTTATATGAAAGACATGTCACATGAGGTG
TTACATGCAGCTGTTAGCTATGTTGATCGTTACTTGATGTCTCGAGTGGT
TGAAAGAACCAAATTGCAATTGTTAGGAATCTCATGTTTGTTGCTGGCGG
CAAAGTAAGTTTGGCCTTGGGTCAATATATTCTTAAATTGCTTTCTAATG
GTTTAATGAATGCATATCTTTGTGATAAGTATCAAAAGTACATCATTTTG
CAGTCAAGTGGAAATTACCAGATATGAAGTTCCCTATACCATGTAGATAA
GTGTTGAATAACATTGCTAGATATAAGTTTGGATGGCAAAATGGATTTCA
TATTATTTATCTTCAAAACCAAGTATTTCACACATCAGAGAATCCTTTCG
ACATGTGCAAAATTCGTTTAAGCCTTCGCAATGCAATAATAATGAATTCT
TTTCAATTGAAATACATCCTTTTCATATCACATtttcaaatactttttaa
aatgtttagaTCACATTATGATGCAAGACAAGTACACATTTTGACGGTCA
GAGAATCATCATGGTTGACTGATCAAACCTACCAATATGAAGACGTTGTC
AagtatataaatattttttcatgagcTTGTGTTAGACATACATTTTTAAT
CTTTATGTCAACTTGAGTCTAAAACGATTGCTTTGTGCATAGGATTTGAA
TCTAGCTTAATTTCAGAAAGAATTTTCGATTTATGTTTTGTATGTATGAT
TTCATTCACCTTAAAAGGTTGGATTTCGTGATGACAatgtaaatttcttt
ttcttgataTTATTATCCATTTTTCAGGATGATGGGAGAGATTATTGGAG
CATTTGCCGGTGATCTATGGAAACCTACTTCTTGGAATTACCTGCATACC
ATTCTTGCTTTACCAATGGTACAAATTGTTTGCATTTTGAAACCTTAGCC
AACGACCACCATAACGACTATAAGCTGATatcattaaaaataatcagTGA
GCTTTATAAGCTCTGGACAAAGCTGTCAACCATCTTTGATCAGATCGGGC
TACACAGGCCTACTCTGCAGAGTTGCCCGTTgttaggaaattaatttttg
atctctttttgcttttttttttttgattttttcgctatCTTTTTCTGCAA
TGcgtaaaaaattaattgaagCTGAAGGAACCGGTTAAGAAATACAGTAT
TGACTGTTTTTTTCAGGCTGTACTATTATATATTGCCCttggtcaacgca
acaaccttgcaagctcggtcgttacttgacctcgggcaatatttttcagt
acagccctcacaaaccggtcattattgcattagagtagtgctaccattta
ggtaccactttcaaaaaactctgatcaaaggTTTGGTTGGCCAAGACAGA
GAGACTGCCTCAAGAGCCTTTGTAAAGCTCAGTTAAGATAATATGTATTA
TgtgcaaataaaaaataataatccaGGCTTCACATTGATTCTTGTCAAAG
TCAACTTTTGTAACTCAAAGTGCAAGAACACAACCGGATTTGTGGGGGAT
GTACTATTGAATTttactttgatttcttttgttcaCGTTTTAGATTGACG
ATACATGGAAATCTTGTTGTCATTATGTTCATGATTTAACGCTGCAATTC
ACTTTGTTTGGAAGGTAATTTTAAATCTTGATTTTCTTAGGGAATCTGCT
ACGTTAATTTCAATATATAAATTAGGTTTTAAAGATTACATTTAATTTTC
ACGAGATTCAATTTTCTGATATATATTTTTGTGAATGAAGAAAAAATCAG
AGAAGTTGAAATGGTTCTGAAAgcgaaaacctgaaaattaatCCCATGAA
AATTAATCCCGCGAATGTTAATCTGATTACagtagaaaataaaaaaccaG
AGTAAATGTTCAGAAGTTGAAGCTAATGATCAAAAGCCAGGCATTTCGTA
TGTAAGAATCCTAATGGTAATAAAGGCActctcaaaaatgtttttcttct
tccAGCTACAAACCGTCTGTTGTTGCTTGTTCATCTTTATTCTTAGCTGG
TCTCATCTTGGACAGAGGTATGgtttttctattcattttctcaattttcg
tGCATTAAAGCGTGTGTTTATAAAAAACCACCACATAAAAACAGTTGTTA
CATGATGTCTGTCTGATCTGTTACCATTCTTTTTTCTCTGATTTGCTtta
gtttgttttgatctgatttcagttgttttgttttcagaaaaatcgaTTGA
AAGAAGCCGACAGCATTTTTTTTACCCAGTCTGAAAGTAATGATTTTTAT
CCAAGTTAGATAAAGAACTAAAAGAAAAGACCACAGCCAGTCCTGACTAT
AGTATACAAACCGATTATGTGTTATTATACATTTTTTCACTCTCTCACTC
TCTCTCACTCTCTCGTAGATAACTCTTGGCCATCAGAACTGGAagaagtt
actggatttcacgTCAAAGATATTGCTAACTGTGCATCCCTTATCCACTA
TAAaaggtgaaaaagaaaattcgttTCTCCTTGAATTTGGAGCAAAAGAA
ATTTGGGGCTATTgcacaaaatttgaaatgataaaatgatattttaacaa
atcatatttcaacattttttttcagcTTCACCTGCTCCTCAATGAAGGAT
GACCGTGGTCTGCCACTTGAAAGCATCAAAGCTCGATACAGGAGTCAACG
AATGCATTGCATTGCTTCCCTTCCTTTACAAGATGAGAACACGTTGAAAA
GCCGCATATTATCCACTGACAGCACATTATCATGTGCATCGCAAGAACCA
CTGCAATTTGTCGTGTTGTCTAATGACGTTGATGAAACGTTAAACACGAG
CATCAAAAGTGTTGATTATGATGGAGACAGTGAATGCGAAGTTGATTCtg
aaagtgattttgatgagagTTTTTGTGTTGGACGCAGTCGGTTATCATCT
TACCATTCAGTAGAAGAATTCTCAGACGACGAAACCACCATGGATGCTAG
CAGTTTCAATTTCCGTGATCCTGATAACAGTTTACCACCTAAAGAGAGCT
TCACGCCAATCTTTAATAAATCGCATAACTCCTCTGCAACCAAAAGGAAC
TCTTTCTTTGATGGCGtggaaaatcatgaaaataagGTCACCGGTTTTCA
CGGGCAATATTTGGAACCCTTGAAATATGCAGGTGCGCAAGGTTCACATG
ATAAAGACTCGCCCAACAAGCTCGATGCTGCTTGTGGTACGACAAAACCG
TCCACAAGTCGCCACCAAAGCCCTAAATACCAACCATATCAACCATGTTC
TAGCCGCTATGATCATGTCGGAAGGCGGACTCGTTCAAGTTGTACACGCA
GGTGagagaatttcaattttttgcttaGTGTACTTTTtagtttccttttt
tttaaattcaactgTAGATATGTAAATAGACCTATTCACAATTGAGAAGT
TATTTTTATCTCTAGGGAAATGACTGACTATCTTATCCATCTTTTGAGCG
TGAATATTTTCActaaattcttgaaaatgttattCACAATCTCTGTAGTA
CAAGTAGAAAGCTGTTGCAATGGTATCTTAGAGAAGTGGGCTTGTCGCCG
TGTTTGGGGCGCTATCTTCTTGGGTGATTTTAAAGATTGCAGATTTTACC
TTTATTAAAAATGCGTCTTAAAAGTGGATTCATAATGCGAAAAGTGTATA
TTTTAGTCACCAAATATGTCATGTGGGATGTTAGagtaaaaattatatat
atccTTACtatttcttaacattttctagAAGCTTTTTCGGCTAtattctt
tattattattatagatatttaaaaattgaaatttacaaaACATACAATAT
TTAGTTATGAAAGTACAAAAAAAATGCAACAACATTAAAAAGGCGGTCCT
GTAATCGCCTTTTTAATCATTTGTAAAAAGTTCTATGACAAttgtatcaa
aattttaaacctttttttttggaGTATATACATTCctagtaattatcatt
tttgaaaattaggaccttcatatttttttaaactttttaattcATATTTA
AGTGTTTGGGTAATGTCTTTCTCTATATCGAAATGGGATCGAAATTTCAG
GAAACAAATTCAGTTTAGATAGGCTGACTGGTCTATGTATTATGTGTCTT
TTATTATATGTAAACACCATGCTAATTATTTCTTTGGAAATTCGATGTCT
CTTTCGTTGGTCAAAAATTAAGCTgtccgatttaaaaaaaaaatcttgta
tGACTAGTTATTTGTCACTTTGTATATTTTCTCATATAACTACTTAATTG
AATAATGAAACAAAAGAACATTTTATTCAATAACATTTTcatgtaaaata
tttcttatttatttgtttctttctatagatttcCTTACGTTATTTGTCTT
CGTACTTAATTAGATAGCTTTGTTAGAATTACGAGTTTATTTCCAAATAA
AATGtataccttttcgaccgtagccgctaaTTGCCGCGCCGGCATTTTTT
TTGtctgctttatcccactaaaaccgtcccagtccttttttaacacctat
agacaatagaaaaatgtgtcaaaaaaggattgggtcgagtttagggggat
aattaaatgaTTAAGTGGCACGTGCCTAACCACGCGgctacgatcgaaaa
ggtgtacAGATACCTATTTGCGGAAGGTTTATAAAGACTTTTACACTCTA
AactttgattgcgtgaattttGTAATGTCAGCTTTATCTAAGGTTGTACT
TTATCTATGTTTGTATTAATAGTTTCTGTTTCCTTAGCTTACCAGGTAAA
GAGTGTCCGGGAAAAGAGGAACATAATTTTCAGTGTGTGTTTTATTTGgt
ctttttaattattttagtgttttttttatCACTGATCCTTTACCTTCTTC
CTTTCAGAGACACTTTATTTGTTTCTATATTTCACTTattccattttgtt
tttgttttttttatctagGTATTGTTCCCATTGTCTAGGTAGAGTGTATA
TACAGGACCTCTCGTTAATTTTATtggttatttttctttaattttttttt
tacgatTCGTAGTGATTCATATTATTATACTCTTTGCTTTTATCTCTCTA
AGAATTTGTTATTATCAAAAATGTAGCATACATAATATTCTTCATTATTA
AGTACATGTTAATTTTATTTCCTCAATTTTTAACACCCTATACCGTTTTT
AAGTTAATGATAATGTTtacaaaagatatttttaaaagaaaactttgaaC
GTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009528XLOC_009528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017036-exon-sc0000257-1491911889:175794..176100TCONS_00017036-exon-sc0000257-1491911889:175794..176100Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1510915933:175794..176100TCONS_00017036-exon-sc0000257-1510915933:175794..176100Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1575043694:175794..176100TCONS_00017036-exon-sc0000257-1575043694:175794..176100Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1491911889:176488..176597TCONS_00017036-exon-sc0000257-1491911889:176488..176597Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1510915933:176488..176597TCONS_00017036-exon-sc0000257-1510915933:176488..176597Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1575043694:176488..176597TCONS_00017036-exon-sc0000257-1575043694:176488..176597Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1491911889:176735..176808TCONS_00017036-exon-sc0000257-1491911889:176735..176808Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1510915933:176735..176808TCONS_00017036-exon-sc0000257-1510915933:176735..176808Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1575043694:176735..176808TCONS_00017036-exon-sc0000257-1575043694:176735..176808Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1491911889:177593..177780TCONS_00017036-exon-sc0000257-1491911889:177593..177780Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1510915933:177593..177780TCONS_00017036-exon-sc0000257-1510915933:177593..177780Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1575043694:177593..177780TCONS_00017036-exon-sc0000257-1575043694:177593..177780Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1491911889:180011..180576TCONS_00017036-exon-sc0000257-1491911889:180011..180576Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1510915933:180011..180576TCONS_00017036-exon-sc0000257-1510915933:180011..180576Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1575043694:180011..180576TCONS_00017036-exon-sc0000257-1575043694:180011..180576Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1491911889:180930..181022TCONS_00017036-exon-sc0000257-1491911889:180930..181022Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1510915933:180930..181022TCONS_00017036-exon-sc0000257-1510915933:180930..181022Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1575043694:180930..181022TCONS_00017036-exon-sc0000257-1575043694:180930..181022Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1491911889:181248..181338TCONS_00017036-exon-sc0000257-1491911889:181248..181338Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1510915933:181248..181338TCONS_00017036-exon-sc0000257-1510915933:181248..181338Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1575043694:181248..181338TCONS_00017036-exon-sc0000257-1575043694:181248..181338Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1491911889:183937..184007TCONS_00017036-exon-sc0000257-1491911889:183937..184007Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1510915933:183937..184007TCONS_00017036-exon-sc0000257-1510915933:183937..184007Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1575043694:183937..184007TCONS_00017036-exon-sc0000257-1575043694:183937..184007Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1491911889:184349..184410TCONS_00017036-exon-sc0000257-1491911889:184349..184410Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1510915933:184349..184410TCONS_00017036-exon-sc0000257-1510915933:184349..184410Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1575043694:184349..184410TCONS_00017036-exon-sc0000257-1575043694:184349..184410Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1491911889:184762..184849TCONS_00017036-exon-sc0000257-1491911889:184762..184849Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1510915933:184762..184849TCONS_00017036-exon-sc0000257-1510915933:184762..184849Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1575043694:184762..184849TCONS_00017036-exon-sc0000257-1575043694:184762..184849Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1491911889:184969..187598TCONS_00017036-exon-sc0000257-1491911889:184969..187598Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1510915933:184969..187598TCONS_00017036-exon-sc0000257-1510915933:184969..187598Clytia hemisphaericaexon
TCONS_00017036-exon-sc0000257-1575043694:184969..187598TCONS_00017036-exon-sc0000257-1575043694:184969..187598Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:175794..187598 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0299273	1.56313	0.0215077	2.10012	10.0257	7.70116	5.09302	4.58888	2.59575	2.5124	3.88589	2.039	3.47344	3.65872	1.14336	2.34886	4.77417	5.29597	4.25341e-06	0.339727	1.95204	3.55688	0.915852	0.0636137	0.0290516	2.55834	2.24757	2.95539e-06	1.77526	1.27007
Blast
[Close]
BLAST of TCONS_00017036 vs. Swiss-Prot (Human)
Match: CCNF (Cyclin-F OS=Homo sapiens GN=CCNF PE=1 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 4.513e-71
Identity = 161/499 (32.26%), Postives = 279/499 (55.91%), Query Frame = 2 
Query:  239 LPNELSIKILEYFNAKELISLRLVNNHFKNLIDGTPSIWSRVSYQNMWPSTQKDYSLFRRGSNHGNVESLTKLGLSHLYHYNLTVGEEKNKKDVQEHSIKAANYLHNLD-LNIHPNKPLTWMLIRPPWSMSKSICLKHLVHTQMLTLKESKMN--GPLCYNIGRIFNLESDNNSNKEKSTENFLQSCDLRCSHAKFELLLARKNEISADAGKTLQWVRELRECAMTGNKEAIFELVGFALSNNSLFIEDMLNMNKLSKNLFSNCQCVRVDKLELYQPKINSLMRCILVDWLAEVAYMKDMSHEVLHAAVSYVDRYLMSRVVERTKLQLLGISCLLLAAKSHYDARQVHILTVRESSWLTDQTYQYEDVVKMMGEIIGAFAGDLWKPTSWNYLHTILALPMIDDTWKSCCHYVHDLTLQFTLFGSYKPSVVACSSLFLAGLILDRDNSWPSELEEVTGFHVKDIANCASLIHYKSFTCSSMKDDRGLPLESIKARYRSQR 1726
            LP ++   IL++ + ++++++R V++  K+L+D   S+W+  S+Q +WPS   +  LF R +  GN E+  KLG+++LY+  L+V +E      + + +KA+ +    + LN+    P  W+ IRPPWS+S S C K +VH  +    + +      + + +GR+ +L  D    ++++ + F ++    C  + + L  + +    +D G+ L   R+LR+ A  G  EA   L     + N L +E +   +++   LF   Q V   ++   Q  +N  MR IL+DWL EVA MKD +   LH  V  VDRYL  R+V R +LQLLGI+C+++  +  + +++  ILT+RE+ WLTD TY+YED+V+MMGEI+ A  G +  PT  +Y   +L L  ++   +  C ++ +L+L  T   +Y P+ +A ++L LA L   +   W ++L ++TGF  +D+  C   +H K F   + KD R + L ++K R+  +R
Sbjct:   35 LPEDVLFHILKWLSVEDILAVRAVHSQLKDLVDNHASVWACASFQELWPSP-GNLKLFERAAEKGNFEAAVKLGIAYLYNEGLSVSDEAR---AEVNGLKASRFFSLAERLNVG-AAPFIWLFIRPPWSVSGSCC-KAVVHESLRAECQLQRTHKASILHCLGRVLSLFEDEE-KQQQAHDLFEEAAHQGCLTSSYLLWESDRRTDVSDPGRCLHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLE-VRASSEIVCQLFQASQAVSKQQVFSVQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVDRYLRRRLVPRYRLQLLGIACMVICTR--FISKE--ILTIREAVWLTDNTYKYEDLVRMMGEIVSALEGKIRVPTVVDYKEVLLTLVPVELRTQHLCSFLCELSLLHTSLSAYAPARLAAAALLLARLTHGQTQPWTTQLWDLTGFSYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRFEDKR 521
The following BLAST results are available for this feature:
BLAST of TCONS_00017036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCNF4.513e-7132.26Cyclin-F OS=Homo sapiens GN=CCNF PE=1 SV=2[more]
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